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Insect pheromone/odorant-binding proteins alignments in Heliconius melpomene

These alignments are sequences aligned to the 0046072 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                  10        20          30             40        50 
                                                   |         |           |              |         | 
d1c3za_          ........................e-TPREKLKQHSDACKAESGVSE..ESLNKVRNREE.VD....DPKLKEHAFCILKRAG
HMEL016108-PA  ...lvmcvlmqackvspsqeimhkl---TKGFATAFEQCKQELNLGD..NIMQDFLNYWR.EEyellNRDTGCAIMCMAQKHD
HMEL016107-PA  .......................as------FLKVLEECRQELNIGD..NVLADMYYFWK.LDrtliHRDTGCAIVCMSKKLN
HMEL004625-PA  .....................lgfg--------EALQSCREESQLTE..DKMEEFFHFWR.DDfkfeDREVGCAMKCMSSHFN
HMEL022500-PA  ...................mshvta-----HFGKSLEECREESGLSS..DILDEFQHFWS.EEfqvvHRELGCAIICMSNKFL
HMEL010232-PA  ....................mtmkq--IKNTGKMMRKTCQPKNNVAD..EKIDPLNKGEF.IE....EKEVMCYVACIMKMAN
HMEL010231-PA  ....................trqql---KNSGKLMKKSCMPKNDVTE..DQIGQIEQGKF.LE....ERNVMCYIACVYTMTQ
HMEL010229-PA  ...................rqqlkn-----SSKLLKKNCMAKNDVTE..DLVGDIEKGKF.IE....DQKVMCYIACIYQMSQ
HMEL015928-PA  .......................hg--QKEKVKEYAAECMKESGAKP..EVLADAKKGHL.VD....DEGLKKFILCFFQKTG
HMEL013351-PA  ......................efsEEIKEIIQHVHNECVAKTEVTE..EDIANCENGIF.KE....DIKLKCYMFCLLEEGS
HMEL007613-PA  ......................alsDEQKDKLKKHRSECLAETKADE..QLVNKLKTGDFkTE....NEPLKKYSLCMLIKSE
HMEL010230-PA  ......................mtrPQLKKTLTIMKNQCMPKHRVTN..EKVGQIEQGVF.VE....DHDVMCYIACVYKTAQ
HMEL008689-PA  .........................-EMAELAKMLRDSCIEETGADI..ALIDKVNDGADlMP....DPKLKCYIKCVMETAG
HMEL007612-PA  ......................altDEQKDKLKKHKSECLAETKVDE..KLVDKLKTGDFeIE....NEPLKNYTLCMLVKSG
HMEL010226-PA  .......................sh------FEMLGKECIKDNLISA..DDIKNLRAKKI.PS....GENAPCFLACMFKKLG
HMEL006095-PA  ........................k----AMFRAHSEACLPQSQVDP..KLLDNLLQGEL.VE....DAALKRHVYCVLLKCK
HMEL003711-PA  .....................dits-----QLVQISADCIASNGLTE..EVLKQVMEWKL.EN....NEPTKKLLFCFGTKLN
HMEL015920-PA  ...................ppeyag-----EILKAAADCIDSTGAGV..DAVQKVISANL.EN....TEPFKKFLYCFSSKSG
HMEL022602-PA  .......................ei----------IMTCAKDYPITP..EDIEQLKNSKL.PD....N--AKCLFACAYKTSG
HMEL022573-PA  .......................lk---------AAADCIESTGVGA..DAVQKVIAANL.EN....TEPFKKFLYCFSSKSG
HMEL015922-PA  ................ipkefvpdi-------IKASAECADKLGLDTl.NILSKFFSGEL.KD....SESVRQYMYCLGTTSG
HMEL015921-PA  ......................dil--------KTAVDCTDSSGAGV..DALQKMASANF.ED....TEPFKKFLYCFASNSG
HMEL008322-PA  ......................vmv------------DCNDTFRVEM..SYLESLNKSGSfPDet..DKTPKCFVRCVLEKSD
HMEL018118-PA  ......................ivm---------ASSKCIEELNLEK..DTMQKFFAWQL.SD....SESTRKYTYCLGTGSG
HMEL010224-PA  ......................mtdDEMREEFMRITMICSKDYKVDM..KDLLSLQQLNI.PT....KKDVKCLLACAYKKTG
HMEL015923-PA  ...............kefiddaing----------SGQCAEELGLPG..DTLNKLLSNNF.ED....SQAMRKYIYCLGIALD
HMEL010228-PA  vflvfgvvavslgsvsafsdeernk--IYAGMLPLVLECSKDYGLTE..DDLKAAKESGS.IG....-SINPCLMACVFKKIN
HMEL015914-PA  .....................pgiv--------QASSKCIEEMNLDK..DTMQKFFSWQL.GD....SESTRKYMYCLGVKSG
HMEL005621-PA  .....................vksh---VEQFKRNMSECLKEVQLND..KRQVRRLSPKK.ES....PVHGECLIACVLKRNG
HMEL015924-PA  ....................pkefi----EDAIKGSVHCTEELGLPV..DTLNMFLSDNF.ED....SPTMRKYIYCLGLAVD
HMEL022521-PA  .........................-EIKKWFIQQAVECSKEHPVTG..EELQQMKTKHKiPE....SMSAKCLVACIFKRIE
HMEL010227-PA  .......................ya-----TMLPHILQCSTEYGITE..DELKASKENEK.FG....-SINPCFMGCIFKKIH
HMEL015917-PA  ................lpparvpgi-------AQASSKCIEELNLEK..DTLQKFLAWEL.SD....SESTRKYVYCLGTESG
HMEL017002-PA  .......................ks------LTAVAHSCMEKINGTE..EDLEYLRKDPP.F-....PEKSACIIVCLLKKIG
HMEL015918-PA  ..................pkdyipa------VEKASFECIKKLKLEEeqISLQGFLNWEL.SE....SDNTKKYIFCLANGSG
HMEL007611-PA  ........................i-----------EECIEKLHVNR..ALVEKLKSGNSkLF....DKNLKRWLLCFFEKTC
HMEL006421-PA  .......................ks------LTAVAHSCMERINGTE..EDLEYLRKDPP.F-....PEKSACIIVCLLKKIG
HMEL015916-PA  ......................div--------QASSKCIEELNLEK..NILQKYLAWEL.SD....CESTRKYMYCLGTQSG
HMEL015927-PA  ................ftedaikgs-----------VHCTDELGLPV..DTLQTFLTSKY.ED....SPLMRKYIYCLGIMLD
HMEL007175-PA  ......................alv--------RMAQSCVIKVRASP..KDVRAYFTNSP.PI....TRSGQCFAACMLEQSD
HMEL012883-PA  .......................ve-----PFRRNLTECARQVKASM..VDVENFLKRIP.QT....SLQGKCFVACILKRNS
HMEL015925-PA  ................ftedaikgs-----------VHCTDELKLPV..ETLQTFLTSKY.ED....SLPMRKYIYCLGIMLD
HMEL022532-PA  ......................dmi----------TNECLTEM----..-YPKNIYRYPLhID....RNDVPCIIHCVLKKFG
HMEL007173-PA  ......................dmi----------TNECLTEM----..-YPKNIYRYPLhID....RNDVPCIIHCVLKKFG
HMEL022540-PA  .......................ka----------------------..-----------.--....-----CVLHCFLENLH
HMEL009897-PA  ......................dek----------------------..-----------.--....-RIAGCLLQCVYRKVK
HMEL007174-PA  .....................msdi---------VAEQCLNEMYP--..----KGRRIQF.E-....ESDEPCIIYCVLKKLG
HMEL006666-PA  .........................----------------------..-----------.--....-------VQCVFEKSG
HMEL022553-PA  ........................i----------------------..-----------.--....---------CLLQINN


                        60        70             80                    90       100                 
                         |         |              |                     |         |                 
d1c3za_          FIDASGEFQLDHIKTKFKENSEHP.....EKVDDLVAKC....AVK........KDTPQHSSADFFKCVHDNR-s........
HMEL016108-PA  LL-TEDGIHHEKVHGFTKSHGADDela..KQLVTMIHECe...KSNag......VSDECMKTLEVAKCFR----tkihelkwa
HMEL016107-PA  LLDTSGKLHHGNAEEFALQHGAADdma..KKLVTTVHEC....EQKhel.....EEDQCLRALEIAKCFR----gamheinwa
HMEL004625-PA  LLTDSHRMHHENTDKFIKSFPNGEvls..KRMISIIHTC....EQQfda.....LEDHCWRILRIAECFK----vackkegia
HMEL022500-PA  LMHDDARMHHVNMHDYIKSFPQGElls..EKMVNLIHNCekq.FDD........IEDECSRVVKVAACFKE---sakeegiap
HMEL010232-PA  TI-KNNKLNYEAAIKQADMLFPDEik...EPAKEAITACrkv.V-Dd.......YKDLCESSFYTTKCIYNYNPsifffp...
HMEL010231-PA  VV-KNNKLNYEATIKQVDLMFPPDmk...DAVKAAVEHCkd..ISKk.......YKDICEVSYWTAKCMYDFDPnnfvfp...
HMEL010229-PA  LV-KNNKLNVEASIKQVDMMFPPEmk...DATKASIENCkd..VSKk.......YKDLCEASFWTAKCLYEDN-pknfff...
HMEL015928-PA  VLSSDAKLNTDVALSKLPAGI-DK.....VTAAKVLNDC....KNKk.......GATHADTAFEIFKCYYTH--tkqhi....
HMEL013351-PA  LVDENDNVDYDMMISLIPEQY--T.....DRVSKMITACk...HLDtp......DKNKCQRAFDVHKCSYDSDPkvn......
HMEL007613-PA  LMTKDGKFKKDVALAKVPNAA-DK.....PAVEKLIDLCl...ANK........GNTPHQTAWNYSKCYHEKDPkhs......
HMEL010230-PA  VV-KNKRLDKDLVSKQIDILYPAEir...EAVKLSTVKCi...PVQyn......YEDECEGIFYSVKCLYEDN-panfifp..
HMEL008689-PA  MM-SQGAVDVEAVVAVLPPEL---.....QRHADKLRAC....GTKa.......GANDCDTAFLTQACWQ----ggckedy..
HMEL007612-PA  LMSMDGEFKKDVALAKVPNAA-DK.....QLVGQLIDLCl...ANK........GAAPEETAWNYSKCYHQK--dakh.....
HMEL010226-PA  IMDDAGLLQKETVLDLARKVFNDEdei..KLIGDYLHSCs...HINtesvgd..GDKGCDRSMMAYKCMI----e........
HMEL006095-PA  VISKDGKLQKTAVLGKMAHRA-DS.....KNITKVLERC....ADQp.......GDTPEELAWNLFRCGYNK--kavlf....
HMEL003711-PA  TTDKNGHVILNEALKLAVSKK--R.....PVFGDAIKRC....NDQe.......GSDKYDTLFKIIICMRD---q........
HMEL015920-PA  YVDSDGHFIVDQMTKLIGNHK-DK.....AKFIDNLNLCn...KSE........GGNTIDTIYQIAVCFKDNSPiyf......
HMEL022602-PA  MMDDQGKLSVEGVNKLAHTFLADDperl.KKAEQFTDACks..VNEeevsd...GDKGCERAALIFKCSIE---kapqv....
HMEL022573-PA  YVDGDGHLIVDQMIKLVGNHK-DK.....AKFIDVINLCn...KSK........GGNTLDTMFQTTVCFKQNSPiy.......
HMEL015922-PA  YVNDDGRLNKDRLGKVVGE---HK.....SKVESVVDECn...KAK........ASDKYETVYKAVVCFREN--sg.......
HMEL015921-PA  YVDSDGHFIMDKMTKLIGNHK-DK.....AKYVDAINLCn...KRK........GGRTIDTIYELANCFKDHSPiyf......
HMEL008322-PA  IVSGDSQFNVTRTAEVFSQIR-DTsq...NDIIKMATAC....SDRp.......EKCKCERSYQYLKCLLET--ti.......
HMEL018118-PA  YIDSDGSIIKNEVLDI---VGSHR.....DRVNAIIDECn...KSK........YNDKYETAFRSVMCFN----e........
HMEL010224-PA  SMNKEGLYDIEASYRIAEMTKNGDpkrl.ENAKKLVDICak..V-Ndetvsd..GEAGCDRAGLIFKCVVENA-pkv......
HMEL015923-PA  VGDGTGSLKHSLSKYASNDRR--K.....AEITKTIDECn...KEK........ASDKYEKAYKVSTCYLNT--ssvq.....
HMEL010228-PA  VINDKGLFDVDKAGELSQKFLTETddq..QKATEIIKTCas..VNEkdvsd...AEKGCDRSKLLFDCLLP---fk.......
HMEL015914-PA  YIADDGSMVKKEVLGLAGSHG---.....GNIDGVIDECn...NLK........YSDKYEAVFKIVMCFHE---ks.......
HMEL005621-PA  VI-ENGKIYKDNLLSLVRKFYGKDeklm.KKLEKNVDRCiea.SVK........NKDDCTVASYLNEC------t........
HMEL015924-PA  VSEEDGSLKHSLSKYANNDKR--K.....AEVIQRVDECn...KQE........ANDKYEKVYKVSTCYLNT--ssvq.....
HMEL022521-PA  WIDEKGMFVKEKAYKTSEKDYLNDqvkl.DKAKELYESCs...KVNsetvtd..GEKGCERSNLLAICL-----t........
HMEL010227-PA  VINKEGIFNVEKAEKLSENFLVHDedk..KKASAVIKACa...TINdedvsd..GEKGCDRAKLLFECLL----pfrqq....
HMEL015917-PA  YMAKDGSIIKNEVLEVVGN---HR.....NRVDGVIDECn...ERK........YNDKYEAVFHNVICFNE---ksg......
HMEL017002-PA  VVKDDNFSKTGFVTAVTPLVFHNRkkl..EHMKNVSEKCdke.I-Tt.......PEDTCQLGNSITACIFKYA-pelhy....
HMEL015918-PA  FFADDGSILKDKVLAIMGKYR---.....DRVDKVIDECs...KVK........YDNKYEEVYRMEVCFRD---l........
HMEL007611-PA  VMTPDGVLRQDVVLKDIPDQD--K.....SKIEKITSICl...YQK........LHFAVDTAWNYLNCFREKDPky.......
HMEL006421-PA  VVKDDNFSKTGFVTAVTPLVFHNRkkl..EHMKNVSEKCdke.I-Tt.......PKDTCQLGNSITACIFKYA-pelhy....
HMEL015916-PA  YIANDGSIVKNKA---FEVVGSHR.....NRVNGIIDECh...EFK........HNDKYEAVYRNVMCFNK---ks.......
HMEL015927-PA  VGEEDGSLKHSLSKYAGNDKR--K.....VEVLKTIDECn...KLE........ASDKYEKAIKVSTCYLNKS-pllf.....
HMEL007175-PA  VI-NHGKVNRELLVHLAGLVN-GKnsrvvRKLYGISRLCld..SIEg.......MSDRCQLASTYNDCL-----ne.......
HMEL012883-PA  II-KNNKILKENLLEANKAVYGEDsevl.SRLKLAINECsdv.VAN........IFEICEFSSVFNDCM-----.........
HMEL015925-PA  VGDENGNLKHSLS--KYAGNNKRK.....AEILETIDECn...KLE........ASDKYEKALKVSTCYLN---kssll....
HMEL022532-PA  IMSNDGVINTRNYYRRVRAIHRYDpr...VLISDVGETC....AQNingmnl..DHDVCKKAKVFNDC------t........
HMEL007173-PA  IMSNDGVINTRNYYRRVRAIHRYDpr...VLISDVGETC....AQNingmnl..DHDVCKKAKVFNDC------t........
HMEL022540-PA  MTGDNGLPDRYLVTHSLIKDEKNEdlr..DFLQESIEECfq..ILDnen.....TEDKCEFSKNLLTCLSE---kgranc...
HMEL009897-PA  AVDGYGFPTLEGLVGLYSDGVNERgyf..MAVLEASREClmrnHDKfsrtvpmdNGRNCDISFDIFECIS----drigey...
HMEL007174-PA  IMNSNGQINVD-------------.....----------....---........--------------------m........
HMEL006666-PA  FLIDKQTLNKEAYRAHLRQWVEGHkgwe.DAVEKAIKDC....VDRdlrqy...LDNPC-KAYDVFTC------t........
HMEL022553-PA  LMKDDTTIDKDAVTAFMQKWG-DAngdfkDAVDVAIDRCv...KGDlpg.....PPELCEAT------------kmifc....


                              
                              
d1c3za_          .............
HMEL016108-PA  pdmetile.....
HMEL016107-PA  pkvdvaiseilte
HMEL004625-PA  ptmellmaefime
HMEL022500-PA  evami........
HMEL010232-PA  .............
HMEL010231-PA  .............
HMEL010229-PA  .............
HMEL015928-PA  .............
HMEL013351-PA  .............
HMEL007613-PA  .............
HMEL010230-PA  .............
HMEL008689-PA  .............
HMEL007612-PA  .............
HMEL010226-PA  .............
HMEL006095-PA  .............
HMEL003711-PA  .............
HMEL015920-PA  .............
HMEL022602-PA  .............
HMEL022573-PA  .............
HMEL015922-PA  .............
HMEL015921-PA  .............
HMEL008322-PA  .............
HMEL018118-PA  .............
HMEL010224-PA  .............
HMEL015923-PA  .............
HMEL010228-PA  .............
HMEL015914-PA  .............
HMEL005621-PA  .............
HMEL015924-PA  .............
HMEL022521-PA  .............
HMEL010227-PA  .............
HMEL015917-PA  .............
HMEL017002-PA  .............
HMEL015918-PA  .............
HMEL007611-PA  .............
HMEL006421-PA  .............
HMEL015916-PA  .............
HMEL015927-PA  .............
HMEL007175-PA  .............
HMEL012883-PA  .............
HMEL015925-PA  .............
HMEL022532-PA  .............
HMEL007173-PA  .............
HMEL022540-PA  .............
HMEL009897-PA  .............
HMEL007174-PA  .............
HMEL006666-PA  .............
HMEL022553-PA  .............


Statistics on alignment.   Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

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Upload a multiple sequence FASTA file:




Model: 0046072 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Strigamia maritima 22
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Heliconius numata
NoYes   NCBI 2017_08 genome
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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