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Home > SCOP hierarchy > Ribosomal protein L30p/L7e > Alignments

Ribosomal protein L30p/L7e alignments

These alignments are sequences aligned to the 0035770 model.

Sophisticated options are available for refining alignments:

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The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                 10        20        30        40        50        60                               
                  |         |         |         |         |         |                               
d1bxya_ .MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVV-e..............................
d1ffkt_ m---HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGE--psqetletvlatraeplegdadvddewvaeh


                                                                           
                                                                           
d1bxya_ ...................................................................
d1ffkt_ tdyddisglafallseettlreqglsptlrlhpprgghdgvkhpvkeggqlgkhdtegiddlleamr


Statistics on alignment.	Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

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Try aligning to a different model
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Add alignments from genomes

Add your sequences to the alignment:

Members of the same:	including
Include all superfamily members:	, or just those assigned by the selected model:
Initial T99 seed sequence:	NoYes

You may enter many sequences at once using FASTA format:

Upload a multiple sequence FASTA file:

Model: 0035770 (list models)

Initial SAMT99 seed:
Alignment:

Display Options:

Output in FASTA-like format:	NoYes
Output column indices:	NoYes
Sequence index (number) on each line:	NoYes

Max number of insertions shown:	(0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than:	residues

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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.

Select to display	Genome
NoYes	Deinococcus radiodurans R1
NoYes	Thermus sp. CCB_US3_UF1
NoYes	Thermus scotoductus SA-01
NoYes	Thermus thermophilus HB27
NoYes	Haemophilus parasuis SH0165
NoYes	Oceanimonas sp. GK1
NoYes	Tolumonas auensis DSM 9187
NoYes	Aeromonas veronii B565
NoYes	Aeromonas salmonicida subsp. salmonicida A449
NoYes	Aeromonas hydrophila subsp. hydrophila ATCC 7966
NoYes	Vibrio anguillarum 775
NoYes	Vibrio vulnificus MO6-24/O
NoYes	Idiomarina loihiensis L2TR
NoYes	Ferrimonas balearica DSM 9799
NoYes	Shewanella sp. MR-4
NoYes	Shewanella amazonensis SB2B
NoYes	Photorhabdus asymbiotica
NoYes	Photorhabdus luminescens subsp. laumondii TTO1
NoYes	Xenorhabdus bovienii SS-2004
NoYes	Xenorhabdus nematophila ATCC 19061
NoYes	Providencia stuartii MRSN 2154
NoYes	Proteus mirabilis HI4320
NoYes	Edwardsiella ictaluri 93-146
NoYes	Rahnella sp. Y9602
NoYes	Rahnella aquatilis CIP 78.65 = ATCC 33071
NoYes	Yersinia pseudotuberculosis IP 31758
NoYes	Yersinia enterocolitica subsp. enterocolitica 8081
NoYes	Serratia sp. AS12
NoYes	Serratia sp. ATCC 39006
NoYes	Serratia plymuthica AS9
NoYes	Serratia proteamaculans 568
NoYes	Dickeya dadantii Ech703
NoYes	Dickeya zeae Ech1591
NoYes	Pectobacterium wasabiae WPP163
NoYes	Pectobacterium atrosepticum SCRI1043
NoYes	Pectobacterium carotovorum subsp. carotovorum PC1
NoYes	Sodalis glossinidius str. 'morsitans'
NoYes	Pantoea sp. At-9b
NoYes	Pantoea vagans C9-1
NoYes	Pantoea ananatis LMG 20103
NoYes	Erwinia tasmaniensis Et1/99
NoYes	Erwinia sp. Ejp617
NoYes	Erwinia billingiae Eb661
NoYes	Erwinia pyrifoliae Ep1/96
NoYes	Erwinia amylovora ATCC 49946
NoYes	Escherichia blattae DSM 4481
NoYes	Cronobacter turicensis z3032
NoYes	Cronobacter sakazakii ES15
NoYes	secondary endosymbiont of Ctenarytaina eucalypti
NoYes	Enterobacteriaceae bacterium strain FGI 57
NoYes	Shigella sonnei Ss046
NoYes	Shigella flexneri 5 str. 8401
NoYes	Shigella dysenteriae Sd197
NoYes	Shigella boydii CDC 3083-94
NoYes	Salmonella bongori NCTC 12419
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
NoYes	Klebsiella oxytoca E718
NoYes	Klebsiella variicola At-22
NoYes	Klebsiella pneumoniae NTUH-K2044
NoYes	Enterobacter aerogenes KCTC 2190
NoYes	Escherichia fergusonii ATCC 35469
NoYes	Escherichia coli 'BL21-Gold(DE3)pLysS AG'
NoYes	Enterobacter sp. R4-368
NoYes	Enterobacter sp. 638
NoYes	Enterobacter asburiae LF7a
NoYes	Enterobacter cloacae subsp. dissolvens SDM
NoYes	Citrobacter rodentium ICC168
NoYes	Citrobacter koseri ATCC BAA-895
NoYes	Nanoarchaeum equitans Kin4-M
NoYes	Candidatus Korarchaeum cryptofilum OPF8
NoYes	Pyrolobus fumarii 1A
NoYes	Hyperthermus butylicus DSM 5456
NoYes	Ignisphaera aggregans DSM 17230
NoYes	Desulfurococcus fermentans DSM 16532
NoYes	Desulfurococcus kamchatkensis 1221n
NoYes	Desulfurococcus mucosus DSM 2162
NoYes	halophilic archaeon DL31
NoYes	Methanocella arvoryzae MRE50
NoYes	Methanocella conradii HZ254
NoYes	Methanocella paludicola SANAE
NoYes	Methanosaeta harundinacea 6Ac
NoYes	Methanosaeta thermophila PT
NoYes	Methanosaeta concilii GP6
NoYes	Methanosalsum zhilinae DSM 4017
NoYes	Methanohalobium evestigatum Z-7303
NoYes	Methanococcoides burtonii DSM 6242
NoYes	Methanosarcina acetivorans C2A
NoYes	Methanosarcina mazei Go1
NoYes	Methanosarcina barkeri str. Fusaro
NoYes	Methanohalophilus mahii DSM 5219
NoYes	Methanosphaerula palustris E1-9c
NoYes	Methanoregula boonei 6A8
NoYes	Methanospirillum hungatei JF-1
NoYes	Methanocorpusculum labreanum Z
NoYes	Methanoplanus petrolearius DSM 11571
NoYes	Methanoculleus bourgensis MS2
NoYes	Methanoculleus marisnigri JR1
NoYes	Methanopyrus kandleri AV19
NoYes	Ferroglobus placidus DSM 10642
NoYes	Archaeoglobus profundus DSM 5631
NoYes	Archaeoglobus veneficus SNP6
NoYes	Archaeoglobus fulgidus DSM 4304
NoYes	Thermococcus sp. 4557
NoYes	Thermococcus onnurineus NA1
NoYes	Thermococcus kodakarensis KOD1
NoYes	Thermococcus gammatolerans EJ3
NoYes	Thermococcus sibiricus MM 739
NoYes	Thermococcus barophilus MP
NoYes	Pyrococcus sp. ST04
NoYes	Pyrococcus yayanosii CH1
NoYes	Pyrococcus horikoshii OT3
NoYes	Pyrococcus abyssi GE5
NoYes	Pyrococcus furiosus COM1
NoYes	Thermoplasmatales archaeon BRNA1
NoYes	Picrophilus torridus DSM 9790
NoYes	Salinarchaeum sp. Harcht-Bsk1
NoYes	Halopiger xanaduensis SH-6
NoYes	Methanobacterium sp. AL-21
NoYes	Haloterrigena turkmenica DSM 5511
NoYes	Natrinema sp. J7-2
NoYes	Natrialba magadii ATCC 43099
NoYes	Halorubrum lacusprofundi ATCC 49239
NoYes	Haloquadratum walsbyi DSM 16790
NoYes	Halogeometricum borinquense DSM 11551
NoYes	Haloferax mediterranei ATCC 33500
NoYes	Haloferax volcanii DS2
NoYes	Halomicrobium mukohataei DSM 12286
NoYes	Halorhabdus utahensis DSM 12940
NoYes	Natronomonas pharaonis DSM 2160
NoYes	Haloarcula hispanica ATCC 33960
NoYes	Haloarcula marismortui ATCC 43049
NoYes	Halalkalicoccus jeotgali B3
NoYes	Halobacterium salinarum R1
NoYes	Halobacterium sp. NRC-1
NoYes	Methanotorris igneus Kol 5
NoYes	Methanocaldococcus sp. FS406-22
NoYes	Methanocaldococcus fervens AG86
NoYes	Methanocaldococcus vulcanius M7
NoYes	methanocaldococcus infernus ME
NoYes	Methanocaldococcus jannaschii DSM 2661
NoYes	Methanothermococcus okinawensis IH1
NoYes	Methanococcus aeolicus Nankai-3
NoYes	Methanococcus maripaludis C5
NoYes	Methanococcus voltae A3
NoYes	Methanococcus vannielii SB
NoYes	Methanothermus fervidus DSM 2088
NoYes	Methanothermobacter marburgensis str. Marburg
NoYes	Methanothermobacter thermautotrophicus str. Delta H
NoYes	Methanosphaera stadtmanae DSM 3091
NoYes	Methanobrevibacter sp. AbM4
NoYes	Methanobrevibacter ruminantium M1
NoYes	Methanobrevibacter smithii ATCC 35061
NoYes	Complete genome sequence of Methanobacterium sp. Mb1
NoYes	Aciduliprofundum sp. MAR08-339
NoYes	Aciduliprofundum boonei T469
NoYes	Thermus oshimai JL-2
NoYes	Thermus thermophilus JL-18
NoYes	Thermus thermophilus SG0.5JP17-16
NoYes	Thermus thermophilus HB8
NoYes	Haemophilus parasuis ZJ0906
NoYes	Aeromonas hydrophila ML09-119
NoYes	Vibrio anguillarum Listonella anguillarum M3
NoYes	Vibrio nigripulchritudo VibrioScope
NoYes	Vibrio vulnificus CMCP6
NoYes	Vibrio vulnificus YJ016
NoYes	Idiomarina loihiensis GSL 199
NoYes	Shewanella sp. ANA-3
NoYes	Shewanella sp. MR-7
NoYes	Proteus mirabilis BB2000
NoYes	Morganella morganii subsp. morganii KT
NoYes	Edwardsiella tarda C07-087
NoYes	Edwardsiella tarda FL6-60
NoYes	Rahnella aquatilis HX2
NoYes	Yersinia pseudotuberculosis PB1/+
NoYes	Yersinia pseudotuberculosis YPIII
NoYes	Yersinia pseudotuberculosis IP 32953
NoYes	Yersinia pestis biovar Microtus str. 91001
NoYes	Yersinia pestis A1122
NoYes	Yersinia pestis biovar Medievalis str. Harbin 35
NoYes	Yersinia pestis Nepal516
NoYes	Yersinia pestis Antiqua
NoYes	Yersinia pestis CO92
NoYes	Yersinia pestis KIM10+
NoYes	Yersinia enterocolitica subsp. palearctica 105.5R(r)
NoYes	Yersinia enterocolitica subsp. palearctica Y11
NoYes	Serratia sp. AS13
NoYes	Serratia plymuthica S13
NoYes	Serratia plymuthica 4Rx13
NoYes	Serratia marcescens FGI94
NoYes	Serratia liquefaciens ATCC 27592
NoYes	Dickeya dadantii Ech586
NoYes	Dickeya dadantii 3937
NoYes	Pectobacterium carotovorum subsp. carotovorum PCC21
NoYes	Pantoea ananatis LMG 5342
NoYes	Pantoea ananatis PA13
NoYes	Pantoea ananatis AJ13355
NoYes	Erwinia pyrifoliae DSM 12163
NoYes	Erwinia amylovora CFBP1430
NoYes	Cronobacter sakazakii CMCC 45402
NoYes	Cronobacter sakazakii SP291
NoYes	Cronobacter sakazakii ATCC BAA-894
NoYes	secondary endosymbiont of Heteropsylla cubana Thao2000
NoYes	Raoultella ornithinolytica B6
NoYes	Shigella sonnei 53G
NoYes	Shigella flexneri 2002017
NoYes	Shigella flexneri 2a str. 2457T
NoYes	Shigella flexneri 2a str. 301
NoYes	Shigella dysenteriae 1617
NoYes	Shigella boydii Sb227
NoYes	Salmonella bongori N268-08
NoYes	Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980
NoYes	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
NoYes	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992
NoYes	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
NoYes	Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050
NoYes	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
NoYes	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
NoYes	Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1
NoYes	Salmonella enterica subsp. enterica serovar Newport str. SL254
NoYes	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. U288
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 798
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
NoYes	Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. CT18
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
NoYes	Salmonella enterica serovar Bovismorbificans genomics
NoYes	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189
NoYes	Salmonella enterica subsp. enterica serovar Agona str. 24249
NoYes	Salmonella enterica subsp. enterica serovar Agona str. SL483
NoYes	Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NoYes	Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. B182
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. 41578
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
NoYes	Salmonella enterica subsp. enterica serovar Pullorum str. S06004
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078
NoYes	Salmonella enterica subsp. enterica serovar Thompson str. RM6836
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
NoYes	Klebsiella oxytoca KCTC 1686
NoYes	Klebsiella pneumoniae JM45
NoYes	Klebsiella pneumoniae CG43
NoYes	Klebsiella pneumoniae KCTC 2242
NoYes	Klebsiella pneumoniae 342
NoYes	Klebsiella pneumoniae subsp. pneumoniae 1084
NoYes	Klebsiella pneumoniae subsp. pneumoniae HS11286
NoYes	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
NoYes	Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
NoYes	Enterobacter aerogenes EA1509E
NoYes	Escherichia coli E24377A
NoYes	Escherichia coli E. coli PMV-1
NoYes	Escherichia coli JJ1886
NoYes	Escherichia coli LY180
NoYes	Escherichia coli APEC O78
NoYes	Escherichia coli O7:K1 str. CE10
NoYes	Escherichia coli O104:H4 str. 2009EL-2050
NoYes	Escherichia coli O104:H4 str. 2009EL-2071
NoYes	Escherichia coli O104:H4 str. 2011C-3493
NoYes	Escherichia coli NA114
NoYes	Escherichia coli P12b
NoYes	Escherichia coli str. 'clone D i2'
NoYes	Escherichia coli str. 'clone D i14'
NoYes	Escherichia coli UM146
NoYes	Escherichia coli 042
NoYes	Escherichia coli Xuzhou21
NoYes	Escherichia coli IHE3034
NoYes	Escherichia coli UMNK88
NoYes	Escherichia coli O83:H1 str. NRG 857C
NoYes	Escherichia coli ABU 83972
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli LF82
NoYes	Escherichia coli ED1a
NoYes	Escherichia coli IAI39
NoYes	Escherichia coli UMN026
NoYes	Escherichia coli 55989
NoYes	Escherichia coli S88
NoYes	Escherichia coli IAI1
NoYes	Escherichia coli W
NoYes	Escherichia coli W
NoYes	Escherichia coli DH1
NoYes	Escherichia coli DH1
NoYes	Escherichia coli ATCC 8739
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli SMS-3-5
NoYes	Escherichia coli SE15
NoYes	Escherichia coli SE11
NoYes	Escherichia coli O103:H2 str. 12009
NoYes	Escherichia coli UTI89
NoYes	Escherichia coli 536
NoYes	Escherichia coli HS
NoYes	Escherichia coli ETEC H10407
NoYes	Escherichia coli O55:H7 str. RM12579
NoYes	Escherichia coli O55:H7 str. CB9615
NoYes	Escherichia coli O26:H11 str. 11368
NoYes	Escherichia coli CFT073
NoYes	Escherichia coli O111:H- str. 11128
NoYes	Escherichia coli O127:H6 str. E2348/69
NoYes	Escherichia coli O157:H7 str. TW14359
NoYes	Escherichia coli O157:H7 str. EC4115
NoYes	Escherichia coli O157:H7 str. Sakai
NoYes	Escherichia coli O157:H7 str. EDL933
NoYes	Escherichia coli str. K-12 substr. MDS42
NoYes	Escherichia coli BW2952
NoYes	Escherichia coli str. K-12 substr. MG1655
NoYes	Escherichia coli str. K-12 substr. W3110
NoYes	Escherichia coli str. K-12 substr. DH10B
NoYes	Escherichia coli B str. REL606
NoYes	Enterobacter cloacae SCF1
NoYes	Enterobacter cloacae EcWSU1
NoYes	Enterobacter cloacae subsp. cloacae ENHKU01
NoYes	Enterobacter cloacae subsp. cloacae NCTC 9394
NoYes	Enterobacter cloacae subsp. cloacae ATCC 13047
NoYes	Methanomethylovorans hollandica DSM 15978
NoYes	Methanosarcina mazei Tuc01
NoYes	Methanoregula formicica Methanoregula formicicum SMSP
NoYes	Archaeoglobus sulfaticallidus PM70-1
NoYes	Thermococcus sp. AM4
NoYes	Thermococcus sp. CL1
NoYes	Thermococcus litoralis DSM 5473
NoYes	Pyrococcus sp. NA2
NoYes	Pyrococcus furiosus DSM 3638
NoYes	Candidatus Methanomethylophilus alvus Mx1201
NoYes	Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
NoYes	Halovivax ruber XH-70
NoYes	Natrinema pellirubrum DSM 15624
NoYes	Natronococcus occultus SP4
NoYes	Natronobacterium gregoryi SP2
NoYes	Haloquadratum walsbyi C23
NoYes	Halorhabdus tiamatea SARL4B
NoYes	Natronomonas moolapensis 8.8.11
NoYes	Haloarcula hispanica N601
NoYes	Methanococcus maripaludis X1
NoYes	Methanococcus maripaludis C6
NoYes	Methanococcus maripaludis C7
NoYes	Methanococcus maripaludis S2
NoYes	Methanobacterium sp. SWAN-1
NoYes	2_050719S (meta-genome)
NoYes	3_050719R (meta-genome)
NoYes	Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)
NoYes	Atta cephalotes fungus garden (ACEF) (meta-genome)
NoYes	Bath Hot Springs, planktonic community (meta-genome)
NoYes	Combined (meta-genome)
NoYes	Cyphomyrmex longiscapus fungus garden (meta-genome)
NoYes	Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)
NoYes	Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)
NoYes	Endophytic microbiome from Rice (meta-genome)
NoYes	Fungus garden combined (combined) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)
NoYes	Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)
NoYes	Human Gut Community Subject 7 (meta-genome)
NoYes	Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)
NoYes	NCBI 2017_08 genome
NoYes	STRING v9.0.5 (STRING)
NoYes	Uniprot 2018_03 genome
NoYes	Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)
NoYes	Global Ocean Sampling Expedition (GOS)
NoYes	PDB chains (SCOP 1.75) (PDB)
NoYes	Protein Data Bank (all PDB sequenc)
NoYes	SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes	TargetDB (Targets)
NoYes	The Salmonella enterica Pan-genome (meta-genome)
NoYes	ALL (only advised for small superfamilies)

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Ribosomal protein L30p/L7e alignments