SUPERFAMILY Assignments for Genomes and Sequence Collections
We provide assignments for 3242 distinct organisms .
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We put considerable effort into classifying prokaryotes as either model species or strains. Please let us know if you disagree with our classification. The "longest transcript per gene" versions of the eukaryotic genomes may prove useful in eliminating bias from splice variants. A number of duplicate genomes are included. Originally these duplicate genomes used different sequence identifiers.
Email
superfamily@cs.bris.ac.uk to have a genome added and/or analysed.
Eukaryotes
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Prokaryotes
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Eukaryote strains/versions
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Prokaryote strains
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Eukaryotes - longest transcript per gene
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Other eukaryote and prokaryote organisms
Category
Organism
Animals
Vertebrates
Mammals
Homo sapiens 75_37 (Man) old version GRC
Homo sapiens (Man) NCBI version
Mus musculus 63_37 (longest transcript per gene) (Mouse) Duplicate
Arthropods
Insects
Heliconius numata Incomplete
Nematodes
Loa loa v3.3 (Eye worm) Request
Wuchereria bancrofti v1.0 (Agent of lymphatic filariasis) Request
Brugia malayi v1.0 (Agent of lymphatic filariasis) Duplicate
Plants
Eudicots
Pea family
Lotus japonicus Early assembly
Rose family
Malus x domestica (Apple tree) Duplicate
Spurge family
Ricinus communis (Castor bean) Early assembly
Nightshade family
Nicotiana benthamiana 0.4.4 Early draft
Solanum pimpinellifolium A-1.0 (Currant tomato) Early draft
Solanum lycopersicum v2.3 (Tomato) Early assembly
Monocots
Palm family
Phoenix dactylifera (Date palm) Early draft
Gymnosperms
Pine family
Pinus sylvestris (Scotch pine) Incomplete
Picea sitchensis (Sitka spruce) Incomplete
Fungi
Basidiomycetes
Moniliophthora perniciosa FA553 Genome survey
Microsporidians
Encephalitozoon intestinalis endoparasite
Encephalitozoon cuniculi endoparasite
Protists
Cryptophyta
Guillardia theta nucleomorph
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Sequence collections
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