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Home > SCOP hierarchy > Translation proteins SH3-like domain > Alignments

Translation proteins SH3-like domain alignments

These alignments are sequences aligned to the 0046770 model.

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The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                        10        20        30        40        50  
                                                         |         |         |         |         |  
d1ffkn_ ........................................PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRF
d1ffkq_ skqpdkqrksqrraplherhkqvratlsadlreeygqrnv-------------------------------RVNAGDTVEVLRG--------
d2zjrr1 .............................psagshhndkl-------------------------------HFKKGDTVIVLSG--------


              60        70        80        90                                                      
               |         |         |         |                                                      
d1ffkn_ HPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQ-e................................................
d1ffkq_ --DFAGEEGEVINVDLDKAVIHVEDVTLEK-------------tdgeevprpldtsnvrvtdldledekrearleseddsa...........
d2zjrr1 --KHKGQTGKVLLALPRDQKVVVEG------------------vnvitknvkpsmtnpqggqeqrelalhaskvalvdpetgkatrvrkqiv


                      
                      
d1ffkn_ ..............
d1ffkq_ ..............
d2zjrr1 dgkkvrvavasgkt


Statistics on alignment.	Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

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Add your sequences to the alignment:

Members of the same:	including
Include all superfamily members:	, or just those assigned by the selected model:
Initial T99 seed sequence:	NoYes

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Model: 0046770 (list models)

Initial SAMT99 seed:
Alignment:

Display Options:

Output in FASTA-like format:	NoYes
Output column indices:	NoYes
Sequence index (number) on each line:	NoYes

Max number of insertions shown:	(0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than:	residues

Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.

Select to display	Genome
NoYes	Slackia heliotrinireducens DSM 20476
NoYes	Deinococcus gobiensis I-0
NoYes	Deinococcus deserti VCD115
NoYes	Deinococcus maricopensis DSM 21211
NoYes	Deinococcus geothermalis DSM 11300
NoYes	Deinococcus proteolyticus MRP
NoYes	Deinococcus radiodurans R1
NoYes	Oceanithermus profundus DSM 14977
NoYes	Marinithermus hydrothermalis DSM 14884
NoYes	Meiothermus silvanus DSM 9946
NoYes	Meiothermus ruber DSM 1279
NoYes	Thermus sp. CCB_US3_UF1
NoYes	Thermus scotoductus SA-01
NoYes	Thermus thermophilus HB27
NoYes	Selenomonas sputigena ATCC 35185
NoYes	Clostridium thermocellum ATCC 27405
NoYes	Pelotomaculum thermopropionicum SI
NoYes	Desulfotomaculum acetoxidans DSM 771
NoYes	Desulfotomaculum kuznetsovii DSM 6115
NoYes	Desulfotomaculum carboxydivorans CO-1-SRB
NoYes	Thermosediminibacter oceani DSM 16646
NoYes	Caldicellulosiruptor obsidiansis OB47
NoYes	Caldicellulosiruptor kronotskyensis 2002
NoYes	Caldicellulosiruptor hydrothermalis 108
NoYes	Caldicellulosiruptor owensensis OL
NoYes	Caldicellulosiruptor lactoaceticus 6A
NoYes	Caldicellulosiruptor kristjanssonii 177R1B
NoYes	Caldicellulosiruptor saccharolyticus DSM 8903
NoYes	Caldicellulosiruptor bescii DSM 6725
NoYes	Carboxydothermus hydrogenoformans Z-2901
NoYes	Ammonifex degensii KC4
NoYes	Paenibacillus mucilaginosus 3016
NoYes	Anaerobaculum mobile DSM 13181
NoYes	Desulfurobacterium thermolithotrophum DSM 11699
NoYes	Dictyoglomus turgidum DSM 6724
NoYes	Dictyoglomus thermophilum H-6-12
NoYes	Thermodesulfovibrio yellowstonii DSM 11347
NoYes	Acidithiobacillus ferrivorans SS3
NoYes	Acidithiobacillus caldus SM-1
NoYes	Acidithiobacillus ferrooxidans ATCC 53993
NoYes	Dechloromonas aromatica RCB
NoYes	Thauera sp. MZ1T
NoYes	Azoarcus sp. KH32C
NoYes	Azoarcus sp. BH72
NoYes	Aromatoleum aromaticum EbN1
NoYes	Dechlorosoma suillum PS
NoYes	Pseudogulbenkiania sp. NH8B
NoYes	Laribacter hongkongensis HLHK9
NoYes	Chromobacterium violaceum ATCC 12472
NoYes	Thiomonas arsenitoxydans
NoYes	Thiomonas intermedia K12
NoYes	Polaromonas sp. JS666
NoYes	Polaromonas naphthalenivorans CJ2
NoYes	Rhodoferax ferrireducens T118
NoYes	Acidovorax ebreus TPSY
NoYes	Acidovorax sp. KKS102
NoYes	Acidovorax sp. JS42
NoYes	Acidovorax citrulli AAC00-1
NoYes	Acidovorax avenae subsp. avenae ATCC 19860
NoYes	Comamonas testosteroni CNB-2
NoYes	Herminiimonas arsenicoxydans
NoYes	Collimonas fungivorans Ter331
NoYes	Janthinobacterium sp. Marseille
NoYes	Herbaspirillum seropedicae SmR1
NoYes	Taylorella asinigenitalis MCE3
NoYes	Taylorella equigenitalis MCE9
NoYes	Bordetella petrii DSM 12804
NoYes	Bordetella avium 197N
NoYes	Bordetella pertussis Tohama I
NoYes	Bordetella parapertussis 12822
NoYes	Bordetella bronchiseptica RB50
NoYes	Thiobacillus denitrificans ATCC 25259
NoYes	Sideroxydans lithotrophicus ES-1
NoYes	Gallionella capsiferriformans ES-2
NoYes	Methylotenera versatilis 301
NoYes	Methylotenera mobilis JLW8
NoYes	Methylovorus sp. MP688
NoYes	Methylovorus glucosetrophus SIP3-4
NoYes	Methylobacillus flagellatus KT
NoYes	Sphingopyxis alaskensis RB2256
NoYes	Saccharophagus degradans 2-40
NoYes	Teredinibacter turnerae T7901
NoYes	Cellvibrio japonicus Ueda107
NoYes	Aggregatibacter aphrophilus NJ8700
NoYes	Aggregatibacter actinomycetemcomitans D7S-1
NoYes	Haemophilus somnus 129PT
NoYes	Gallibacterium anatis UMN179
NoYes	Pasteurella multocida subsp. multocida str. 3480
NoYes	Haemophilus parasuis SH0165
NoYes	Haemophilus ducreyi 35000HP
NoYes	Haemophilus parainfluenzae T3T1
NoYes	Haemophilus influenzae PittEE
NoYes	Actinobacillus succinogenes 130Z
NoYes	Actinobacillus pleuropneumoniae serovar 5b str. L20
NoYes	Oceanimonas sp. GK1
NoYes	Tolumonas auensis DSM 9187
NoYes	Aeromonas veronii B565
NoYes	Aeromonas salmonicida subsp. salmonicida A449
NoYes	Aeromonas hydrophila subsp. hydrophila ATCC 7966
NoYes	Aliivibrio salmonicida LFI1238
NoYes	Vibrio fischeri MJ11
NoYes	Vibrio sp. Ex25
NoYes	Vibrio harveyi ATCC BAA-1116
NoYes	Vibrio parahaemolyticus RIMD 2210633
NoYes	Vibrio splendidus LGP32
NoYes	Vibrio anguillarum 775
NoYes	Vibrio furnissii NCTC 11218
NoYes	Vibrio vulnificus MO6-24/O
NoYes	Vibrio cholerae O395
NoYes	Photobacterium profundum SS9
NoYes	Psychromonas ingrahamii 37
NoYes	Psychromonas sp. CNPT3
NoYes	Idiomarina loihiensis L2TR
NoYes	Ferrimonas balearica DSM 9799
NoYes	Shewanella piezotolerans WP3
NoYes	Shewanella loihica PV-4
NoYes	Shewanella halifaxensis HAW-EB4
NoYes	Shewanella sediminis HAW-EB3
NoYes	Shewanella denitrificans OS217
NoYes	Shewanella pealeana ATCC 700345
NoYes	Shewanella oneidensis MR-1
NoYes	Shewanella baltica OS185
NoYes	Shewanella woodyi ATCC 51908
NoYes	Shewanella sp. MR-4
NoYes	Shewanella amazonensis SB2B
NoYes	Shewanella violacea DSS12
NoYes	Shewanella frigidimarina NCIMB 400
NoYes	Shewanella putrefaciens CN-32
NoYes	Colwellia psychrerythraea 34H
NoYes	Pseudoalteromonas sp. SM9913
NoYes	Pseudoalteromonas atlantica T6c
NoYes	Pseudoalteromonas haloplanktis TAC125
NoYes	Glaciecola sp. 4H-3-7+YE-5
NoYes	Glaciecola nitratireducens FR1064
NoYes	Marinobacter adhaerens HP15
NoYes	Marinobacter sp. BSs20148
NoYes	Marinobacter hydrocarbonoclasticus ATCC 49840
NoYes	Marinobacter aquaeolei VT8
NoYes	Alteromonas sp. SN2
NoYes	Alteromonas macleodii str. 'Deep ecotype'
NoYes	Kangiella koreensis DSM 16069
NoYes	Hahella chejuensis KCTC 2396
NoYes	Alcanivorax borkumensis SK2
NoYes	Marinomonas posidonica IVIA-Po-181
NoYes	Marinomonas sp. MWYL1
NoYes	Marinomonas mediterranea MMB-1
NoYes	Chromohalobacter salexigens DSM 3043
NoYes	Halomonas elongata DSM 2581
NoYes	Methylomicrobium alcaliphilum
NoYes	Methylomonas methanica MC09
NoYes	Halothiobacillus neapolitanus c2
NoYes	Thioalkalivibrio sulfidophilus HL-EbGr7
NoYes	Thiocystis violascens DSM 198
NoYes	Coxiella burnetii Dugway 5J108-111
NoYes	Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
NoYes	gamma proteobacterium HdN1
NoYes	Photorhabdus asymbiotica
NoYes	Photorhabdus luminescens subsp. laumondii TTO1
NoYes	Xenorhabdus bovienii SS-2004
NoYes	Xenorhabdus nematophila ATCC 19061
NoYes	Providencia stuartii MRSN 2154
NoYes	Proteus mirabilis HI4320
NoYes	Edwardsiella ictaluri 93-146
NoYes	Edwardsiella tarda EIB202
NoYes	Rahnella sp. Y9602
NoYes	Rahnella aquatilis CIP 78.65 = ATCC 33071
NoYes	Yersinia pseudotuberculosis IP 31758
NoYes	Yersinia pestis Pestoides F
NoYes	Yersinia enterocolitica subsp. enterocolitica 8081
NoYes	Serratia sp. AS12
NoYes	Serratia symbiotica str. 'Cinara cedri'
NoYes	Serratia sp. ATCC 39006
NoYes	Serratia plymuthica AS9
NoYes	Serratia proteamaculans 568
NoYes	Dickeya dadantii Ech703
NoYes	Dickeya zeae Ech1591
NoYes	Pectobacterium wasabiae WPP163
NoYes	Pectobacterium sp. SCC3193
NoYes	Pectobacterium atrosepticum SCRI1043
NoYes	Pectobacterium carotovorum subsp. carotovorum PC1
NoYes	Sodalis glossinidius str. 'morsitans'
NoYes	Halyomorpha halys symbiont
NoYes	Pantoea sp. At-9b
NoYes	Pantoea vagans C9-1
NoYes	Pantoea ananatis LMG 20103
NoYes	Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
NoYes	Erwinia tasmaniensis Et1/99
NoYes	Erwinia sp. Ejp617
NoYes	Erwinia billingiae Eb661
NoYes	Erwinia pyrifoliae Ep1/96
NoYes	Erwinia amylovora ATCC 49946
NoYes	Escherichia blattae DSM 4481
NoYes	Candidatus Moranella endobia PCIT
NoYes	Cronobacter turicensis z3032
NoYes	Cronobacter sakazakii ES15
NoYes	secondary endosymbiont of Ctenarytaina eucalypti
NoYes	Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
NoYes	Candidatus Blochmannia floridanus
NoYes	Enterobacteriaceae bacterium strain FGI 57
NoYes	Shigella sonnei Ss046
NoYes	Shigella flexneri 5 str. 8401
NoYes	Shigella dysenteriae Sd197
NoYes	Shigella boydii CDC 3083-94
NoYes	Salmonella bongori NCTC 12419
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
NoYes	Klebsiella oxytoca E718
NoYes	Klebsiella variicola At-22
NoYes	Klebsiella pneumoniae NTUH-K2044
NoYes	Enterobacter aerogenes KCTC 2190
NoYes	Escherichia fergusonii ATCC 35469
NoYes	Escherichia coli 'BL21-Gold(DE3)pLysS AG'
NoYes	Enterobacter sp. R4-368
NoYes	Enterobacter sp. 638
NoYes	Enterobacter asburiae LF7a
NoYes	Enterobacter cloacae subsp. dissolvens SDM
NoYes	Citrobacter rodentium ICC168
NoYes	Citrobacter koseri ATCC BAA-895
NoYes	Azotobacter vinelandii DJ
NoYes	Pseudomonas sp. TKP
NoYes	Pseudomonas sp. UW4
NoYes	Pseudomonas brassicacearum subsp. brassicacearum NFM421
NoYes	Pseudomonas entomophila L48
NoYes	Pseudomonas syringae pv. tomato str. DC3000
NoYes	Pseudomonas stutzeri A1501
NoYes	Pseudomonas fulva 12-X
NoYes	Pseudomonas putida F1
NoYes	Pseudomonas protegens Pf-5
NoYes	Pseudomonas fluorescens SBW25
NoYes	Pseudomonas mendocina ymp
NoYes	Pseudomonas aeruginosa UCBPP-PA14
NoYes	Pseudomonas sp. VLB120
NoYes	Methylophaga sp. JAM1
NoYes	Cycloclasticus sp. P1
NoYes	Francisella noatunensis subsp. orientalis str. Toba 04
NoYes	Francisella sp. TX077308
NoYes	Francisella philomiragia subsp. philomiragia ATCC 25017
NoYes	Francisella cf. novicida 3523
NoYes	Francisella novicida U112
NoYes	halophilic archaeon DL31
NoYes	Methanosaeta thermophila PT
NoYes	Salinarchaeum sp. Harcht-Bsk1
NoYes	Halopiger xanaduensis SH-6
NoYes	Haloterrigena turkmenica DSM 5511
NoYes	Natrinema sp. J7-2
NoYes	Natrialba magadii ATCC 43099
NoYes	Halorubrum lacusprofundi ATCC 49239
NoYes	Haloquadratum walsbyi DSM 16790
NoYes	Halogeometricum borinquense DSM 11551
NoYes	Haloferax mediterranei ATCC 33500
NoYes	Haloferax volcanii DS2
NoYes	Halomicrobium mukohataei DSM 12286
NoYes	Halorhabdus utahensis DSM 12940
NoYes	Natronomonas pharaonis DSM 2160
NoYes	Haloarcula hispanica ATCC 33960
NoYes	Haloarcula marismortui ATCC 43049
NoYes	Halalkalicoccus jeotgali B3
NoYes	Halobacterium salinarum R1
NoYes	Halobacterium sp. NRC-1
NoYes	Deinococcus peraridilitoris DSM 19664
NoYes	Thermus oshimai JL-2
NoYes	Thermus thermophilus JL-18
NoYes	Thermus thermophilus SG0.5JP17-16
NoYes	Thermus thermophilus HB8
NoYes	Clostridium thermocellum DSM 1313
NoYes	Thermobacillus composti KWC4
NoYes	Paenibacillus sp. Y412MC10
NoYes	Paenibacillus mucilaginosus KNP414
NoYes	Paenibacillus mucilaginosus K02
NoYes	Paenibacillus larvae subsp. larvae DSM 25430
NoYes	Acidithiobacillus ferrooxidans ATCC 23270
NoYes	Taylorella asinigenitalis 14/45
NoYes	Taylorella equigenitalis 14/56
NoYes	Taylorella equigenitalis ATCC 35865
NoYes	Bordetella pertussis CS
NoYes	Bordetella parapertussis 18323
NoYes	Bordetella parapertussis Bpp5
NoYes	Bordetella bronchiseptica MO149
NoYes	Bordetella bronchiseptica 253
NoYes	Sulfuricella denitrificans skB26
NoYes	Simiduia agarivorans SA1 = DSM 21679
NoYes	Mannheimia succiniciproducens MBEL55E
NoYes	Bibersteinia trehalosi USDA-ARS-USMARC-192
NoYes	Aggregatibacter actinomycetemcomitans ANH9381
NoYes	Aggregatibacter actinomycetemcomitans D11S-1
NoYes	Haemophilus somnus 2336
NoYes	Mannheimia haemolytica USMARC_2286
NoYes	Mannheimia haemolytica M42548
NoYes	Mannheimia haemolytica D174
NoYes	Mannheimia haemolytica D171
NoYes	Mannheimia haemolytica D153
NoYes	Mannheimia haemolytica USDA-ARS-USMARC-183
NoYes	Mannheimia haemolytica USDA-ARS-USMARC-185
NoYes	Pasteurella multocida 36950
NoYes	Pasteurella multocida subsp. multocida str. HN06
NoYes	Pasteurella multocida subsp. multocida str. Pm70
NoYes	Haemophilus parasuis ZJ0906
NoYes	Haemophilus influenzae KR494
NoYes	Haemophilus influenzae F3047
NoYes	Haemophilus influenzae F3031
NoYes	Haemophilus influenzae 10810
NoYes	Haemophilus influenzae PittGG
NoYes	Haemophilus influenzae 86-028NP
NoYes	Haemophilus influenzae R2866
NoYes	Haemophilus influenzae R2846
NoYes	Haemophilus influenzae Rd KW20
NoYes	Actinobacillus suis H91-0380
NoYes	Actinobacillus pleuropneumoniae serovar 3 str. JL03
NoYes	Actinobacillus pleuropneumoniae serovar 7 str. AP76
NoYes	Aeromonas hydrophila ML09-119
NoYes	Vibrio fischeri ES114
NoYes	Vibrio sp. EJY3
NoYes	Vibrio parahaemolyticus BB22OP
NoYes	Vibrio alginolyticus NBRC 15630 = ATCC 17749
NoYes	Vibrio anguillarum Listonella anguillarum M3
NoYes	Vibrio nigripulchritudo VibrioScope
NoYes	Vibrio vulnificus CMCP6
NoYes	Vibrio vulnificus YJ016
NoYes	Vibrio cholerae LMA3984-4
NoYes	Vibrio cholerae M66-2
NoYes	Vibrio cholerae O395
NoYes	Vibrio cholerae IEC224
NoYes	Vibrio cholerae O1 str. 2010EL-1786
NoYes	Vibrio cholerae MJ-1236
NoYes	Vibrio cholerae O1 biovar El Tor str. N16961
NoYes	Idiomarina loihiensis GSL 199
NoYes	Shewanella sp. W3-18-1
NoYes	Shewanella sp. ANA-3
NoYes	Shewanella baltica BA175
NoYes	Shewanella baltica OS678
NoYes	Shewanella baltica OS117
NoYes	Shewanella baltica OS223
NoYes	Shewanella baltica OS195
NoYes	Shewanella baltica OS155
NoYes	Shewanella sp. MR-7
NoYes	Shewanella putrefaciens 200
NoYes	Glaciecola psychrophila 170
NoYes	Alteromonas macleodii str. 'Ionian Sea UM4b'
NoYes	Alteromonas macleodii str. 'Ionian Sea UM7'
NoYes	Alteromonas macleodii str. 'Ionian Sea U8'
NoYes	Alteromonas macleodii str. 'Ionian Sea U7'
NoYes	Alteromonas macleodii str. 'Ionian Sea U4'
NoYes	Alteromonas macleodii str. 'Aegean Sea MED64'
NoYes	Alteromonas macleodii str. 'English Channel 615'
NoYes	Alteromonas macleodii AltDE1
NoYes	Alteromonas macleodii str. 'English Channel 673'
NoYes	Alteromonas macleodii str. 'Balearic Sea AD45'
NoYes	Alteromonas macleodii str. 'Black Sea 11'
NoYes	Alteromonas macleodii ATCC 27126
NoYes	Alcanivorax dieselolei B5
NoYes	Thalassolituus oleivorans MIL-1
NoYes	Thioalkalivibrio nitratireducens DSM 14787
NoYes	Coxiella burnetii CbuK_Q154
NoYes	Coxiella burnetii CbuG_Q212
NoYes	Coxiella burnetii RSA 331
NoYes	Coxiella burnetii RSA 493
NoYes	Proteus mirabilis BB2000
NoYes	Morganella morganii subsp. morganii KT
NoYes	Edwardsiella tarda C07-087
NoYes	Edwardsiella tarda FL6-60
NoYes	Rahnella aquatilis HX2
NoYes	Yersinia pseudotuberculosis PB1/+
NoYes	Yersinia pseudotuberculosis YPIII
NoYes	Yersinia pseudotuberculosis IP 32953
NoYes	Yersinia pestis biovar Microtus str. 91001
NoYes	Yersinia pestis A1122
NoYes	Yersinia pestis Z176003
NoYes	Yersinia pestis D182038
NoYes	Yersinia pestis D106004
NoYes	Yersinia pestis biovar Medievalis str. Harbin 35
NoYes	Yersinia pestis Nepal516
NoYes	Yersinia pestis Antiqua
NoYes	Yersinia pestis Angola
NoYes	Yersinia pestis CO92
NoYes	Yersinia pestis KIM10+
NoYes	Yersinia enterocolitica subsp. palearctica 105.5R(r)
NoYes	Yersinia enterocolitica subsp. palearctica Y11
NoYes	Serratia sp. AS13
NoYes	Serratia plymuthica S13
NoYes	Serratia plymuthica 4Rx13
NoYes	Serratia marcescens FGI94
NoYes	Serratia marcescens WW4
NoYes	Serratia liquefaciens ATCC 27592
NoYes	Dickeya dadantii Ech586
NoYes	Dickeya dadantii 3937
NoYes	Pectobacterium carotovorum subsp. carotovorum PCC21
NoYes	Pantoea ananatis LMG 5342
NoYes	Pantoea ananatis PA13
NoYes	Pantoea ananatis AJ13355
NoYes	Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)
NoYes	Buchnera aphidicola str. Bp (Baizongia pistaciae)
NoYes	Buchnera aphidicola str. Ua (Uroleucon ambrosiae)
NoYes	Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. 5A (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. APS (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. Sg (Schizaphis graminum)
NoYes	Erwinia pyrifoliae DSM 12163
NoYes	Erwinia amylovora CFBP1430
NoYes	Candidatus Moranella endobia PCVAL
NoYes	Cronobacter sakazakii CMCC 45402
NoYes	Cronobacter sakazakii SP291
NoYes	Cronobacter sakazakii ATCC BAA-894
NoYes	secondary endosymbiont of Heteropsylla cubana Thao2000
NoYes	Candidatus Blochmannia chromaiodes str. 640
NoYes	Candidatus Blochmannia vafer str. BVAF
NoYes	Candidatus Blochmannia pennsylvanicus str. BPEN
NoYes	Raoultella ornithinolytica B6
NoYes	Shigella sonnei 53G
NoYes	Shigella flexneri 2002017
NoYes	Shigella flexneri 2a str. 2457T
NoYes	Shigella flexneri 2a str. 301
NoYes	Shigella dysenteriae 1617
NoYes	Shigella boydii Sb227
NoYes	Salmonella bongori N268-08
NoYes	Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980
NoYes	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
NoYes	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992
NoYes	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
NoYes	Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050
NoYes	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
NoYes	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
NoYes	Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1
NoYes	Salmonella enterica subsp. enterica serovar Newport str. SL254
NoYes	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. U288
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 798
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
NoYes	Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. CT18
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
NoYes	Salmonella enterica serovar Bovismorbificans genomics
NoYes	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189
NoYes	Salmonella enterica subsp. enterica serovar Agona str. 24249
NoYes	Salmonella enterica subsp. enterica serovar Agona str. SL483
NoYes	Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NoYes	Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. B182
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. 41578
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
NoYes	Salmonella enterica subsp. enterica serovar Pullorum str. S06004
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078
NoYes	Salmonella enterica subsp. enterica serovar Thompson str. RM6836
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
NoYes	Klebsiella oxytoca KCTC 1686
NoYes	Klebsiella pneumoniae JM45
NoYes	Klebsiella pneumoniae CG43
NoYes	Klebsiella pneumoniae KCTC 2242
NoYes	Klebsiella pneumoniae 342
NoYes	Klebsiella pneumoniae subsp. pneumoniae 1084
NoYes	Klebsiella pneumoniae subsp. pneumoniae HS11286
NoYes	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
NoYes	Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
NoYes	Enterobacter aerogenes EA1509E
NoYes	Escherichia coli E24377A
NoYes	Escherichia coli E. coli PMV-1
NoYes	Escherichia coli JJ1886
NoYes	Escherichia coli LY180
NoYes	Escherichia coli APEC O78
NoYes	Escherichia coli O7:K1 str. CE10
NoYes	Escherichia coli O104:H4 str. 2009EL-2050
NoYes	Escherichia coli O104:H4 str. 2009EL-2071
NoYes	Escherichia coli O104:H4 str. 2011C-3493
NoYes	Escherichia coli NA114
NoYes	Escherichia coli P12b
NoYes	Escherichia coli str. 'clone D i2'
NoYes	Escherichia coli str. 'clone D i14'
NoYes	Escherichia coli UM146
NoYes	Escherichia coli 042
NoYes	Escherichia coli Xuzhou21
NoYes	Escherichia coli IHE3034
NoYes	Escherichia coli UMNK88
NoYes	Escherichia coli O83:H1 str. NRG 857C
NoYes	Escherichia coli ABU 83972
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli LF82
NoYes	Escherichia coli ED1a
NoYes	Escherichia coli IAI39
NoYes	Escherichia coli UMN026
NoYes	Escherichia coli 55989
NoYes	Escherichia coli S88
NoYes	Escherichia coli IAI1
NoYes	Escherichia coli W
NoYes	Escherichia coli W
NoYes	Escherichia coli DH1
NoYes	Escherichia coli DH1
NoYes	Escherichia coli ATCC 8739
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli SMS-3-5
NoYes	Escherichia coli SE15
NoYes	Escherichia coli SE11
NoYes	Escherichia coli APEC O1
NoYes	Escherichia coli O103:H2 str. 12009
NoYes	Escherichia coli UTI89
NoYes	Escherichia coli 536
NoYes	Escherichia coli HS
NoYes	Escherichia coli ETEC H10407
NoYes	Escherichia coli O55:H7 str. RM12579
NoYes	Escherichia coli O55:H7 str. CB9615
NoYes	Escherichia coli O26:H11 str. 11368
NoYes	Escherichia coli CFT073
NoYes	Escherichia coli O111:H- str. 11128
NoYes	Escherichia coli O127:H6 str. E2348/69
NoYes	Escherichia coli O157:H7 str. TW14359
NoYes	Escherichia coli O157:H7 str. EC4115
NoYes	Escherichia coli O157:H7 str. Sakai
NoYes	Escherichia coli O157:H7 str. EDL933
NoYes	Escherichia coli str. K-12 substr. MDS42
NoYes	Escherichia coli BW2952
NoYes	Escherichia coli str. K-12 substr. MG1655
NoYes	Escherichia coli str. K-12 substr. W3110
NoYes	Escherichia coli str. K-12 substr. DH10B
NoYes	Escherichia coli B str. REL606
NoYes	Enterobacter cloacae SCF1
NoYes	Enterobacter cloacae EcWSU1
NoYes	Enterobacter cloacae subsp. cloacae ENHKU01
NoYes	Enterobacter cloacae subsp. cloacae NCTC 9394
NoYes	Enterobacter cloacae subsp. cloacae ATCC 13047
NoYes	Azotobacter vinelandii CA6
NoYes	Azotobacter vinelandii CA
NoYes	Pseudomonas denitrificans ATCC 13867
NoYes	Pseudomonas syringae pv. phaseolicola 1448A
NoYes	Pseudomonas syringae pv. syringae B728a
NoYes	Pseudomonas stutzeri CCUG 29243
NoYes	Pseudomonas stutzeri DSM 10701
NoYes	Pseudomonas stutzeri DSM 4166
NoYes	Pseudomonas stutzeri RCH2
NoYes	Pseudomonas stutzeri ATCC 17588 = LMG 11199
NoYes	Pseudomonas monteilii SB3101
NoYes	Pseudomonas monteilii SB3078
NoYes	Pseudomonas putida H8234
NoYes	Pseudomonas putida HB3267
NoYes	Pseudomonas putida NBRC 14164
NoYes	Pseudomonas putida DOT-T1E
NoYes	Pseudomonas putida S16
NoYes	Pseudomonas putida BIRD-1
NoYes	Pseudomonas putida W619
NoYes	Pseudomonas putida ND6
NoYes	Pseudomonas putida KT2440
NoYes	Pseudomonas putida GB-1
NoYes	Pseudomonas protegens CHA0
NoYes	Pseudomonas poae RE*1-1-14
NoYes	Pseudomonas fluorescens F113
NoYes	Pseudomonas fluorescens A506
NoYes	Pseudomonas fluorescens R124
NoYes	Pseudomonas fluorescens Pf0-1
NoYes	Pseudomonas resinovorans NBRC 106553
NoYes	Pseudomonas mendocina NK-01
NoYes	Pseudomonas aeruginosa SCV20265
NoYes	Pseudomonas aeruginosa MTB-1
NoYes	Pseudomonas aeruginosa LES431
NoYes	Pseudomonas aeruginosa RP73
NoYes	Pseudomonas aeruginosa B136-33
NoYes	Pseudomonas aeruginosa PA1R
NoYes	Pseudomonas aeruginosa PA1
NoYes	Pseudomonas aeruginosa DK2
NoYes	Pseudomonas aeruginosa NCGM2.S1
NoYes	Pseudomonas aeruginosa M18
NoYes	Pseudomonas aeruginosa LESB58
NoYes	Pseudomonas aeruginosa PA7
NoYes	Pseudomonas aeruginosa PAO1
NoYes	Methylophaga sp. JAM7
NoYes	Cycloclasticus zancles 7-ME
NoYes	Francisella noatunensis subsp. orientalis LADL--07-285A
NoYes	Francisella tularensis subsp. mediasiatica FSC147
NoYes	Francisella tularensis subsp. holarctica F92
NoYes	Francisella tularensis subsp. holarctica FTNF002-00
NoYes	Francisella tularensis subsp. holarctica OSU18
NoYes	Francisella tularensis subsp. holarctica LVS
NoYes	Francisella tularensis subsp. holarctica FSC200
NoYes	Francisella cf. novicida Fx1
NoYes	Halovivax ruber XH-70
NoYes	Natrinema pellirubrum DSM 15624
NoYes	Natronococcus occultus SP4
NoYes	Natronobacterium gregoryi SP2
NoYes	Haloquadratum walsbyi C23
NoYes	Halorhabdus tiamatea SARL4B
NoYes	Natronomonas moolapensis 8.8.11
NoYes	Haloarcula hispanica N601
NoYes	Vibrio campbellii ATCC BAA-1116
NoYes	1_050719N (meta-genome)
NoYes	3_050719R (meta-genome)
NoYes	4_050719Q (meta-genome)
NoYes	4_Deep_abyss (meta-genome)
NoYes	6_Upper_euphotic (meta-genome)
NoYes	7_Oxygen_minimum_layer (meta-genome)
NoYes	Atta cephalotes fungus garden (ACEF) (meta-genome)
NoYes	Bath Hot Springs, planktonic community (meta-genome)
NoYes	Combined (meta-genome)
NoYes	Cyphomyrmex longiscapus fungus garden (meta-genome)
NoYes	Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)
NoYes	Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)
NoYes	Dump top (Dump top) (meta-genome)
NoYes	Endophytic microbiome from Rice (meta-genome)
NoYes	Freshwater propionate enrichment of Brocadia fulgida (meta-genome)
NoYes	Fungus garden combined (combined) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)
NoYes	NCBI 2017_08 genome
NoYes	simHC - Simulated High Complexity Metagenome (meta-genome)
NoYes	Sludge/Australian, Phrap Assembly (meta-genome)
NoYes	Sludge/US, Jazz Assembly (meta-genome)
NoYes	Sludge/US, Phrap Assembly (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)
NoYes	STRING v9.0.5 (STRING)
NoYes	Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes	Uniprot 2018_03 genome
NoYes	Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)
NoYes	Global Ocean Sampling Expedition (GOS)
NoYes	PDB chains (SCOP 1.75) (PDB)
NoYes	Protein Data Bank (all PDB sequenc)
NoYes	SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes	TargetDB (Targets)
NoYes	The Salmonella enterica Pan-genome (meta-genome)
NoYes	ALL (only advised for small superfamilies)

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Translation proteins SH3-like domain alignments