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Home > SCOP hierarchy > Periplasmic chaperone C-domain > Alignments for region 187-269 from gi|62178591|ref|YP_215008.1|

Periplasmic chaperone C-domain alignments

These alignments are sequences aligned to the 0042170 model.

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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                       10        20        30        40        50   
                                                        |         |         |         |         |   
d1p5va2                              kgt---PIQF.......AENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTW
gi|62178591|ref|YP_215008.1|:187-269 ...FIRPKNLaeapahaPSTLRCRNERGQLTITNPSPYYVSMVELYSAGKKLPNTMVPPKGAI


                                          60        70        80         
                                           |         |         |         
d1p5va2                              AFDLPKGLAGARNVSWRIINDQGGLDRLYS---knv
gi|62178591|ref|YP_215008.1|:187-269 TLPA-----TPGQVSLRTVNDFGATTP------a..


Statistics on alignment.	Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

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Add your sequences to the alignment:

Members of the same:	including
Include all superfamily members:	, or just those assigned by the selected model:
Initial T99 seed sequence:	NoYes

You may enter many sequences at once using FASTA format:

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Model: 0042170 (list models)

Initial SAMT99 seed:
Alignment:

Display Options:

Output in FASTA-like format:	NoYes
Output column indices:	NoYes
Sequence index (number) on each line:	NoYes

Max number of insertions shown:	(0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than:	residues

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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.

Select to display	Genome
NoYes	Thelohanellus kitauei
NoYes	Amphimedon queenslandica
NoYes	Phytophthora capsici
NoYes	Chromobacterium violaceum ATCC 12472
NoYes	Burkholderia rhizoxinica HKI 454
NoYes	Burkholderia phytofirmans PsJN
NoYes	Burkholderia xenovorans LB400
NoYes	Ralstonia eutropha JMP134
NoYes	Cupriavidus taiwanensis LMG 19424
NoYes	Cupriavidus metallidurans CH34
NoYes	Ralstonia eutropha H16
NoYes	Ralstonia pickettii 12D
NoYes	Burkholderia sp. RPE64
NoYes	Burkholderia sp. CCGE1002
NoYes	Burkholderia thailandensis E264
NoYes	Burkholderia pseudomallei 1106a
NoYes	Burkholderia mallei SAVP1
NoYes	Burkholderia ambifaria AMMD
NoYes	Burkholderia cenocepacia HI2424
NoYes	Burkholderia multivorans ATCC 17616
NoYes	Burkholderia vietnamiensis G4
NoYes	Burkholderia gladioli BSR3
NoYes	Burkholderia glumae BGR1
NoYes	Delftia sp. Cs1-4
NoYes	Delftia acidovorans SPH-1
NoYes	Comamonas testosteroni CNB-2
NoYes	Collimonas fungivorans Ter331
NoYes	Advenella kashmirensis WT001
NoYes	Bordetella petrii DSM 12804
NoYes	Bordetella avium 197N
NoYes	Bordetella pertussis Tohama I
NoYes	Bordetella parapertussis 12822
NoYes	Bordetella bronchiseptica RB50
NoYes	Achromobacter xylosoxidans A8
NoYes	Achromobacter xylosoxidans
NoYes	Gallibacterium anatis UMN179
NoYes	Haemophilus ducreyi 35000HP
NoYes	Aeromonas veronii B565
NoYes	Aeromonas salmonicida subsp. salmonicida A449
NoYes	Aeromonas hydrophila subsp. hydrophila ATCC 7966
NoYes	Vibrio harveyi ATCC BAA-1116
NoYes	Vibrio furnissii NCTC 11218
NoYes	Shewanella sp. MR-4
NoYes	Shewanella putrefaciens CN-32
NoYes	Alcanivorax borkumensis SK2
NoYes	Frateuria aurantia DSM 6220
NoYes	Pseudoxanthomonas suwonensis 11-1
NoYes	Stenotrophomonas maltophilia K279a
NoYes	Xylella fastidiosa M23
NoYes	Photorhabdus asymbiotica
NoYes	Photorhabdus luminescens subsp. laumondii TTO1
NoYes	Xenorhabdus bovienii SS-2004
NoYes	Xenorhabdus nematophila ATCC 19061
NoYes	Providencia stuartii MRSN 2154
NoYes	Proteus mirabilis HI4320
NoYes	Edwardsiella ictaluri 93-146
NoYes	Edwardsiella tarda EIB202
NoYes	Rahnella sp. Y9602
NoYes	Rahnella aquatilis CIP 78.65 = ATCC 33071
NoYes	Yersinia pseudotuberculosis IP 31758
NoYes	Yersinia pestis Pestoides F
NoYes	Yersinia enterocolitica subsp. enterocolitica 8081
NoYes	Serratia sp. AS12
NoYes	Serratia symbiotica str. 'Cinara cedri'
NoYes	Serratia plymuthica AS9
NoYes	Serratia proteamaculans 568
NoYes	Pectobacterium wasabiae WPP163
NoYes	Pectobacterium sp. SCC3193
NoYes	Pectobacterium atrosepticum SCRI1043
NoYes	Pectobacterium carotovorum subsp. carotovorum PC1
NoYes	Pantoea vagans C9-1
NoYes	Pantoea ananatis LMG 20103
NoYes	Erwinia tasmaniensis Et1/99
NoYes	Erwinia sp. Ejp617
NoYes	Erwinia billingiae Eb661
NoYes	Erwinia pyrifoliae Ep1/96
NoYes	Erwinia amylovora ATCC 49946
NoYes	Escherichia blattae DSM 4481
NoYes	Cronobacter turicensis z3032
NoYes	Cronobacter sakazakii ES15
NoYes	Enterobacteriaceae bacterium strain FGI 57
NoYes	Shigella sonnei Ss046
NoYes	Shigella flexneri 5 str. 8401
NoYes	Shigella dysenteriae Sd197
NoYes	Shigella boydii CDC 3083-94
NoYes	Salmonella bongori NCTC 12419
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
NoYes	Klebsiella oxytoca E718
NoYes	Klebsiella variicola At-22
NoYes	Klebsiella pneumoniae NTUH-K2044
NoYes	Enterobacter aerogenes KCTC 2190
NoYes	Escherichia fergusonii ATCC 35469
NoYes	Escherichia coli 'BL21-Gold(DE3)pLysS AG'
NoYes	Enterobacter sp. R4-368
NoYes	Enterobacter sp. 638
NoYes	Enterobacter asburiae LF7a
NoYes	Enterobacter cloacae subsp. dissolvens SDM
NoYes	Citrobacter rodentium ICC168
NoYes	Citrobacter koseri ATCC BAA-895
NoYes	Pseudomonas sp. TKP
NoYes	Pseudomonas sp. UW4
NoYes	Pseudomonas syringae pv. tomato str. DC3000
NoYes	Pseudomonas putida F1
NoYes	Pseudomonas protegens Pf-5
NoYes	Pseudomonas fluorescens SBW25
NoYes	Pseudomonas aeruginosa UCBPP-PA14
NoYes	Pseudomonas sp. VLB120
NoYes	Psychrobacter sp. PRwf-1
NoYes	Acinetobacter oleivorans DR1
NoYes	Acinetobacter calcoaceticus PHEA-2
NoYes	Acinetobacter baumannii ATCC 17978
NoYes	Acinetobacter sp. ADP1
NoYes	Oryza sativa ssp. Indica - Long-grained rice
NoYes	Ralstonia pickettii 12J
NoYes	Burkholderia sp. YI23
NoYes	Burkholderia sp. KJ006
NoYes	Burkholderia pseudomallei MSHR305
NoYes	Burkholderia pseudomallei NCTC 13179
NoYes	Burkholderia pseudomallei BPC006
NoYes	Burkholderia pseudomallei 1026b
NoYes	Burkholderia pseudomallei MSHR346
NoYes	Burkholderia pseudomallei 668
NoYes	Burkholderia pseudomallei 1710b
NoYes	Burkholderia pseudomallei K96243
NoYes	Burkholderia mallei NCTC 10229
NoYes	Burkholderia mallei NCTC 10247
NoYes	Burkholderia mallei ATCC 23344
NoYes	Burkholderia lata
NoYes	Burkholderia ambifaria MC40-6
NoYes	Burkholderia cenocepacia MC0-3
NoYes	Burkholderia cenocepacia AU 1054
NoYes	Burkholderia cenocepacia J2315
NoYes	Burkholderia multivorans ATCC 17616
NoYes	Burkholderia cepacia GG4
NoYes	Variovorax paradoxus EPS
NoYes	Bordetella pertussis CS
NoYes	Bordetella parapertussis 18323
NoYes	Bordetella parapertussis Bpp5
NoYes	Bordetella bronchiseptica MO149
NoYes	Bordetella bronchiseptica 253
NoYes	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
NoYes	Haemophilus parasuis ZJ0906
NoYes	Haemophilus influenzae KR494
NoYes	Haemophilus influenzae F3047
NoYes	Haemophilus influenzae F3031
NoYes	Haemophilus influenzae PittGG
NoYes	Haemophilus influenzae R2866
NoYes	Aeromonas hydrophila ML09-119
NoYes	Shewanella sp. W3-18-1
NoYes	Shewanella baltica OS223
NoYes	Shewanella sp. MR-7
NoYes	Shewanella putrefaciens 200
NoYes	Alcanivorax dieselolei B5
NoYes	Stenotrophomonas maltophilia D457
NoYes	Stenotrophomonas maltophilia JV3
NoYes	Stenotrophomonas maltophilia R551-3
NoYes	Xylella fastidiosa subsp. fastidiosa GB514
NoYes	Xylella fastidiosa M12
NoYes	Xylella fastidiosa Temecula1
NoYes	Xylella fastidiosa 9a5c
NoYes	Proteus mirabilis BB2000
NoYes	Morganella morganii subsp. morganii KT
NoYes	Edwardsiella tarda C07-087
NoYes	Edwardsiella tarda FL6-60
NoYes	Rahnella aquatilis HX2
NoYes	Yersinia pseudotuberculosis PB1/+
NoYes	Yersinia pseudotuberculosis YPIII
NoYes	Yersinia pseudotuberculosis IP 32953
NoYes	Yersinia pestis biovar Microtus str. 91001
NoYes	Yersinia pestis A1122
NoYes	Yersinia pestis Z176003
NoYes	Yersinia pestis D182038
NoYes	Yersinia pestis D106004
NoYes	Yersinia pestis biovar Medievalis str. Harbin 35
NoYes	Yersinia pestis Nepal516
NoYes	Yersinia pestis Antiqua
NoYes	Yersinia pestis Angola
NoYes	Yersinia pestis CO92
NoYes	Yersinia pestis KIM10+
NoYes	Yersinia enterocolitica subsp. palearctica 105.5R(r)
NoYes	Yersinia enterocolitica subsp. palearctica Y11
NoYes	Serratia sp. AS13
NoYes	Serratia plymuthica S13
NoYes	Serratia plymuthica 4Rx13
NoYes	Serratia marcescens FGI94
NoYes	Serratia marcescens WW4
NoYes	Serratia liquefaciens ATCC 27592
NoYes	Pectobacterium carotovorum subsp. carotovorum PCC21
NoYes	Pantoea ananatis LMG 5342
NoYes	Pantoea ananatis PA13
NoYes	Pantoea ananatis AJ13355
NoYes	Erwinia pyrifoliae DSM 12163
NoYes	Erwinia amylovora CFBP1430
NoYes	Cronobacter sakazakii CMCC 45402
NoYes	Cronobacter sakazakii SP291
NoYes	Cronobacter sakazakii ATCC BAA-894
NoYes	Raoultella ornithinolytica B6
NoYes	Shigella sonnei 53G
NoYes	Shigella flexneri 2002017
NoYes	Shigella flexneri 2a str. 2457T
NoYes	Shigella flexneri 2a str. 301
NoYes	Shigella dysenteriae 1617
NoYes	Shigella boydii Sb227
NoYes	Salmonella bongori N268-08
NoYes	Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980
NoYes	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
NoYes	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992
NoYes	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
NoYes	Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050
NoYes	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
NoYes	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
NoYes	Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1
NoYes	Salmonella enterica subsp. enterica serovar Newport str. SL254
NoYes	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. U288
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 798
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
NoYes	Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. CT18
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
NoYes	Salmonella enterica serovar Bovismorbificans genomics
NoYes	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189
NoYes	Salmonella enterica subsp. enterica serovar Agona str. 24249
NoYes	Salmonella enterica subsp. enterica serovar Agona str. SL483
NoYes	Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NoYes	Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. B182
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. 41578
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
NoYes	Salmonella enterica subsp. enterica serovar Pullorum str. S06004
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078
NoYes	Salmonella enterica subsp. enterica serovar Thompson str. RM6836
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
NoYes	Klebsiella oxytoca KCTC 1686
NoYes	Klebsiella pneumoniae JM45
NoYes	Klebsiella pneumoniae CG43
NoYes	Klebsiella pneumoniae KCTC 2242
NoYes	Klebsiella pneumoniae 342
NoYes	Klebsiella pneumoniae subsp. pneumoniae 1084
NoYes	Klebsiella pneumoniae subsp. pneumoniae HS11286
NoYes	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
NoYes	Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
NoYes	Enterobacter aerogenes EA1509E
NoYes	Escherichia coli E24377A
NoYes	Escherichia coli E. coli PMV-1
NoYes	Escherichia coli JJ1886
NoYes	Escherichia coli LY180
NoYes	Escherichia coli APEC O78
NoYes	Escherichia coli O7:K1 str. CE10
NoYes	Escherichia coli O104:H4 str. 2009EL-2050
NoYes	Escherichia coli O104:H4 str. 2009EL-2071
NoYes	Escherichia coli O104:H4 str. 2011C-3493
NoYes	Escherichia coli NA114
NoYes	Escherichia coli P12b
NoYes	Escherichia coli str. 'clone D i2'
NoYes	Escherichia coli str. 'clone D i14'
NoYes	Escherichia coli UM146
NoYes	Escherichia coli 042
NoYes	Escherichia coli Xuzhou21
NoYes	Escherichia coli IHE3034
NoYes	Escherichia coli UMNK88
NoYes	Escherichia coli O83:H1 str. NRG 857C
NoYes	Escherichia coli ABU 83972
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli LF82
NoYes	Escherichia coli ED1a
NoYes	Escherichia coli IAI39
NoYes	Escherichia coli UMN026
NoYes	Escherichia coli 55989
NoYes	Escherichia coli S88
NoYes	Escherichia coli IAI1
NoYes	Escherichia coli W
NoYes	Escherichia coli W
NoYes	Escherichia coli DH1
NoYes	Escherichia coli DH1
NoYes	Escherichia coli ATCC 8739
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli SMS-3-5
NoYes	Escherichia coli SE15
NoYes	Escherichia coli SE11
NoYes	Escherichia coli APEC O1
NoYes	Escherichia coli O103:H2 str. 12009
NoYes	Escherichia coli UTI89
NoYes	Escherichia coli 536
NoYes	Escherichia coli HS
NoYes	Escherichia coli ETEC H10407
NoYes	Escherichia coli O55:H7 str. RM12579
NoYes	Escherichia coli O55:H7 str. CB9615
NoYes	Escherichia coli O26:H11 str. 11368
NoYes	Escherichia coli CFT073
NoYes	Escherichia coli O111:H- str. 11128
NoYes	Escherichia coli O127:H6 str. E2348/69
NoYes	Escherichia coli O157:H7 str. TW14359
NoYes	Escherichia coli O157:H7 str. EC4115
NoYes	Escherichia coli O157:H7 str. Sakai
NoYes	Escherichia coli O157:H7 str. EDL933
NoYes	Escherichia coli str. K-12 substr. MDS42
NoYes	Escherichia coli BW2952
NoYes	Escherichia coli str. K-12 substr. MG1655
NoYes	Escherichia coli str. K-12 substr. W3110
NoYes	Escherichia coli str. K-12 substr. DH10B
NoYes	Escherichia coli B str. REL606
NoYes	Enterobacter cloacae SCF1
NoYes	Enterobacter cloacae EcWSU1
NoYes	Enterobacter cloacae subsp. cloacae ENHKU01
NoYes	Enterobacter cloacae subsp. cloacae NCTC 9394
NoYes	Enterobacter cloacae subsp. cloacae ATCC 13047
NoYes	Pseudomonas denitrificans ATCC 13867
NoYes	Pseudomonas syringae pv. phaseolicola 1448A
NoYes	Pseudomonas syringae pv. syringae B728a
NoYes	Pseudomonas monteilii SB3101
NoYes	Pseudomonas monteilii SB3078
NoYes	Pseudomonas putida H8234
NoYes	Pseudomonas putida HB3267
NoYes	Pseudomonas putida NBRC 14164
NoYes	Pseudomonas putida DOT-T1E
NoYes	Pseudomonas putida S16
NoYes	Pseudomonas putida BIRD-1
NoYes	Pseudomonas putida W619
NoYes	Pseudomonas putida ND6
NoYes	Pseudomonas putida KT2440
NoYes	Pseudomonas putida GB-1
NoYes	Pseudomonas protegens CHA0
NoYes	Pseudomonas poae RE*1-1-14
NoYes	Pseudomonas fluorescens A506
NoYes	Pseudomonas fluorescens R124
NoYes	Pseudomonas fluorescens Pf0-1
NoYes	Pseudomonas resinovorans NBRC 106553
NoYes	Pseudomonas aeruginosa SCV20265
NoYes	Pseudomonas aeruginosa MTB-1
NoYes	Pseudomonas aeruginosa LES431
NoYes	Pseudomonas aeruginosa RP73
NoYes	Pseudomonas aeruginosa B136-33
NoYes	Pseudomonas aeruginosa PA1R
NoYes	Pseudomonas aeruginosa PA1
NoYes	Pseudomonas aeruginosa DK2
NoYes	Pseudomonas aeruginosa NCGM2.S1
NoYes	Pseudomonas aeruginosa M18
NoYes	Pseudomonas aeruginosa LESB58
NoYes	Pseudomonas aeruginosa PA7
NoYes	Pseudomonas aeruginosa PAO1
NoYes	Acinetobacter genomosp. 13TU RUH2624
NoYes	Acinetobacter sp. SH024
NoYes	Acinetobacter calcoaceticus ruh2202
NoYes	Acinetobacter baumannii ZW85-1
NoYes	Acinetobacter baumannii TYTH-1
NoYes	Acinetobacter baumannii BJAB0868
NoYes	Acinetobacter baumannii BJAB0715
NoYes	Acinetobacter baumannii BJAB07104
NoYes	Acinetobacter baumannii TCDC-AB0715
NoYes	Acinetobacter baumannii D1279779
NoYes	Acinetobacter baumannii MDR-TJ
NoYes	Acinetobacter baumannii 1656-2
NoYes	Acinetobacter baumannii ATCC 19606
NoYes	Acinetobacter baumannii AB307-0294
NoYes	Acinetobacter baumannii AYE
NoYes	Acinetobacter baumannii MDR-ZJ06
NoYes	Acinetobacter baumannii AB0057
NoYes	Acinetobacter baumannii ACICU
NoYes	Acinetobacter junii SH205
NoYes	Ricinus communis - Castor bean
NoYes	Vibrio campbellii ATCC BAA-1116
NoYes	1_050719N (meta-genome)
NoYes	1_Upper_euphotic (meta-genome)
NoYes	2_050719S (meta-genome)
NoYes	4_050719Q (meta-genome)
NoYes	5_050719P (meta-genome)
NoYes	Air microbial communities Singapore indoor air filters 2 (meta-genome)
NoYes	Atta cephalotes fungus garden (ACEF) (meta-genome)
NoYes	Combined (meta-genome)
NoYes	Cyphomyrmex longiscapus fungus garden (meta-genome)
NoYes	Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)
NoYes	Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)
NoYes	Dump bottom (Dump bottom) (meta-genome)
NoYes	Dump top (Dump top) (meta-genome)
NoYes	Endophytic microbiome from Rice (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)
NoYes	Fungus garden combined (combined) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)
NoYes	Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)
NoYes	Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)
NoYes	NCBI 2017_08 genome
NoYes	Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)
NoYes	simHC - Simulated High Complexity Metagenome (meta-genome)
NoYes	simLC - Simulated Low Complexity Metagenome (meta-genome)
NoYes	simMC - Simulated Medium Complexity Metagenome (meta-genome)
NoYes	STRING v9.0.5 (STRING)
NoYes	Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)
NoYes	Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes	Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)
NoYes	Uniprot 2018_03 genome
NoYes	Global Ocean Sampling Expedition (GOS)
NoYes	NCBI plasmid sequences (Plasmids)
NoYes	PDB chains (SCOP 1.75) (PDB)
NoYes	Protein Data Bank (all PDB sequenc)
NoYes	SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes	TargetDB (Targets)
NoYes	The Salmonella enterica Pan-genome (meta-genome)
NoYes	ALL (only advised for small superfamilies)

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Periplasmic chaperone C-domain alignments