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Insect pheromone/odorant-binding proteins alignments in Drosophila mojavensis 1.3

These alignments are sequences aligned to the 0046072 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                                                              10    
                                                                                               |    
d1c3za_        ......................................................................e-TPREKLKQHSDAC
FBpp0172403  ....................................................................yppPELLKELQPVHDSC
FBpp0172405  ....................................................................rnv---LKMSKLFHDIC
FBpp0172623  ................................................................seyvikn---KEDMLSYREAC
FBpp0162222  ...................................................................vpev--VKKHVKKLHKRC
FBpp0171552  ...................................................................yvvk--THEDLVRFRNIC
FBpp0165526  .......................................................lvllaavavsckphed-YDKEHIAEVAEEC
FBpp0172396  ................................................................akftirt---HEDAVEAHEEC
FBpp0162729  ...................................................................vtmq-QFLQSLDMMRNGC
FBpp0170299  ....................................................................eltDEQKKLIKQHVAQC
FBpp0167754  .....................................................................lsDEQKARAKANAGAC
FBpp0170300  ...................................................................ltae--QRSTIRANAMQC
FBpp0169487  ..................................................................yklrt---AEDLQKVRKEC
FBpp0167752  .................................................................yvmaqk---PEMTQQVVSSC
FBpp0165524  ......................................................................eDQMWAAGKLMRDVC
FBpp0166705  .....................................................................kf-------VEKAEQC
FBpp0173410  .....................................................................wvPKTANEIKEIRGEC
FBpp0170304  ..................................................................qcnpn------FQQLMKQC
FBpp0167756  ...................................................................aaya--------KKQQEC
FBpp0170159  ......................................................................d--------EMVTKC
FBpp0168971  ......................................................................v-----------RLC
FBpp0172397  ........................................................tlwlavaladltgda--------QILEKC
FBpp0165525  .....................................................................sh--------------
FBpp0169529  .................................................................nnnnnn--------------
FBpp0167890  ......................................................................e---------VEDKC
FBpp0167755  qqaklsqdllqscmreteismsqlkffrlsllfndnnnsdnelaiapvdgeaelnavnnapemdyvsgspy--------------
FBpp0172710  ................................................................fdaimhg-------------C
FBpp0165457  ......................................................................lPEVQQMIDRTKKSC
FBpp0162485  ....................................................................dkr--------------
FBpp0172397  ...................................................................qcsg--------------
FBpp0164727  ....................................................................ilr---------ARDQC
FBpp0168448  ...............................................................ckhpdghs--------DIIDSC
FBpp0169132  .....................................................................ne------------KC
FBpp0172943  ....................................................................alh--------------
FBpp0168471  ...............................................................vpqkcqqh--------------
FBpp0159631  .....................................................................nq--------------


                    20           30                40        50          60         70             8
                     |            |                 |         |           |          |              
d1c3za_        KAES.GVSE...ESLNKVRNREE...VD.....DPKLKEHAFCILKRAGFIDA.SG.EFQLDHIKTKF.KENSEHP.....EKVD
FBpp0172403  VGKT.GVTE...AAIKEFSDGEV...HE.....DEKLKCYMYCVFDETDVLHE.DG.EVHLEKLLDRL.PDSM--H.....DIAV
FBpp0172405  VEQT.GVSE...AAIKEFSDGEI...HD.....DEKLKCYMNCLFHEFEVVDD.DG.DVHLEKLFSSV.PHSI--R.....DNLM
FBpp0172623  VKEL.KIPN...ELVEQYQKWVY...PN.....DAQTQCYLKCVFTKFGLFDN.QS.GYNVENIHTQL.SRGHANHd....DVLH
FBpp0162222  VAKT.GVSE...ELLEHAQKGNL...PN.....DPTFKCFLHCMFDMFGLIDS.DN.VMHLEALVEVL.PVEI--H.....DKIL
FBpp0171552  AEQV.HASA...EDVAKYVKWDF...AD.....EEKSRCYLKCIFEHFGLFDA.TH.GFDVHKIHEQL.AGGS-HVdha..DEVH
FBpp0165526  KTES.GATD...EDVEHMMQHEP...AD.....SHESKCLRACMLKKFEIMND.EG.KLSKENALEMV.KLSSKDDaeke.AAAA
FBpp0172396  QEKY.NVPE...DIYEQYLNYVF...PE.....HRRTACYVKCFVEKMGLFDE.KK.GFNEKAIIAQF.TAQNYKDl....ESVR
FBpp0162729  MGKF.KVPL...DTLDRLRDGDFsf.EP.....SQDLLCYTKCVAQLAGILTK.KG.DFSVNKAMAQM.PIILPAElq...DPAQ
FBpp0170299  AEEV.KLTE...EEIARVKAKDF...TNp....SENMKCFANCFYEKTGTL-K.DG.VVQEEVVLKKL.GAII-GE.....EKTR
FBpp0167754  IEQE.GVTK...EQAMALREGKF...ENv....DEKVKCFANCFLEKSGLL-A.DG.QIKSDVVLEKL.GPIV-GV.....DKVK
FBpp0170300  TQQE.GNTK...EQAIALRNGNF...EDa....DDKVKCYANCFLERAGFI-V.EG.QINGDAVLQKL.APAA-GA.....DQVK
FBpp0169487  AEAN.KVTE...ALIAKYKTFEY...PD.....DEITRNYIKCIFNKFDLFED.TK.GFKVDNLVAQL.GQGREDK.....TQLK
FBpp0167752  MTEN.GVTE...QELNGLKSGEVk..LEdv...KDNVKCASQCVMAKLGFMNS.KG.VLQDDKIMEFF.KDGP-MK.....GQAE
FBpp0165524  LPKFpKITT...EIADGIQKGIL...PD.....DKDAKCYINCIMEMMQTM-K.KG.KFMVESTLKQV.ELLM-PEsyk..ASYR
FBpp0166705  KDEV.GASD...AEVQTIVKHEA...AS.....TYEGKCLRACIMKSFHVLGE.NG.KLDVEAGREKA.KQYTGSDpakl.EMAL
FBpp0173410  LKAH.PLSV...EQINKLKQTEF...PD.....EPEVRQYLLCTATKLDIFCT.HE.GYHADRLAKQF.KMDL-TE.....EEAL
FBpp0170304  MDET.KLTE...AELKEFMGSGMng.NA.....NENLKCYSKCLMEKQGHL-V.NG.QFNSEALLNTL.KNVPQ-Mkdkm.AEIT
FBpp0167756  IKEL.KIPA...NEATQITANKD...VSnp...SAAYKCYHDCLYKKMGLMAP.DG.KANDERIVKYA.QARF-SApv...DKIK
FBpp0170159  LTDN.DIEKaeyETLLSQNNSNId..MDsi...DKKYKCYLHCMATEMHILDS.NG.HVDIELVNEHE.ELTP---.....-KDR
FBpp0168971  AQQT.ELSL...KELLQFHTNDA...TNv....TEATQCFTHCLYEQMGLM-H.DG.VFVEQDLVGHL.SDAI-NP.....TWWP
FBpp0172397  LGSI.SSPErieSDLRKLAKYAS...WT.....SEEVPCLMRCLASEKGWFDI.--.--DANKW---H.KQR-VAE.....ELGA
FBpp0165525  ----.----...--IEEMVLNKE...DA.....SHESKCFRRCMLKQFEIMGE.GQmQFDEAKTVDMM.NMMFPDKe....ANSK
FBpp0169529  ----.----...--------NNS...NT.....SESGGCVALCFFEEMNMVDG.SG.QPDRRKVSYLL.TKDLRDRelr..NFYM
FBpp0167890  LTEN.NTTRm..DLYAKIDQAKT...EGhfeniEMKYMCYVHCAAAELEILDA.NE.QLDIEVFKTME.HLM----.....EENA
FBpp0167755  ----.----...--------LDM...KR.....NEPLQCFVRCLYESLGIM--.--.--HYDMMLEEAfKMQL-DNlm...QRLK
FBpp0172710  NASF.ITTM...SNVLQFNNTGKl..ADet...DLTSMCYFRCFFEKAGLV-E.NF.RLVPNIVRKYM.W------.....PATG
FBpp0165457  LQKL.RMPA...VQRSLIREPNP...T-.....-EQEKCLLECVLKGIQIMDDsTN.KLNLRRVEQLT.SLVT-EDnkvamALSS
FBpp0162485  ----.----...-----------...--.....--IAGCLLHCVYARNNAIDK.NG.WPTLDGLVGFY.SEGVHEHgff..MATL
FBpp0172397  --QL.NATN...VQMLQYST--L...KP.....KESIPCLFQCFADAMGFYDE.AG.NWRLLNWQQAF.GPTH---.....QEHQ
FBpp0164727  FRSE.RISP...NQRLALDRQQY...SN.....VPYVHRYVYCFWTRLQLWHD.GT.GFDPMRIVESFgGPRRLNL.....EQTV
FBpp0168448  SKET.GFKMps.AKEQSLVDLTA...TR.....AISGTCFAKCVFEKMNVM-K.DD.NLDMDSVKKYL.NEKFSQDp....EYVK
FBpp0169132  KEYL.QTPA...MQMESSAEGKRghrHH.....SFLPPCYISCIFNETGIY-K.DN.DVDIDALNDYL.KNIYKDNaele.SIAT
FBpp0172943  ----.----...-----------...--.....----ACMAECVFKKNGFLYS.NG.TVNLSVMQRSL.EQRYKKDaala.KLVA
FBpp0168471  ----.----...--VNQLKSANPk..YP.....AYAHLCYPECIYRETGAL-I.NG.RLQMDKVREYL.QEHV-HRrdr..E---
FBpp0159631  ----.----...-----------...--.....-------LRCLVEQLGLWTD.EQ.GYNARRIAKIF.AAHQ-QT.....EELM


               0                       90       100                                         
               |                        |         |                                         
d1c3za_        DLVAKC....AVK...........KDTPQHSSADFFKCVHDNR-s................................
FBpp0172403  NMGKRCl...YPK...........GDTKCERAFWLHRCWKQAD-pkhyfl...........................
FBpp0172405  AMSQECi...HPI...........GDTLCHKAWWFHQCWKKAD-pkhyflp..........................
FBpp0172623  GQIEAC....LDKneq........GSNACEWAYRGADCLLKNH-lklv.............................
FBpp0162222  ALVDACg...KKK...........GVDGCDTAYQSVECYMAT--d................................
FBpp0171552  QKIADC....ADNnaq........GSDACTWAYRGGMCFMRSN-lqlv.............................
FBpp0165526  EIVDKCe...GIEv..........PEDHCDAAAAYEKCIID---hmhehgla.........................
FBpp0172396  HGLEKCid..HNEa..........ESDVCTWANRVFSCWL----pinrh............................
FBpp0162729  KALNHC....KDEpka........HKDQCAQVYYISKCMADY--drpnf............................
FBpp0170299  QALTKCs...GIK...........GENKCDTANKLYQCFESFN-p................................
FBpp0167754  AAQEKCd...SLK...........GSDKCDTGFQLYQCYYK---q................................
FBpp0170300  AALATCa...SIK...........GANKCDTGFQIYRCFYRN--.................................
FBpp0169487  ADVEKC....ADKneq........KSPANVWAYRGFKCFLS---knlpl............................
FBpp0167752  KALEACg...STT...........GANPCDTAFQIMVCLEK---hvn..............................
FBpp0165524  KGISEC....KDAavg........IKNNCDAAHAQLTCFR----skie.............................
FBpp0166705  EIGDICa...AIPv..........PDDHCEAAEKYSLCFK----seahkrgl.........................
FBpp0173410  QIAQGCids.NPE...........KSPADVWAFRGHKCMMAS--k................................
FBpp0170304  SGVNACk...DMK...........GTNDCDTAFKVFMCLKEHK-.................................
FBpp0167756  TKLTDCmt..GVKk..........VPNACEHIYNLELCMS----k................................
FBpp0170159  EVFVECk...KIHdg.........GEDFCEYAFSMTMCLLE---s................................
FBpp0168971  Q--RACh...SLR...........GANKCETAHKIHQCIQ----q................................
FBpp0172397  DIYNYC....HYElrrk.......SRDACSYAHRGLRCLKQ---aelhagnsist......................
FBpp0165525  AIAAKC....NQApng........ITDECEVCHAISMCMLR---emraasyki........................
FBpp0169529  DTVQQCfr..YIEhsrysnnn...SNNKCSQARELVKCMSEY--akaqcdd..........................
FBpp0167890  AVIEEChr..VISl..........VEDKCAYAFQMLVCYIKS--yrr..............................
FBpp0167755  PELKECk...NMK...........SRNRCEAAYKLHLCY-----.................................
FBpp0172710  DSIEYC....ESQgin........EQNACKRTYAIAQC------a................................
FBpp0165457  SLAQSCnr..SVS...........TQKPCEAAHQLNQCI-----gr...............................
FBpp0162485  RSVNLClramT-NkyhvsrrdlpqKGESCDLAFDVFDCISD---qit..............................
FBpp0172397  PDYSLCrl..SDEqrsq.......ASSKCAWMYDEYLCWER---lng..............................
FBpp0164727  PAINGC....NAHarrs.......ARTALDWCYGAFVCVLR---t................................
FBpp0168448  EMIN--....---...........--------------------afdhchgksee......................
FBpp0169132  EAAGKC....NAK...........MD------------------efkd.............................
FBpp0172943  KSLNSCad..YAKt..........R-------------------tkqfewlhakdncdyypatllacimeqvyqncp
FBpp0168471  ------....---...........--------------------vvphivrsfdtcrkni.................
FBpp0159631  LVVEYC....NDRerrl.......QQKPAQWAYAAYKC------a................................


Statistics on alignment.   Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

You may enter many sequences at once using
FASTA format:

Upload a multiple sequence FASTA file:




Model: 0046072 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Strigamia maritima 22
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Heliconius numata
NoYes   NCBI 2017_08 genome
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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