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CbiG N-terminal domain-like alignments in Thermosipho africanus TCF52B

These alignments are sequences aligned to the 0054956 model.

Sophisticated options are available for refining alignments:


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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                               10        20        30                 40        50  
                                                |         |         |                  |         |  
d3eeqa2                             sli---ENLWRGICIISASEDAFSAGETIKEKLKSFEIP.........VVHYRYKDAEIETIWK
gi|217077154|ref|YP_002334870.1|  ...-------MKIAILSITKNGAELSKRLFNSIKCDVYVkedfkfngaKVIDFLLKRFVKKIFK


                                          60        70        80        90       100        110     
                                           |         |         |         |         |          |     
d3eeqa2                             CYDAIVFVMALEGATRIVCKYAKSKTEDPAIVCIDDKINYVIPLLGGH.WGANDIARELSVILN
gi|217077154|ref|YP_002334870.1|  MYDALVFIMATGIVVRVIADCLKDKFDDPAVVVIDEKGNFVISLLSGHvGGANELAKRLSKILD


                                      120       130       140       150       160       170         
                                        |         |         |         |         |         |         
d3eeqa2                             STPIITTAAEIKGKLSIERIANILIAKIINPENIVKINAALLRDESICIDGIDVNVNFP.....
gi|217077154|ref|YP_002334870.1|  AVPVITTASDVNGIESIDMIAKRYGFEIERREDLSKVSAAIVNKEHVDFILDSELDIDVesksy


                                         180       190       200                      
                                           |         |         |                      
d3eeqa2                             ..ENIKVNSEECSYIISLRG---------------dkeykdkivvwlkpl
gi|217077154|ref|YP_002334870.1|  idSTAQVYITNKVVFSKKPHVILRPKNLVVGIGCK...............


Statistics on alignment.   Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

You may enter many sequences at once using
FASTA format:

Upload a multiple sequence FASTA file:




Model: 0054956 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Thermosipho africanus TCF52B
NoYes   Acidianus hospitalis W1
NoYes   Sulfolobus tokodaii str. 7
NoYes   Sulfolobus islandicus Y.N.15.51
NoYes   Sulfolobus solfataricus P2
NoYes   Sulfolobus acidocaldarius DSM 639
NoYes   Vulcanisaeta distributa DSM 14429
NoYes   Pyrobaculum calidifontis JCM 11548
NoYes   Pyrobaculum oguniense TE7
NoYes   Thermoproteus neutrophilus V24Sta
NoYes   Pyrobaculum aerophilum str. IM2
NoYes   Thermoproteus tenax Kra 1
NoYes   Sulfolobus islandicus LAL14/1
NoYes   Sulfolobus islandicus REY15A
NoYes   Sulfolobus islandicus HVE10/4
NoYes   Sulfolobus islandicus Y.G.57.14
NoYes   Sulfolobus islandicus L.S.2.15
NoYes   Sulfolobus islandicus M.16.27
NoYes   Sulfolobus islandicus M.14.25
NoYes   Sulfolobus islandicus M.16.4
NoYes   Sulfolobus islandicus L.D.8.5
NoYes   Sulfolobus solfataricus 98/2
NoYes   Sulfolobus acidocaldarius SUSAZ
NoYes   Sulfolobus acidocaldarius Ron12/I
NoYes   Sulfolobus acidocaldarius N8
NoYes   1_050719N (meta-genome)
NoYes   2_050719S (meta-genome)
NoYes   Bath Hot Springs, planktonic community (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)
NoYes   Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)
NoYes   NCBI 2017_08 genome
NoYes   Soil microbial communities from Minnesota Farm (meta-genome)
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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