Curation of Human, Yeast, and E. coli proteins
We've set up a new way to look at PiQSi's data: you can now browse and curate proteins by organism, and
currently we included Human, Yeast, and E. coli.
We chose these three organisms because, one out of three proteins in PDB belongs to one of them! This high coverage offers a unique opportunity to carry out
genomic studies while taking into account the quaternary structure of proteins. However, for such studies one needs a dataset where the quaternary
structure is decribed accurately.
The idea is simple: the table below indicates the number of genes in all three organisms for which a structure was found (sequence identity >= 98%, gene coverage >50%). You can now either click on the "#Total" number to display structures that still need to be curated, or click on (d) in order to download each dataset.
|
| #Genes
(Unique)
| #PDBs
(Total)
| #PDBs
(NR100)
| #PDBs
(NR90)
|
|
| Human
|
|
|
|
|
| #Total (d = download) |
| #correct | - | #error
|
|
| Yeast
|
|
|
|
| |
| E. coli
|
|
|
|
| |