SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Sema domain alignments in Homo sapiens 69_37

These alignments are sequences aligned to the 0049402 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                      10           20             30              40
                                                       |            |              |               |
d1shyb1            ...........................KYQLPNFTAET...PIQNVILHE.....HHIFLGATNYIYVLNEE.....DL.Q
ENSP00000265362  ..nvprlklsykemlesnnvitfngla--------NSS...SYHTFLLDEer...SRLYVGAKDHIFSFDLV.....NI.K
ENSP00000284136  ..niprlkltykdlllsnscipflgss----------Egl.DFQTLLLDEer...GRLLLGAKDHIFLLSLV.....DL.N
ENSP00000466308  ....prlrlsfqelqawhglqtfsler----------Tc..CYQALLVDEer...GRLFVGAENHVASLNLD.....NI.S
ENSP00000411193  .rvyltfdelretktseyfslshhpld-----------...-YRILLMDEdq...DRIYVGSKDHILSLNIN.....NI.S
ENSP00000303212  hprlrlshkellnlnrtsifhspfgfl-----------...DLHTMLLDEyq...ERLFVGGRDLVYSLSLE.....RI.S
ENSP00000398399  ....tprvrlsfkelkatgtahffnfl-------LNTT...DYRILLKDEdh...DRMYVGSKDYVLSLDLH.....DI.N
ENSP00000388768  ............pipritwehrevhlv-----QFHEPDiy.NYSALLLSEdk...DTLYIGAREAVFAVNAL.....NI.S
ENSP00000306844  .......vssgelatvvrrfsqtgiqd-----------...-FLTLTLTEpt...GLLYVGAREALFAFSME.....AL.E
ENSP00000332204  .............islplgseerpflr------FEAEHis.NYTALLLSRdg...RTLYVGAREALFALS-S.....NL.S
ENSP00000231721  .vprlrlsyrdllsanrsaiflgpqgs----------L...NLQAMYLDEyr...DRLFLGGLDALYSLRLD.....QAwP
ENSP00000398776  ...........................KYQLPNFTAET...PIQNVILHE.....HHIFLGATNYIYVLNEE.....DL.Q
ENSP00000374083  ...................gnesqhrl-----------...DFQLMLKIR.....DTLYIAGRDQVYTVN--.....-L.N
ENSP00000282394  ......................rhrld-----------...-IQMIMIMN.....GTLYIAARDHIYTVD-I.....DT.S
ENSP00000342675  .......rtslpiseadscltrfavph----------Ty..NYSVLLVDPas...HTLYVGARDTIFALS-L.....PF.S
ENSP00000301293  .rdylnhypvfvgsgpgrltpaegadd----------L...NIQRVLRVN.....RTLFIGDRDNLYRVELEpptstEL.R
ENSP00000357266  .......................rals-----FFHQKGlq.DFDTLLLSGdg...NTLYVGAREAILALDIQ.....DP.G
ENSP00000359270  ........mtipyeelsgtrhfkgqaq-----------...NYSTLLLEEas...ARLLVGARGALFSLSAN.....DI.G
ENSP00000417570  .......................lqpw---VSNFTYPGar.DFSQLALDPsg...NQLIVGARNYLFRLSLA.....NV.S
ENSP00000371936  ....................ykeigpw---LREFRAKNav.DFSQLTFDPgq...KELVVGARNYLFRLQLE.....DL.S
ENSP00000357908  ..dlqgtsplswfrgleddavaaelgl-----------...DFQRFLTLN.....RTLLVAARDHVFSFD--.....-L.Q
ENSP00000251772  .........................tf------SASDW...GLTHLVVHEqt...GEVYVGAVNRIYKLS-G.....NL.T
ENSP00000323194  .....................vtfrge----------Pae.GFNHLVVDErt...GHIYLGAVNRIYKLS-S.....DL.K
ENSP00000356000  .........................st------FHSENrdwTFNHLTVHQgt...GAVYVGAINRVYKLT-G.....NL.T
ENSP00000358696  .........................fv-------VTDT...TLTHLAVHRvt...GEVFVGAVNRVFKLA-P.....NL.T
ENSP00000352288  .........................kl----DFFRSEK...ELNHLAVDEas...GVVYLGAVNALYQLD-A.....KL.Q
ENSP00000296440  .........................ft-------PNGT...YLQHLARDPts...GTLYLGATNFLFQLS-P.....GL.Q
ENSP00000296474  ...........................KYVVPSFSAGG...LVQAMVTYEgdrneSAVFVAIRNRLHVLG-P.....DL.K
ENSP00000261918  ..............drvdfgqtephtv-----------...-----LFHEpgs..SSVWVGGRGKVYLFD--.....--.-
ENSP00000317128  ..........................q----RRFPSPT...PTNNFALDGaa...GTVYLAAVNRLYQLSGA.....NL.S
ENSP00000445569  ..........................r-----FSAPNT...TLNHLALAPgr...GTLYVGAVNRLFQLS-P.....EL.Q
ENSP00000258526  ..........................p-----VWRSEQ...AIGAIAASQe....DGVFVASGSCLDQLDYSleh..SL.S


                            50          60          70          80             90        100       1
                             |           |           |           |              |          |        
d1shyb1            KVAEYKTG.PV..LEHPDCFPCQD.CSSKANL.SG.G.VWKDNINMALVVDTYYD.....DQLISCGS.VNRGTCQRHVFP
ENSP00000265362  DFQKIVW-.PV..SYTR----RDE.CKWAGKD.I-.L.KECANFIKVLKAYN--Q.....THLYACGTgAFHPICTYIEIG
ENSP00000284136  KNFKKIYW.PA..AKERVELC---.-KLA-GK.DA.N.TECANFIRVLQPYN--K.....THIYVCGTgAFHPICGYIDLG
ENSP00000466308  KRAKKLAW.PApvEWREEC-----.-NWAGKD.I-.G.TECMNFVKLLHAYN--R.....THLLACGTgAFHPTCAFVEVG
ENSP00000411193  QEALSVFW.PA..-----STIKVE.ECKMAGK.DP.T.HGCGNFVRVIQTFN--R.....THLYVCGSgAFSPVCTYLNRG
ENSP00000303212  DGYKEIHW.--..----PSTALKM.EECIMKG.KD.A.GECANYVRVLHHYN--R.....THLLTCGTgAFDPVCAFIRVG
ENSP00000398399  ------RE.PL..IIHWAASPQRI.EECVLSG.KDvN.GECGNFVRLIQPWN--R.....THLYVCGTgAYNPMCTYVNRG
ENSP00000388768  EKQHEVYW.KV..SEDKKAK----.--CAEKGkSK.Q.TECLNYIRVLQPLS--A.....TSLYVCGTnAFQPACDHLNLT
ENSP00000306844  LQGAISWEaPV..EKKTECIQK--.--G---K.NN.Q.TECFNFIRFLQPYN--A.....SHLYVCGTyAFQPKCTYVNML
ENSP00000332204  FLPGGEYQ.EL..LWGADAEKKQQ.CSFKGKD.-P.Q.RDCQNYIKILLPLS--G.....SHLFTCGTaAFSPMCTYINME
ENSP00000231721  DPREVLWP.PQ..PGQR-------.EECVRKG.RD.PlTECANFVRVLQPHN--R.....THLLACGTgAFQPTCALITVG
ENSP00000398776  KVAEYKTG.PV..LEHPDCFPCQD.CSSKANL.SG.G.VWKDNINMALVVDTYYD.....DQLISCGS.VNRGTCQRHVFP
ENSP00000374083  EMPKTEVI.PN..KKLTWRSRQQDrENCAMKG.KH.K.DECHNFIKVFVPRN--D.....EMVFVCGTnAFNPMCRYYRLS
ENSP00000282394  HTEEIYCS.KK..LTWKSRQADVD.-TCRMKG.KH.K.DECHNFIKVLLKKN--D.....DALFVCGTnAFNPSCRNYKMD
ENSP00000342675  GERPRRID.WM..VPEAH-----R.QNCRKKG.KK.E.DECHNFVQILAIAN--A.....SHLLTCGTfAFDPKCGVIDVS
ENSP00000301293  YQRKLTWR.SN..PSDIN------.-VCRMKG.KQ.E.GECRNFVKVLLLRD--E.....STLFVCGSnAFNPVCANYSID
ENSP00000357266  VPRLKNMI.PW..PASDRKKSEC-.--AFKKK.SN.E.TQCFNFIRVLVSYN--V.....THLYTCGTfAFSPACTFIELQ
ENSP00000359270  DGAHKEIH.--..---WEASPEMQ.SKCHQKGkNN.Q.TECFNHVRFLQRLN--S.....THLYACGThAFQPLCAAIDAE
ENSP00000417570  LLQATEWA.SS..EDTRR------.-SCQSKG.KT.E.EECQNYVRVLIVAG---.....RKVFMCGTnAFSPMCTSRQVG
ENSP00000371936  LIQAVEW-.--..----ECDEATK.KACYSKG.KS.K.EECQNYIRVLLVGG---.....DRLFTCGTnAFTPVCTNRSLS
ENSP00000357908  AEEEGEGL.VP..NKYLTWRSQDV.ENCAVRG.KL.T.DECYNYIRVLVPWD--S.....QTLLACGTnSFSPVCRSYGIT
ENSP00000251772  LLRAHVTG.PV..EDNEKCYPPPS.VQSCPHG.L-.-.GSTDNVNKLLLLDY-AA.....NRLLACGS.ASQGICQFLRLD
ENSP00000323194  VLVTHETG.PD..EDNPKCYPPRI.VQTCNEP.L-.-.TTTNNVNKMLLIDY-KE.....NRLIACGS.LYQGICKLLRLE
ENSP00000356000  IQVAHKTG.PE..EDNKSCYPPLI.VQPCSEV.L-.-.TLTNNVNKLLIIDY-SE.....NRLLACGS.LYQGVCKLLRLD
ENSP00000358696  ELRAHVTG.PV..EDNARCYPPPS.MRVCAHR.L-.-.APVDNINKLLLIDY-AA.....RRLVACGS.IWQGICQFLRLD
ENSP00000352288  LEQQVATG.PA..LDNKKCTPPIE.ASQCHEA.--.-.EMTDNVNQLLLLDP-PR.....KRLVECGS.LFKGICALRALS
ENSP00000296440  LEATVSTG.PV..LDSRDCLPPVM.PDECPQA.--.-.QPTNNPNQLLLVSP---.....GALVVCGS.VHQGVCEQRRLG
ENSP00000296474  SVQSLATG.PA..-GDPGCQTCAA.CGPGPHG.--.-.PPGDTDTKVLVLDP-AL.....PALVSCGS.SLQGRCFLHDLE
ENSP00000261918  -------F.PE..GKNASVRTVNI.GSTKGSC.LD.K.RDCENYITLLERRS---.....EGLLACGTnARHPSCWNLVNG
ENSP00000317128  LEAEAAVG.PV..PDSPLCHAPQL.-PQASCE.HP.R.RLTDNYNKILQLDP-GQ.....GLVVVCGS.IYQGFCQLRRRG
ENSP00000445569  LEAVAVTG.PV..IDSPDCVPFRD.PAECPQA.--.-.QLTDNANQLLLVSS-RA.....QELVACGQ.VRQGVCETRRLG
ENSP00000258526  RLYRDQAG.--..----NCTEPVS.LAPPARP.--.-.RPGSSFSKLLLPYR-EGaaglgGLLLTGWT.FDRGACEVRPLG


                   10                                                      120       130        140 
                    |                                                        |         |          | 
d1shyb1            HNHTA........................................DIQSEV.......HCIFSPQIEEPSQCPD.CVVSAL
ENSP00000265362  HHPEDnifklensh...............................FENGRG.......KSPYDPKLLTASLLID.------
ENSP00000284136  VYKEDiifkldthn...............................LESGRL.......KCPFDPQQPFASVMTD.------
ENSP00000466308  HRAEEpvlrldpgr...............................IEDGKG.......KSPYDPRHRAASVLVG.------
ENSP00000411193  RRSEDqvfmidsk................................CESGKG.......RCSFNPNVNTVSVMIN.------
ENSP00000303212  YHLEDplfhlespr...............................SERGRG.......RCPFDPSSSFISTLIG.------
ENSP00000398399  RRAQAtpwtqtqavrgrgsratdgalrpmptaprqdyifyleperLESGKG.......KCPYDPKLDTASALIN.------
ENSP00000388768  SFKFLgk......................................NEDGKG.......RCPFDPAHSYTSVMVD.------
ENSP00000306844  TFTLEhge.....................................FEDGKG.......KCPYDPAKGHAGLLVD.------
ENSP00000332204  NFTLArdekgnvl................................LEDGKG.......RCPFDPNFKSTALVVD.------
ENSP00000231721  HRGEHvlhlepgs................................VESGRG.......RCPHEPSRPFASTFID.------
ENSP00000398776  HNHTA........................................DIQSEV.......HCIFSPQIEEPSQCPD.CVVSAL
ENSP00000374083  TLEYD........................................GEEISGla.....RCPFDARQTNVALFAD.------
ENSP00000282394  TLEPF........................................GDEFSGma.....RCPYDAKHANVALFAD.------
ENSP00000342675  RFQQVer......................................LESGRG.......KCPFEPAQRSAAVMAG.------
ENSP00000301293  TLQPV........................................GDNISGma.....RCPYDPKHANVALFSD.------
ENSP00000357266  DSYLLpisedk..................................VMEGKG.......QSPFDPAHKHTAVLVD.------
ENSP00000359270  AFTLP........................................TSFEEGke.....KCPYDPARGFTGLIID.------
ENSP00000417570  NLSRT........................................IEKINGva.....RCPYDPRHNSTAVISS.------
ENSP00000371936  NLTEI........................................HDQISGma.....RCPYSPQHNSTALLTA.------
ENSP00000357908  SLQQE........................................GEELSGqa.....RCPFDATQSNVAIFAE.------
ENSP00000251772  DLFKL........................................GEPHHR.......KEHYLSSVQ-------.EAGSMA
ENSP00000323194  DLFKL........................................GEPYHK.......KEHYLSGVN-------.ESGSVF
ENSP00000356000  DLFIL........................................VEPSHK.......KEHYLSSVN-------.KTGTMY
ENSP00000358696  DLFKL........................................GEPHHR.......KEHYLSGAQ-------.EPDSMA
ENSP00000352288  NISLR........................................LFYED-.......----GSGEKSFVASND.EGVATV
ENSP00000296440  QLEQL........................................LLRPE-.......----RPGDTQYVAAND.PAVSTV
ENSP00000296474  PQGTA........................................VHLAAP.......ACLFSAHHNRPDDCPD.CVASPL
ENSP00000261918  TVVPL........................................G-EMRG.......YAPFSPDENSLVLFEGdEVYSTI
ENSP00000317128  NISAV........................................AVRFPPaappaepVTVFPSMLN--VAANH.PNASTV
ENSP00000445569  DVAEV........................................LYQAE-.......----DPGDGQFVAANT.PGVATV
ENSP00000258526  NLSRN........................................SLRNG-.......---------TEVVSCH.PQGSTA


                         150       160       170                   180          190             200 
                           |         |         |                     |            |               | 
d1shyb1            GAKVLSSVKDRFINFFVGNTINSSYFPDHPL............HSISVRRLKETK...DGFMFL......TDQSYIDVLP.
ENSP00000265362  ------------GELYSGTAADFMGRDFAIF............RTLGHHHPIRTE...------......--------QH.
ENSP00000284136  ------------EYLYSGTASDFLGKDTAFT............-----RSLGPTH...DHHY--......----IRTDIS.
ENSP00000466308  ------------EELYSGVAADLMGRDFTIF............RSLGQRPSLRTE...------......--------PH.
ENSP00000411193  ------------EELFSGMYIDFMGTDAAIF............RSLTKRNAVRTD...------......--------QH.
ENSP00000303212  ------------SELFAGLYSDYWSRDAAIF............RSMGRLAHIRTE...------......--------HD.
ENSP00000398399  ------------EELYAGVYIDFMGTDAAIF............RTLGKQTAMRTD...------......--------QY.
ENSP00000388768  ------------GELYSGTSYNFLGSEPIIS............R-NSSHSPLRTE...YAIPWL......NEPSFVFADVi
ENSP00000306844  ------------GELYSATLNNFLGTEPIIL............RNMGPHHSMKTE...YLAFWL......NEPHFVGSAYv
ENSP00000332204  ------------GELYTGTVSSFQGNDPAIS............RSQSLRPTKTE-...SSLNWL......QDPAFVASAYi
ENSP00000231721  ------------GELYTGLTADFLGREAMIF............RSGGPRPALRSD...SDQSLL......H---------.
ENSP00000398776  GAKVLSSVKDRFINFFVGNTINSSYFPDHPL............HSISVRRLKETK...DGFMFL......TDQSYIDVLP.
ENSP00000374083  ------------GKLYSATVADFLASDAVIY............RSMGDGSALRT-...------......-------IKY.
ENSP00000282394  ------------GKLYSATVTDFLAIDAVIY............RSLGESPTLRT-...------......-------VKH.
ENSP00000342675  ------------GVLYAATVKNYLGTEPIIT............RAVGRAEDWIRT...DTLP--......----------.
ENSP00000301293  ------------GMLFTATVTDFLAIDAVIY............RSLGDRPTLRT-...------......-------VKH.
ENSP00000357266  ------------GMLYSGTMNNFLGSEPILM............RTLGSQPVLKTD...NFLR--......----------.
ENSP00000359270  ------------GGLYTATRYEFRSIPDI-R............RSRHPHSLRTEE...TPMHWL......NDAEFVFSVLv
ENSP00000417570  -----------QGELYAATVIDFSGRDPAIY............RSLGSGPPLRTA...------......--------QY.
ENSP00000371936  -----------GGELYAATAMDFPGRDPAIY............RSLGILPPLRTA...------......--------QY.
ENSP00000357908  ------------GSLYSATAADFQASDAVVY............RSLGPQPPLRSA...------......--------KY.
ENSP00000251772  GVLIAGPPGQGQAKLFVGTPIDGKSEY---F............PTLSSRRLMANEedaDMFGFV......YQDEFVSSQLk
ENSP00000323194  GVIVSYSNLD--DKLFIATAVDGKPEY---F............PTISSRKLTKNSeadGMFAYV......FHDEFVASMIk
ENSP00000356000  GVIVRS--EGEDGKLFIGTAVDGKQDY---F............PTLSSRKLPRDP...ESSAMLdye...LHSDFVSSLIk
ENSP00000358696  GVIVEQ--GQGPSKLFVGTAVDGKSEY---F............PTLSSRKLISDEdsaDMFSLV......YQDEFVSSQIk
ENSP00000352288  GLVSST-GPGGDRVLFVGKGNGPHDNGII--............--VSTRLLDRTD...SREAFE......AYTDHATYKA.
ENSP00000296440  GLVAQG--LAGEPLLFVGRGYTSRGVGGGIP............P-ITTRALWPP-...DPQAAF......SYEETAKLAV.
ENSP00000296474  GTRVTVVEQGQASYFYVASSLDAAVAASFSP............RSVSIRRLKADA...SGFA--......PGFVALSVLP.
ENSP00000261918  RKQEYN-------------------------............------------...GKIPRF......RRIRGESELYt
ENSP00000317128  GLVLPPAAGAGGSRLLVGATYTGYGSSFFPRnrsledhrfentPEIAIRSLDTRG...DLAKLFtfdlnpSDDNILKIKQ.
ENSP00000445569  GLVVPL---PGRDLLLVARGLAGKLSAGVPP............--LAIRQLAGSQ...----PF......SSEGLGRLVV.
ENSP00000258526  GVVYRA---GRNNRWYLAVAATYVLPEPETAsrcnpaas....DHDTAIALKDTE...GRSLAT......QELGRLKLCE.


                                210                 220       230                240                
                                  |                   |         |                  |                
d1shyb1            ......EFRDSYPIKYVHAF..........ESNNFIYFLTVQRETL.........DAQTFHTRIIRFCSINSG........
ENSP00000265362  ......DSRWLNDPKFISAHlisesdn...PEDDKVYFFFRENAIDgeh......SGKATHARIGQICKNDFGghrslvnk
ENSP00000284136  ......EHYWLNGAKFIGTFfipdtyn...PDDDKIYFFFRESSQEgst......SDKTILSRVGRVCKNDVGgqrslink
ENSP00000466308  ......DSRWLNEPKFVKVFwipesen...PDDDKIYFFFRETAVEaapa.....LGRLSVSRVGQICRNDVGgqrslvnk
ENSP00000411193  ......NSKWLSEPMFVDAHvipdgtd...PNDAKVYFFFKEKLTDnnr......STKQIHSMIARICPNDTGglrslvnk
ENSP00000303212  ......DERLLKEPKFVGSYmipdned...RDDNKVYFFFTEKALEaen......NAHAIYTRVGRLCVNDVGgqrilvnk
ENSP00000398399  ......NSRWLNDPSFIHAElipdsae...RNDDKLYFFFRERSAEap.......QSPAVYARIGRICLNDDGghcclvnk
ENSP00000388768  .....rKSPDSP-------D..........GEDDRVYFFFTEVSVEyef......VFRVLIPRIARVCKGDQGglrtlqkk
ENSP00000306844  .....pESVGSF-------T..........GDDDKVYFFFRERAVEsdc......YAEQVVARVARVCKGDMGgartlqrk
ENSP00000332204  .....pESLGSL-------Q..........GDDDKIYFFFSETGQEfef......FENTIVSRIARICKGDEGgervlqqr
ENSP00000231721  ......------DPRFVMAAripensd...QDNDKVYFFFSETVPSpdgg.....SNHVTVSRVGRVCVNDAGgqrvlvnk
ENSP00000398776  ......EFRDSYPIKYVHAF..........ESNNFIYFLTVQRETL.........DAQTFHTRIIRFCSINSG........
ENSP00000374083  ......DSKWIKEPHFLHAI..........EYGNYVYFFFREIAVEhnn......LGKAVYSRVARICKNDMGgsqrvlek
ENSP00000282394  ......DSKWLKEPYFVQAV..........DYGDYIYFFFREIAVEynt......MGKVVFPRVAQVCKNDMGgsqrvlek
ENSP00000342675  ......--SWLNAPAFVAAValspaewgdeDGDDEIYFFFTETSRAfds......YERIKVPRVARVCAGDLGgrktlqqr
ENSP00000301293  ......DSKWFKEPYFVHAV..........EWGSHVYFFFREIAMEfny......LEKVVVSRVARVCKNDVGgsprvlek
ENSP00000357266  ......--WLHHDASFVAAI..........PSTQVVYFFFEETASEfdf......FERLHTSRVARVCKNDVGgekllqkk
ENSP00000359270  .....rESKA-------SAV..........GDDDKVYYFFTERATEegsgsftqsRSSHRVARVARVCKGDLGgkkilqkk
ENSP00000417570  ......NSKWLNEPNFVAAY..........DIGLFAYFFLRENAVEhd.......CGRTVYSRVARVCKNDVGgrflledt
ENSP00000371936  ......NSKWLNEPNFVSSY..........DIGNFTYFFFRENAVEhd.......CGKTVFSRAARVCKNDIGgrflledt
ENSP00000357908  ......DSKWLREPHFVQAL..........EHGDHVYFFFREVSVEdar......LGRVQFSRVARVCKRDMGgspraldr
ENSP00000251772  ipsdtlSKFPAFDIYYVYSF..........RSEQFVYYLTLQLDTQltspdaa..GEHFFTSKIVRLCVDDPK........
ENSP00000323194  ipsdtfTIIPDFDIYYVYGF..........SSGNFVYFLTLQPEMVsppgstt..KEQVYTSKLVRLCKEDTA........
ENSP00000356000  ipsdtlALVSHFDIFYIYGF..........ASGGFVYFLTVQPETPegvainsa.GDLFYTSRIVRLCKDDPK........
ENSP00000358696  ipsdtlSLYPAFDIYYIYGF..........VSASFVYFLTLQLDTQqtlldta..GEKFFTSKIVRMCAGDSE........
ENSP00000352288  ......GYLSTNTQQFVAAF..........EDGPYVFFVFNQQDK-.........HPARNRTLLARMCREDPN........
ENSP00000296440  ......GRLSEYSHHFVSAF..........ARGASAYFLFLRRDLQa........QSRAFRAYVSRVCLRDQH........
ENSP00000296474  ......KHLVSYSIEYVHSF..........HTGAFVYFLTVQPASVtd.......DPSALHTRLARLSATEPE........
ENSP00000261918  ......SDTVMQNPQFIKATivhqdq....AYDDKIYYFFREDNPDknp......EAPLNVSRVAQLCRGDQGgesslsvs
ENSP00000317128  ......GAKEQHKLGFVSAFlhpsdppp..GAQSYAYLALNSEARAgd.......KESQARSLLARICLPHGAggdakkl.
ENSP00000445569  ......GDFSDYNNSYVGAF..........ADARSAYFVFRRRGAR.........AQAEYRSYVARVCLGDTN........
ENSP00000258526  ......---GAGSLHFVDAF..........LWNGSIYFPYYPYNYTsgaa.....TGWPSMARIAQ----STE........


                   250       260         270       280       290       300               310       3
                     |         |           |         |         |         |                 |        
d1shyb1            .LHSYMEMPLECILTELVPRGS..TKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFA........QSKPDSAEPM
ENSP00000265362  .WTTFLKARLICSVPGPNGI--..--DTHFDELQDVFLMN---------FKDPKNPVVYGVFT........TS----SNIF
ENSP00000284136  .WTTFLKARLICSIPGSDGA--..--DTYFDELQDIYLLP---------TRDERNPVVYGVFT........TT----SSIF
ENSP00000466308  .WTTFLKARLVCSVPGVEGDTH..FDQLRPFPAEDVFLLS---------SRDHRTPLLYAVFS........TS----SSIF
ENSP00000411193  .WTTFLKARLVCSVTDEDGP--..--ETHFDELEDVFLLE---------TDNPRTTLVYGIFT........TS----SSVF
ENSP00000303212  .WSTFLKARLVCSVPGMNGI--..--DTYFDELEDVFLLP---------TRDHKNPVIFGLFN........TT----SNIF
ENSP00000398399  .WSTFLKARLVCSVPGEDGI--..--ETHFDELQDVFVQQ---------TQDVRNPVIYAVFT........SS----GSVF
ENSP00000388768  .WTSFLKARLICSRPDS-----..--GLVFNVLRDVFVLR---------SPGLKVPVFYALFT........PQ----LNNV
ENSP00000306844  .WTTFLKARLACSAPNW-----..--QLYFNQLQAMHTLQ---------DTSWHNTTFFGVFQ........AQ----WGDM
ENSP00000332204  .WTSFLKAQLLCSRPDD-----..--GFPFNVLQDVFTLSPSPQ-------DWRDTLFYGVFT........SQWHR--GTT
ENSP00000231721  .WSTFLKARLVCSVPGPGGA--..--ETHFDQLEDVFLLWPKAG---------KSLEVYALFS........TV----SAVF
ENSP00000398776  .LHSYMEMPLECILTEKRKKRS..TKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFA........QSKPDSAEPM
ENSP00000374083  hWTSFLKARLNCSVPGDS----..--FFYFDVLQSITDII---------QINGIPTV-VGVFT........TQ----LNSI
ENSP00000282394  qWTSFLKARLNCSVPGDS----..--HFYFNILQAVTDVI---------RINGR-DVVLATFS........TP----YNSI
ENSP00000342675  .WTTFLKADLLCPGPEH-----..--GRASSVLQDVAVLRPEL--------GAGTPIFYGIFS........SQ----WEGA
ENSP00000301293  qWTSFLKARLNCSVPGDS----..--HFYFNVLQAVTGVV---------SL-GGRPVVLAVFS........TP----SNSI
ENSP00000357266  .WTTFLKAQLLCTQPG------..--QLPFNVIRHAVLLPAD---------SPTAPHIYAVFT........SQWQV--GGT
ENSP00000359270  .WTSFLKARLICHIP-------..----LYETLRGVCSLD---------AETSSRTHFYAAFT........LSTQW--KTL
ENSP00000417570  .WTTFMKARLNCSRPGEV----..--PFYYNELQSAFHLP-------------EQDLIYGVFT........TN----VNSI
ENSP00000371936  .WTTFMKARLNCSRPGEV----..--PFYYNELQSTFFLP-------------ELDLIYGIFT........TN----VNSI
ENSP00000357908  hWTSFLKLRLNCSVPGDS----..--TFYFDVLQALTGPV---------N-LHGRSALFGVFT........TQ----TNSI
ENSP00000251772  .FYSYVEFPIGCEQA-------..--GVEYRLVQDAYLSRPGRALAHQLGLAEDEDVLFTVFA........QGQKNRVKPP
ENSP00000323194  .FNSYVEVPIGCERS-------..--GVEYRLLQAAYLSKAGAVLGRTLGVHPDDDLLFTVFS........KGQKRKMKSL
ENSP00000356000  .FHSYVSLPFGCTRA-------..--GVEYRLLQAAYLAKPGDSLAQAFNITSQDDVLFAIFS........KGQKQYHHPP
ENSP00000358696  .FYSYVEFPIGCSWR-------..--GVEYRLVQSAHLAKPGLLLAQALGVPADEDVLFTIFS........QGQKNRASPP
ENSP00000352288  .YYSYLEMDLQCRDPDIH----..--AAAFGTCLAASVAAPGSG-----------RVLYAVFS........RDSRS--SGG
ENSP00000296440  .YYSYVELPLACEGGR------..-----YGLIQAAAVATSRE-V-------AHGEVLFAAFSsaapptvgRPPSAAAGAS
ENSP00000296474  .LGDYRELVLDCRFAPKRRRRGapEGGQPYPVLRVAHSAPVGAQLATELSIAEGQEVLFGVFV........TGKDGGPGVG
ENSP00000261918  kWNTFLKAMLVCSDAAT-----..--NKNFNRLQDVFLLPDP-------SGQWRDTRVYGVFS........-------NPW
ENSP00000317128  .TESYIQLGLQCAGGAGR----..--GDLYSRLVSVFPAR---------------ERLFAVFE........RPQGSPAARA
ENSP00000445569  .LYSYVEVPLACQGQ-------..------GLIQAAFLAP---------------GTLLGVFA........AG-----PRG
ENSP00000258526  .VLFQGQASLDCGHGHPDGRR-..--------------LLLSSSLVEAL------DVWAGVFSaa......AGEGQERRSP


                   20       330       340                 350       360                    370      
                    |         |         |                   |         |                      |      
d1shyb1            DRSAMCAFPIKYVNDFFNKIVNKNNVRCLQH..........FYGPNHEHCFNRTL.........L....RNSSGCEARRDE
ENSP00000265362  KGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWvpyqgr....VPYPRPGTCPSKTFggfds....T....KDLPDDVITFAR
ENSP00000284136  KGSAVCVYSMADIRAVFNGPYAHKESADHRWvqydgr....IPYPRPGTCPSKTYdpliks...T....RDFPDDVISFIK
ENSP00000466308  QGSAVCVYSMNDVRRAFLGPFAHKEGPMHQWvsyqgr....VPYPRPGMCPSKTFgtfss....T....KDFPDDVIQFAR
ENSP00000411193  KGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLisyqgr....IPYPRPGTCPGGAFtpnmrt...T....KEFPDDVVTFIR
ENSP00000303212  RGHAICVYHMSSIRAAFNGPYAHKEGPEYHWsvyegk....VPYPRPGSCASKVNggrygt...T....KDYPDDAIRFAR
ENSP00000398399  RGSAVCVYSMADIRMVFNGPFAHKEGPNYQWmpfsgk....MPYPRPGTCPGGTFtpsmks...T....KDYPDEVINFMR
ENSP00000388768  GLSAVCAYNLSTAEEVFSHGKYMQSTTVEQShtkwvryngpVPKPRPGACIDSEAraanyts..S....LNLPDKTLQFVK
ENSP00000306844  YLSAICEYQLEEIQRVFEGPYKEYHEEAQKWdrytdp....VPSPRPGSCINNWHrrhgyts..S....LELPDNILNFVK
ENSP00000332204  EGSAVCVFTMKDVQRVFSGLYKEVNRETQQWytvthp....VPTPRPGACITNSArerkins..S....LQLPDRVLNFLK
ENSP00000231721  QGFAVCVYHMADIWEVFNGPFAHRDGPQHQWgpyggk....VPFPRPGVCPSKMTaqpgrpfgsT....KDYPDEVLQFAR
ENSP00000398776  DRSAMCAFPIKYVNDFFNKIVNKNNVRCLQH..........FYGPNHEHCFNRTL.........L....RNSSGCEARRDE
ENSP00000374083  PGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWtavpedk...VPKPRPGCCAKHGLaeaykt...S....IDFPDETLSFIK
ENSP00000282394  PGSAVCAYDMLDIASVFTGRFKEQKSPDSTWtpvpder...VPKPRPGCCAGSSSleryat...S....NEFPDDTLNFIK
ENSP00000342675  TISAVCAFRPQDIRTVLNGPFRELKHDCNRGlpvvdnd...VPQPRPGECITNNMklrhfgs..S....LSLPDRVLTFIR
ENSP00000301293  PGSAVCAFDLTQVAAVFEGRFREQKSPESIWtpvpedq...VPRPRPGCCAAPGMqyna.....S....SALPDDILNFVK
ENSP00000357266  RSSAVCAFSLLDIERVFKGKYKELNKETSRWt.........TYRGPETNPRPGSCs........V....GPSSDKALTFMK
ENSP00000359270  EASAICRYDLAEIQAVFAGPYMEYQDGSRRWgryegg....VPEPRPGSCITDSLrsqgyns..S....QDLPSLVLDFVK
ENSP00000417570  AASAVCAFNLSAISQAFNGPFRYQENPRAAWlp........IANPIPNFQCGTLPetgp.....N....ENLTERSLQDAQ
ENSP00000371936  AASAVCVFNLSAIAQAFSGPFKYQENSRSAWlp........YPNPNPHFQCGTVDqgl......Y....VNLTERNLQDAQ
ENSP00000357908  PGSAVCAFYLDEIERGFEGKFKEQRSLDGAWtpvsedr...VPSPRPGSCAGVGGaalfss...S....RDLPDDVLTFIK
ENSP00000251772  KESALCLFTLRAIKEKIKERIQSCYRGEGKLslp.......WLLNKELGCINSPL.........Q....IDDDFCGQD-FN
ENSP00000323194  DESALCIFILKQINDRIKERLQSCYRGEGTLdla.......WLKVKDIPCSSALL.........T....IDDNFCGLD-MN
ENSP00000356000  DDSALCAFPIRAINLQIKERLQSCYQGEGNLeln.......WLLGKDVQCTKAPV.........P....IDDNFCGLD-IN
ENSP00000358696  RQTILCLFTLSNINAHIRRRIQSCYRGEGTLalp.......WLLNKELPCINTPM.........Q....INGNFCGLV-LN
ENSP00000352288  PGAGLCLFPLDKVHAKMEANRNACYTGTREArdi.......FYKPFHGDIQCGGHapg......S....SKSFPCGSEHLP
ENSP00000296440  GASALCAFPLDEVDRLANRTRDACYTREGRAedgtevayi.EYDVNSDCAQLPVD.........T....LDAYPCGSDHTP
ENSP00000296474  PNSVVCAFPIDLLDTLIDEGVERCCESPVHPg.........LRRGLDFFQSPSFC.........PnppgLEALSPNTSCRH
ENSP00000261918  NYSAVCVYSLGDIDKVFRTSSLKGYHSS---..........LPNPRPGKCLPDQQ.........P....IPTE--TFQVAD
ENSP00000317128  APAALCAFRFADVRAAIRAARTACFVEPAPDvvavlds...VVQGTGPACERKLNiql......Q....PEQLDCGAAHLQ
ENSP00000445569  TQAALCAFPMVELGASMEQARRLCYTAGGRGpsgaeeatv.EYGVTSRCVTLPLD.........S....PESYPCGDEHTP
ENSP00000258526  TTTALCLFRMSEIQARAKRVS----------..........--------------.........-....W----DFKTAES


                    380            390       400            410           420       430             
                      |              |         |              |             |         |             
d1shyb1            YRTEFTTALQRV.....DLFMGQFSEVLLTSISTFIK.....GD....LTIANLGTSEGRFMQVVVSRSG.......PSTP
ENSP00000265362  SHPAMYNPVFPMnnr..PIVIKTDVNYQFTQIVVDRVdaed.GQ....YDVMFIGTDVGTVLKVVSIPKEtwydleeVLLE
ENSP00000284136  RHSVMYKSVYPVagg..PTFKRINVDYRLTQIVVDHViaed.GQ....YDVMFLGTDIGTVLKVVSISKEkwnmee.VVLE
ENSP00000466308  NHPLMYNSVLPTggr..PLFLQVGANYTFTQIAADRVaaad.GH....YDVLFIGTDVGTVLKVISVPKGsrpsaegLLLE
ENSP00000411193  NHPLMYNSIYPIhkr..PLIVRIGTDYKYTKIAVDRVnaad.GR....YHVLFLGTDRGTVQKVVVLPTNnsvsge.LILE
ENSP00000303212  SHPLMYQAIKPAhkk..PILVKTDGKYNLKQIAVDRVeaed.GQ....YDVLFIGTDNGIVLKVITIYNQemesmeeVILE
ENSP00000398399  SHPLMYQAVYPLqrr..PLVVRTGAPYRLTTIAVDQVdaad.GR....YEVLFLGTDRGTVQKVIVLPKDdqelee.LMLE
ENSP00000388768  DHPLMDDSVTPIdnr..PRLIK--KDVNYTQIVVDRTqaldgTV....YDVMFVSTDRGALHKAISLEHAv......HIIE
ENSP00000306844  KHPLMEEQVGPRwsr..PLLVK--KGTNFTHLVADRVtgldgAT....YTVLFIGTGDGWLLKAVSLGPW.......VHLI
ENSP00000332204  DHFLMDGQVRSR.....MLLLQ--PQARYQRVAVHRVpglh.HT....YDVLFLGTGDGRLHKAVSVGPRv......HIIE
ENSP00000231721  AHPLMFWPVRPRhgr..PVLVKTHLAQQLHQIVVDRVeaed.GT....YDVIFLGTDSGSVLKVIALQAGgsaepeeVVLE
ENSP00000398776  YRTEFTTALQRV.....DLFMGQFSEVLLTSISTFIK.....GD....LTIANLGTSEGRFMQVVVSRSG.......PSTP
ENSP00000374083  SHPLMDSAVPPIade..PWFTKTRVRYRLTAISVDHSagpy.QN....YTVIFVGSEAGMVLKVLAKTSP.......FSLN
ENSP00000282394  THPLMDEAVPSIfnr..PWFLRTMVRYRLTKIAVDTAagpy.QN....HTVVFLGSEKGIILKFLARIGNs......GFLN
ENSP00000342675  DHPLMDRPVFPAdgh..PLLVT--TDTAYLRVVAHRVtslsgKE....YDVLYLGTEDGHLHRAVRIGAQl......SVLE
ENSP00000301293  THPLMDEAVPSLgha..PWILRTLMRHQLTRVAVDVGagpw.GN....QTVVFLGSEAGTVLKFLVRPNAst.....SGTS
ENSP00000357266  DHFLMDEQVVGT.....PLLVK--SGVEYTRLAVETAqgldgHS....HLVMYLGTTTGSLHKAVVSGDSsa.....HLVE
ENSP00000359270  LHPLMARPVVPTrgr..PLLLK--RNIRYTHLTGTPVttpagPT....YDLLFLGTADGWIHKAVVLGSGm......HIIE
ENSP00000417570  RLFLMSEAVQPVt....PEPCVTQDSVRFSHLVVDLVqakd.TL....YHVLYIGTESGTILKALSTASRslhg...CYLE
ENSP00000371936  KFILMHEVVQPVttv..PSFME--DNSRFSHVAVDVV.....QGrealVHIIYLATDYGTIKKVRVPLNQtsss...CLLE
ENSP00000357908  AHPLLDPAVPPVth...QPLLTLTSRALLTQVAVDGMagph.SN....ITVMFLGSNDGTVLKVLTPGGR.......SGGP
ENSP00000251772  QPLGGTVTIEGT.....PLFVD--KDDGLTAVAAYDY.....RG....RTVVFAGTRSGRIRKILVDLSNpggrp..ALAY
ENSP00000323194  APLGVSDMVRGI.....PVFTE--DRDRMTSVIAYVY.....KN....HSLAFVGTKSGKLKKIRVDGPRgn.....ALQY
ENSP00000356000  QPLGGSTPVEGL.....TLYTT--SRDRMTSVASYVY.....NG....YSVVFVGTKSGKLKKIRADGPPhgg....VQYE
ENSP00000358696  QPLGGLHVIEGL.....PLLAD--STDGMASVAAYTY.....RQ....HSVVFIGTRSGSLKKVRVDGFQd......AHLY
ENSP00000352288  YPLGSRDGLRGT.....AVLQR--GGLNLTAVTVAAE.....NN....HTVAFLGTSDGRILKVYLTPDGt......SSEY
ENSP00000296440  SPMASRVPLEAT.....PILEW--PGIQLTAVAVTME.....DG....HTIAFLGDSQGQLHRVYLGPGSd......GHPY
ENSP00000296474  FPLLVSSSFSRV.....DLFNGLLGPVQVTALYVTRL.....DN....VTVAHMGTMDGRILQVELVRSLn......YLLY
ENSP00000261918  RHPEVAQRVEPMgplktPLFH---SKYHYQKVAVHRMqashgET....FHVLYLTTDRGTIHKVVEPGEQehsfa..FNIM
ENSP00000317128  HPLSILQPLKAT.....PVF----RAPGLTSVAVASV.....NN....YTAVFLGTVNGRLLKINLNESMq......VVSR
ENSP00000445569  SPIAGRQPLEVQ.....PLLK---LGQPVSAVAALQA.....DG....HMIAFLGDTQGQLYKVFLHGSQ.......GQVY
ENSP00000258526  HCKEGDQPERVQ.....PIASSTLIHSDLTSVYGTVV.....MN....RTVLFLGTGDGQLLKVILGENLts.....NCPE


                    440                         450       460       470                
                      |                           |         |         |                
d1shyb1            HVNFLLD..................SHPVSPEVIVEHTLNQNGYTLVITGKKITKIPL..........
ENSP00000265362  EMTVFRE..................PTAISAMEL----STKQQQLYIGSTAGVAQLPLhrcdiy....
ENSP00000284136  ELQIFKH..................SSIILNMEL----SLKQQQLYIGSRDGLVQL--slhrcdty..
ENSP00000466308  ELHVFED..................SAAVTSMQI----SSKRHQLYVASRSAVAQI--alhrcaa...
ENSP00000411193  ELEVFKN..................HAPITTMKI----SSKKQQLYVSSNEGVSQVS-lhrchiy...
ENSP00000303212  ELQIFKD..................PVPIISMEI----SSKRQQLYIGSASAVAQV--rfhhcdmy..
ENSP00000398399  EVEVFKD..................PAPVKTMTI----SSKRQQLYVASAVGVT----hlslhrcqay
ENSP00000388768  ETQLFQD..................FEPVQTLLLSSKK--GNRFVYAGSNSGVVQAPL..........
ENSP00000306844  EELQLFD..................QEPMRSLVL----SQSKKLLFAGSRSQLVQLPVa.........
ENSP00000332204  ELQIFSS..................GQPVQNLLL----DTHRGLLYAASHSGVVQVP-m.........
ENSP00000231721  ELQVFKV..................PTPITEMEI----SVKRQMLYVGSRLGVAQL--rlhqcety..
ENSP00000398776  HVNFLLD..................SHPVSPEVIVEHTLNQNGYTLVITGKKITKIPL..........
ENSP00000374083  DSVLLEEieaynhakcsaenee...DKKVISLQL----DKDHHALYVAFSSCIIRIPLsrcery....
ENSP00000282394  DSLFLEEmsvynsekcsydgve...DKRIMGMQL----DRASSSLYVAFSTCVIKVPLgrcery....
ENSP00000342675  DLALFPE..................PQPVENMKLY------HSWLLVGSRTEVTQV--n.........
ENSP00000301293  GLSVFLEefetyrpdrcgrpgggetGQRLLSLEL----DAASGGLLAAFPRCVVRVPVarcqqy....
ENSP00000357266  EIQLFPD..................PEPVRNLQL----APTQGAVFVGFSGGVWRVP-rancsvy...
ENSP00000359270  ETQVFRE..................SQSVENLVI----SLLQHSLYVGAPSGVIQLPL..........
ENSP00000417570  ELHVLPPgr................REPLRSLRI----LHSARALFVGLRDGVLRVPLercaay....
ENSP00000371936  EIELFPErr................REPIRSLQI----LHSQSVLFVGLREHVVKIPLkrcqfy....
ENSP00000357908  EPILLEEidaysparcsgkrtaqt.ARRIIGLEL----DTEGHRLFVAFSGCIVYLP-lsrcarh...
ENSP00000251772  ESVVAQE..................GSPILRDLVL---SPNHQYLYAMTEKQVTRVPV..........
ENSP00000323194  ETVQVVD..................PGPVLRDMAF---SKDHEQLYIMSERQLTRVPV..........
ENSP00000356000  MVSVLKD..................GSPILRDMAF---SIDQRYLYVMSERQVTRVPV..........
ENSP00000358696  ETVPVVD..................GSPILRDLLF---SPDHRHIYLLSEKQVSQLPV..........
ENSP00000352288  DSILVEI..................NKRVKRDLVL---SGDLGSLYAMTQDKVFRLPV..........
ENSP00000296440  STQSIQQ..................GSAVSRDLTF---DGTFEHLYVMTQSTLLKVPV..........
ENSP00000296474  VSNFSLGds................GQPVQRDV-----SRLGDHLLFASGDQVFQVPI..........
ENSP00000261918  EIQPFRR..................AAAIQTMSL----DAERRKLYVSSQWEVSQVPLdlcevy....
ENSP00000317128  RVVTVAY..................GEPVHHVMQFDPA--DSGYLYLMTSHQMARVKV..........
ENSP00000445569  HSQQVGPp.................GSAISPDLLL---DSSGSHLYVLTAHQVDRIPV..........
ENSP00000258526  VIYEIKE..................ETPVFYKLVPDPV--KNIYIYLTAGKEVRRIRV..........


Statistics on alignment.   Save alignment.

Jump to [ Top of page · Alignments · Add alignments from genomes ]

Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

You may enter many sequences at once using
FASTA format:

Upload a multiple sequence FASTA file:




Model: 0049402 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Danio rerio 58 (pseudogenes) - Zebrafish
NoYes   Gallus gallus 58 (pseudogene) - Chicken
NoYes   Homo sapiens 58 (pseudogenes) - Human
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Saccoglossus kowalevskii v3.0
NoYes   Petromyzon marinus 76_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Lepisosteus oculatus 76 - Spotted gar
NoYes   Gadus morhua 76_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 76_4 - Torafugu
NoYes   Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes   Oryzias latipes 76_1 - Japanese medaka
NoYes   Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes   Poecilia formosa 76 - Amazon molly
NoYes   Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes   Astyanax mexicanus 76 - Mexican tetra
NoYes   Danio rerio 76_9 - Zebrafish
NoYes   Oikopleura dioica
NoYes   Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 76 - Vase tunicate
NoYes   Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes   Adineta vaga
NoYes   Octopus bimaculoides 280
NoYes   Crassostrea gigas 22 - Pacific oyster
NoYes   Lottia gigantea - Owl limpet
NoYes   Helobdella robusta
NoYes   Capitella sp. I
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Daphnia pulex - Common water flea
NoYes   Strigamia maritima 22
NoYes   Sarcoptes scabiei
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Pristionchus pacificus
NoYes   Meloidogyne incognita - Southern root-knot nematode
NoYes   Meloidogyne hapla
NoYes   Onchocerca volvulus 22
NoYes   Brugia malayi WS250 - Agent of lymphatic filariasis
NoYes   Caenorhabditis japonica
NoYes   Caenorhabditis brenneri
NoYes   Caenorhabditis remanei
NoYes   Caenorhabditis elegans 76_235 - Roundworm
NoYes   Caenorhabditis briggsae 2
NoYes   Trichinella spiralis 22
NoYes   Hymenolepis microstoma
NoYes   Echinococcus multilocularis
NoYes   Echinococcus granulosus
NoYes   Taenia solium - Pork tapeworm
NoYes   Schistosoma mansoni
NoYes   Mnemiopsis leidyi - Sea walnut
NoYes   Acropora digitifera v1.0
NoYes   Nematostella vectensis 1.0 - Starlet sea anemone
NoYes   Hydra vulgaris
NoYes   Amphimedon queenslandica
NoYes   Trichoplax adhaerens
NoYes   Proterospongia sp. ATCC 50818
NoYes   Monosiga brevicollis
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Ascaris suum Victoria/Ghent - Pig roundworm
NoYes   Caenorhabditis elegans WormBase WS218 - Roundworm
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Petromyzon marinus 69_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Gadus morhua 69_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 69_4 - Torafugu
NoYes   Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes   Oryzias latipes 69_1 - Japanese medaka
NoYes   Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes   Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes   Danio rerio 69_9 - Zebrafish
NoYes   Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 69 - Vase tunicate
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Caenorhabditis elegans 69_215 - Roundworm
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   Heliconius numata
NoYes   Loa loa v3.3 - Eye worm
NoYes   Wuchereria bancrofti v1.0 - Agent of lymphatic filariasis
NoYes   Brugia malayi v1.0 - Agent of lymphatic filariasis
NoYes   Nicotiana benthamiana 0.4.4
NoYes   NCBI 2017_08 genome
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   NCBI viral sequences (Viral)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   UniProt viral sequences (Viral)
NoYes   ALL (only advised for small superfamilies)


Jump to [ Top of page · Alignments · Refine alignments · Add alignments from genomes ]