Select to display Genome No Anopheles gambiae 55 (pseudogenes) - African malaria mosquitoNo Canis familiaris 58 (pseudogenes) - DogNo Danio rerio 58 (pseudogenes) - ZebrafishNo Gallus gallus 58 (pseudogene) - ChickenNo Homo sapiens 58 (pseudogenes) - HumanNo Pan troglodytes 58 (pseudogenes) - ChimpanzeeNo Homo sapiens 76_38 - HumanNo Pan troglodytes 76_2.1.4 - ChimpanzeeNo Gorilla gorilla 76_3.1 - Western gorillaNo Pongo abelii 76_2 - Sumatran orangutanNo Tarsius syrichta 76_1 No Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbonNo Papio anubis 76 - Olive baboonNo Macaca mulatta 76_1 - Rhesus monkeyNo Callithrix jacchus 76_3.2.1 - White-tufted-ear marmosetNo Otolemur garnettii 76_3 - Small-eared galagoNo Microcebus murinus 76_1 - Gray mouse lemurNo Physcomitrella patens subsp. patens 22 No Rattus norvegicus 76_5.0 - Norway ratNo Mus musculus 76_38 - House mouseNo Dipodomys ordii 76_1 - Ord's kangaroo ratNo Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrelNo Heterocephalus glaber v1.7-2 - Naked mole-ratNo Cavia porcellus 76_3 - Domestic guinea pigNo Oryctolagus cuniculus 76_2 - RabbitNo Ochotona princeps 76 - American pikaNo Tupaia belangeri 76 - Northern tree shrewNo Sus scrofa 76_10.2 - PigNo Bos taurus 76_3.1 - CattleNo Ovis aries 76_3.1 - SheepNo Vicugna pacos 76_1 - AlpacaNo Tursiops truncatus 76_1 - Bottlenose dolphinNo Mustela putorius furo 76_1.0 - Domestic ferretNo Ailuropoda melanoleuca 76_1 - Giant pandaNo Canis familiaris 76_3.1 - DogNo Felis catus 76_6.2 - Domestic catNo Equus caballus 76_2 - HorseNo Myotis lucifugus 76_2.0 - Little brown batNo Pteropus vampyrus 76_1 - Large flying foxNo Sorex araneus 76_1 - European shrewNo Erinaceus europaeus 76 - Western European hedgehogNo Procavia capensis 76_1 - Cape rock hyraxNo Loxodonta africana 76_3 - African savanna elephantNo Echinops telfairi 76 - Small Madagascar hedgehogNo Dasypus novemcinctus 76_2 - Nine-banded armadilloNo Choloepus hoffmanni 76_1 - Hoffmann's two-fingered slothNo Macropus eugenii 76_1.0 - Tammar wallabyNo Sarcophilus harrisii 76_7.0 - Tasmanian devilNo Monodelphis domestica 76_5 - Gray short-tailed opossumNo Ornithorhynchus anatinus 76_5 - PlatypusNo Saccoglossus kowalevskii v3.0 No Petromyzon marinus 76_7.0 - Sea lampreyNo Meleagris gallopavo 76_2 - TurkeyNo Gallus gallus 76_4 - ChickenNo Anas platyrhynchos 76_1.0 - MallardNo Taeniopygia guttata 76_3.2.4 - Zebra finchNo Ficedula albicollis 76_1.0 - Collared flycatcherNo Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtleNo Anolis carolinensis 76_2.0 - Green anoleNo Xenopus laevis No Xenopus tropicalis 76_4.2 - Tropical clawed frogNo Latimeria chalumnae 76_1 - CoelacanthNo Lepisosteus oculatus 76 - Spotted garNo Gadus morhua 76_1 - Atlantic codNo Tetraodon nigroviridis 76_8 - Spotted green pufferfishNo Takifugu rubripes 76_4 - TorafuguNo Gasterosteus aculeatus 76_1 - Three-spined sticklebackNo Oryzias latipes 76_1 - Japanese medakaNo Xiphophorus maculatus 76_4.4.2 - Southern platyfishNo Poecilia formosa 76 - Amazon mollyNo Oreochromis niloticus 76_1.0 - Nile tilapiaNo Astyanax mexicanus 76 - Mexican tetraNo Danio rerio 76_9 - ZebrafishNo Oikopleura dioica No Ciona savignyi 76_2.0 - Pacific transparent sea squirtNo Ciona intestinalis 76 - Vase tunicateNo Strongylocentrotus purpuratus v3.1 - Purple sea urchinNo Adineta vaga No Octopus bimaculoides 280 No Crassostrea gigas 22 - Pacific oysterNo Lottia gigantea No Helobdella robusta No Capitella sp. I No Danaus plexippus OGS1.0 - Monarch butterflyNo Heliconius melpomene No Bombyx mori No Nasonia vitripennis No Apis mellifera 38.2d - Honey beeNo Harpegnathos saltator v3.3 - Jerdon's jumping antNo Linepithema humile v1.1 - Argentine antNo Pogonomyrmex barbatus v1.2 - Red harvester antNo Solenopsis invicta v.2.2.3 - Red fire antNo Acromyrmex echinatior v3.8 - Panamanian leafcutter antNo Atta cephalotes v1.1 No Camponotus floridanus v3.3 - Florida carpenter antNo Lucilia cuprina - Australian sheep blowflyNo Drosophila grimshawi 1.3 No Drosophila willistoni 1.3 No Drosophila pseudoobscura 2.13 No Drosophila persimilis 1.3 No Drosophila suzukii No Drosophila yakuba 1.3 No Drosophila simulans 1.3 No Drosophila sechellia 1.3 No Drosophila melanogaster 76_5 - Fruit flyNo Drosophila erecta 1.3 No Drosophila ananassae 1.3 No Drosophila virilis 1.2 No Drosophila mojavensis 1.3 No Megaselia scalaris 22 No Aedes aegypti 55 - Yellow fever mosquitoNo Culex pipiens quinquefasciatus No Anopheles darlingi 22 - American malaria mosquitoNo Anopheles gambiae 49_3j - African malaria mosquitoYes Tribolium castaneum 3.0 - Red flour beetleNo Pediculus humanus corporis No Acyrthosiphon pisum No Rhodnius prolixus 22 No Daphnia pulex No Strigamia maritima 22 No Sarcoptes scabiei No Tetranychus urticae No Ixodes scapularis No Pristionchus pacificus No Meloidogyne incognita No Meloidogyne hapla No Onchocerca volvulus 22 No Brugia malayi WS250 - Agent of lymphatic filariasisNo Caenorhabditis japonica No Caenorhabditis brenneri No Caenorhabditis remanei No Caenorhabditis elegans 76_235 - RoundwormNo Caenorhabditis briggsae 2 No Trichinella spiralis 22 No Hymenolepis microstoma No Echinococcus multilocularis No Echinococcus granulosus No Taenia solium No Schistosoma mansoni No Mnemiopsis leidyi - Sea walnutNo Acropora digitifera v1.0No Nematostella vectensis 1.0 - Starlet sea anemoneNo Hydra vulgaris No Amphimedon queenslandica No Trichoplax adhaerens No Proterospongia sp. ATCC 50818 No Monosiga brevicollis No Capsaspora owczarzaki ATCC 30864 No Aspergillus niger 22 No Dictyostelium discoideum No Dictyostelium purpureum No Selaginella moellendorffii No Pinus taeda - Loblolly pineNo Picea abies - Norway spruceNo Eucalyptus grandis v201 - Rose gumNo Theobroma cacao B97-61/B2 v1 - CacaoNo Gossypium raimondii v221 No Citrus clementina v165 No Citrus sinensis v154 - Sweet orangeNo Thellungiella halophila v173 No Brassica rapa Chiifu-401 1.2 - Field mustardNo Capsella rubella v183 No Arabidopsis lyrata No Arabidopsis thaliana 10 - Thale cressNo Carica papaya No Medicago truncatula No Phaseolus vulgaris v186 - String beanNo Glycine max v109 - SoybeanNo Cucumis sativus v122 - CucumberNo Fragaria vesca No Malus domestica v196 - AppleNo Prunus persica v139 - PeachNo Linum usitatissimum v200 - FlaxNo Manihot esculenta v147 - CassavaNo Populus trichocarpa v156 - Black cottonwoodNo Vitis vinifera No Mimulus guttatus v140 - Spotted monkey flowerNo Solanum lycopersicum v.2.3 - TomatoNo Solanum tuberosum No Actinidia chinensis Hongyang No Aquilegia coerulea v195 No Triticum urartu 22 No Triticum aestivum 22 - Bread wheatNo Aegilops tauschii 22 No Brachypodium distachyon No Oryza barthii 22 - African wild riceNo Oryza meridionalis 22 No Oryza glumaepatula 22 No Oryza glaberrima - African riceNo Oryza punctata 22 No Oryza nivara 22 No Oryza brachyantha 22 - Malo sinaNo Oryza sativa ssp. japonica 5.0 - Japanese riceNo Oryza sativa v193 - RiceNo Phyllostachys heterocycla var. pubescens - MosochikuNo Panicum virgatum v202 - SwitchgrassNo Setaria italica v164 - Foxtail milletNo Zea mays subsp. mays No Zea mays v181 - MaizeNo Sorghum bicolor No Musa balbisiana - Balbis bananaNo Musa acuminata 22 - Wild Malaysian bananaNo Amborella trichopoda 22 No Physcomitrella patens No Coccomyxa subellipsoidea sp. C-169 v2 No Chlorella vulgaris No Volvox carteri f. nagariensis No Volvox carteri v199 No Chlamydomonas reinhardtii 4.0 No Ostreococcus sp. RCC809 No Ostreococcus tauri No Micromonas sp. RCC299 No Micromonas pusilla CCMP1545 v3.0 No Cyanidioschyzon merolae strain 10D 22 No Cyanidioschyzon merolae No Porphyridium purpureum 02_2012 No Thecamonas trahens ATCC 50062 No Bigelowiella natans CCMP2755 22 No Cyanophora paradoxa No Aureococcus anophagefferens No Albugo laibachii 22 No Pythium iwayamai DAOM BR242034 22 No Pythium arrhenomanes ATCC 12531 22 No Pythium ultimum v1.7-2 No Pythium aphanidermatum DAOM BR444 22 No Pythium irregulare DAOM BR486 22 No Pythium vexans DAOM BR484 22 No Phytophthora ramorum 1.1 - Sudden oak death agentNo Phytophthora sojae 1.1 No Phytophthora infestans T30-4 No Phytophthora capsici No Hyaloperonospora arabidopsidis 22 No Perkinsus marinus ATCC 50983 No Symbiodinium minutum clade B1 v1.2 No Guillardia theta CCMP2712 v1.0 No Emiliania huxleyi CCMP1516 No Leptolyngbya sp. PCC 7376 No Pseudanabaena sp. PCC 7367 No Acaryochloris marina MBIC11017No Synechocystis sp. PCC 6803No Thermosynechococcus sp. NK55 No Thermosynechococcus elongatus BP-1No Synechococcus sp. PCC 6312 No Microcoleus sp. PCC 7113 No Trichodesmium erythraeum IMS101No Cyanothece sp. PCC 8802No Halothece sp. PCC 7418 No Microcystis aeruginosa NIES-843No Gloeobacter violaceus PCC 7421No Rivularia sp. PCC 7116 No Calothrix sp. PCC 7507 No Anabaena variabilis ATCC 29413No Nostoc punctiforme PCC 73102No Nostoc sp. PCC 7120No Anabaena sp. 90 No Conexibacter woesei DSM 14684No Eggerthella lenta DSM 2243No Slackia heliotrinireducens DSM 20476No Modestobacter marinus No Geodermatophilus obscurus DSM 43160No Catenulispora acidiphila DSM 44928No Frankia symbiont of Datisca glomerataNo Frankia sp. EAN1pecNo Frankia alni ACN14aNo Thermobifida fusca YXNo Thermomonospora curvata DSM 43183No Streptosporangium roseum DSM 43021No Kitasatospora setae KM-6054No Streptomyces coelicolor A3(2)No Streptomyces sp. PAMC26508 No Streptomyces flavogriseus ATCC 33331No Streptomyces sp. SirexAA-ENo Streptomyces griseus subsp. griseus NBRC 13350No Streptomyces violaceusniger Tu 4113No Streptomyces avermitilis MA-4680No Streptomyces scabiei 87.22No Actinosynnema mirum DSM 43827No Saccharopolyspora erythraea NRRL 2338No Amycolatopsis mediterranei U32No Nocardioides sp. JS614No Microlunatus phosphovorus NM-1No Salinispora arenicola CNS-205No Micromonospora sp. L5No Micromonospora aurantiaca ATCC 27029No Actinoplanes sp. N902-109 No Actinoplanes sp. SE50/110No Actinoplanes missouriensis 431No Tsukamurella paurometabola DSM 20162No Gordonia sp. KTR9 No Rhodococcus jostii RHA1No Rhodococcus opacus B4No Rhodococcus erythropolis PR4No Mycobacterium gilvum PYR-GCKNo Xylanimonas cellulosilytica DSM 15894No Arthrobacter phenanthrenivorans Sphe3No Arthrobacter chlorophenolicus A6No Arthrobacter sp. Rue61a No Actinomyces sp. F0330No Chloroflexus sp. Y-400-flNo Chloroflexus aurantiacus J-10-flNo Deinococcus gobiensis I-0No Clostridium clariflavum DSM 19732No Eubacterium siraeum No Clostridium cellulolyticum H10No Clostridium thermocellum ATCC 27405No Ethanoligenens harbinense YUAN-3No Ruminococcus sp. No Ruminococcus bromii No Desulfosporosinus acidiphilus SJ4No Desulfosporosinus orientis DSM 765No Syntrophobotulus glycolicus DSM 8271No Desulfitobacterium hafniense Y51No Desulfitobacterium dehalogenans ATCC 51507No Desulfotomaculum ruminis DSM 2154No Acetobacterium woodii DSM 1030No Eubacterium eligens ATCC 27750No Clostridium saccharolyticum WM1No Clostridium lentocellum DSM 5427No Eubacterium rectale M104/1No Eubacterium rectale ATCC 33656No Roseburia intestinalis No Butyrivibrio proteoclasticus B316No Syntrophomonas wolfei subsp. wolfei str. GoettingenNo Clostridium sp. BNL1100No Clostridium novyi NTNo Clostridium beijerinckii NCIMB 8052No Clostridium cellulovorans 743BNo Thermoanaerobacterium thermosaccharolyticum DSM 571No Tepidanaerobacter acetatoxydans Re1No Carnobacterium sp. 17-4No Carnobacterium sp. WN1359 No Enterococcus faecalis 62No Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293No Lactobacillus crispatus ST1No Lactobacillus ruminis ATCC 27782No Lactobacillus brevis ATCC 367No Streptococcus pasteurianus ATCC 43144No Streptococcus infantarius subsp. infantarius CJ18No Streptococcus macedonicus ACA-DC 198No Brevibacillus brevis NBRC 100599No Paenibacillus terrae HPL-003No Geobacillus thermoleovorans CCB_US3_UF5No Bacillus sp. 1NLA3E No Bacillus subtilis subsp. subtilis str. 168No Bacillus pseudofirmus OF4No Bacillus cellulosilyticus DSM 2522No Macrococcus caseolyticus JCSC5402No Gemmatimonas aurantiaca T-27No Pelodictyon phaeoclathratiforme BU-1No Chlorobium phaeobacteroides DSM 266No Chlorobium limicola DSM 245No Chlorobaculum parvum NCIB 8327No Chlorobium tepidum TLSNo Chloroherpeton thalassium ATCC 35110No Prosthecochloris aestuarii DSM 271No Haliscomenobacter hydrossis DSM 1100No Saprospira grandis str. LewinNo Niastella koreensis GR20-10No Chitinophaga pinensis DSM 2588No Flexibacter litoralis DSM 6794No Cyclobacterium marinum DSM 745No Marivirga tractuosa DSM 4126No Leadbetterella byssophila DSM 17132No Cytophaga hutchinsonii ATCC 33406No Spirosoma linguale DSM 74No Odoribacter splanchnicus DSM 20712No Bacteroides sp. CF50 No Prevotella denticola F0289No Prevotella ruminicola 23No Porphyromonas gingivalis ATCC 33277No Bacteroides vulgatus ATCC 8482No Bacteroides thetaiotaomicron VPI-5482No Pedobacter saltans DSM 12145No Sphingobacterium sp. 21No Owenweeksia hongkongensis DSM 17368No Robiginitalea biformata HTCC2501No Aequorivita sublithincola DSM 14238No Muricauda ruestringensis DSM 13258No Capnocytophaga ochracea DSM 7271No Planctomyces limnophilus DSM 3776No Rhodopirellula baltica SH 1No Opitutus terrae PB90-1No Turneriella parva DSM 21527No Spirochaeta smaragdinae DSM 11293No Sphaerochaeta globus str. BuddyNo Treponema azotonutricium ZAS-9No Treponema denticola ATCC 35405No Candidatus Solibacter usitatus Ellin6076No Granulicella tundricola MP5ACTX9No Candidatus Koribacter versatilis Ellin345No Terriglobus saanensis SP1PR4No Acidobacterium capsulatum ATCC 51196No Candidatus Nitrospira defluviiNo Sebaldella termitidis ATCC 33386No Fusobacterium nucleatum subsp. nucleatum ATCC 25586No Candidatus Methylomirabilis oxyferaNo Acidithiobacillus ferrooxidans ATCC 53993No Helicobacter pylori B38No Sulfurovum sp. NBC37-1No Desulfarculus baarsii DSM 2075No Syntrophus aciditrophicus SBNo Syntrophobacter fumaroxidans MPOBNo Desulfotalea psychrophila LSv54No Desulfobulbus propionicus DSM 2032No Desulfatibacillum alkenivorans AK-01No Desulfobacterium autotrophicum HRM2No Desulfococcus oleovorans Hxd3No Geobacter daltonii FRC-32No Geobacter uraniireducens Rf4No Geobacter lovleyi SZNo Geobacter metallireducens GS-15No Pelobacter carbinolicus DSM 2380No Haliangium ochraceum DSM 14365No Sorangium cellulosum 'So ce 56'No Anaeromyxobacter sp. Fw109-5No Stigmatella aurantiaca DW4/3-1No Dechloromonas aromatica RCBNo Thauera sp. MZ1TNo Azoarcus sp. KH32C No Azoarcus sp. BH72No Dechlorosoma suillum PSNo Candidatus Accumulibacter phosphatis clade IIA str. UW-1No Rubrivivax gelatinosus IL144No Leptothrix cholodnii SP-6No Burkholderia xenovorans LB400No Burkholderia sp. CCGE1002No Burkholderia thailandensis E264No Burkholderia gladioli BSR3No Burkholderia glumae BGR1No Alicycliphilus denitrificans K601No Delftia sp. Cs1-4No Polaromonas sp. JS666No Rhodoferax ferrireducens T118No Acidovorax ebreus TPSYNo Acidovorax sp. KKS102 No Acidovorax sp. JS42No Acidovorax citrulli AAC00-1No Herminiimonas arsenicoxydans No Janthinobacterium sp. MarseilleNo Advenella kashmirensis WT001No Bordetella bronchiseptica RB50No Nitrosospira multiformis ATCC 25196No Nitrosomonas sp. Is79A3No Gallionella capsiferriformans ES-2No Brevundimonas subvibrioides ATCC 15264No Caulobacter sp. K31No Caulobacter crescentus NA1000No Caulobacter segnis ATCC 21756No Erythrobacter litoralis HTCC2594No Sphingobium sp. SYK-6No Sphingobium japonicum UT26SNo Sphingomonas sp. MM-1 No Sphingomonas wittichii RW1No Zymomonas mobilis subsp. mobilis NCIMB 11163No Maricaulis maris MCS10No Hirschia baltica ATCC 49814No Hyphomonas neptunium ATCC 15444No Paracoccus denitrificans PD1222No Rhodospirillum photometricum DSM 122No Tistrella mobilis KA081020-065No Magnetospirillum magneticum AMB-1No Azospirillum lipoferum 4BNo Methylobacterium chloromethanicum CM4No Methylobacterium extorquens AM1No Methylobacterium populi BJ001No Methylobacterium nodulans ORS 2060No Parvibaculum lavamentivorans DS-1No Brucella microti CCM 4915No Brucella pinnipedialis B2/94No Brucella canis ATCC 23365No Brucella suis ATCC 23445No Brucella melitensis ATCC 23457No Brucella ovis ATCC 25840No Brucella abortus S19No Sinorhizobium fredii NGR234No Sinorhizobium medicae WSM419No Rhizobium etli CIAT 652No Agrobacterium sp. H13-3No Beijerinckia indica subsp. indica ATCC 9039No Pelagibacterium halotolerans B2No Rhodomicrobium vannielii ATCC 17100No Hyphomicrobium sp. MC1No Oligotropha carboxidovorans OM4No Rhodopseudomonas palustris BisA53No Nitrobacter winogradskyi Nb-255No Nitrobacter hamburgensis X14No Bradyrhizobium sp. ORS 278No Saccharophagus degradans 2-40No Haemophilus parasuis SH0165No Actinobacillus pleuropneumoniae serovar 5b str. L20No Vibrio sp. Ex25No Vibrio parahaemolyticus RIMD 2210633No Vibrio vulnificus MO6-24/ONo Photobacterium profundum SS9No Shewanella piezotolerans WP3No Shewanella sediminis HAW-EB3No Shewanella denitrificans OS217No Shewanella pealeana ATCC 700345No Shewanella woodyi ATCC 51908No Colwellia psychrerythraea 34HNo Marinobacter aquaeolei VT8No Alteromonas sp. SN2No Marinomonas mediterranea MMB-1No Methylomonas methanica MC09No Methylococcus capsulatus str. BathNo Rhodanobacter denitrificans No Xanthomonas axonopodis pv. citri str. 306No Thiocystis violascens DSM 198No Nitrosococcus halophilus Nc4No Nitrosococcus oceani ATCC 19707No Rahnella aquatilis CIP 78.65 = ATCC 33071No Yersinia pseudotuberculosis IP 31758No Yersinia pestis Pestoides FNo Dickeya zeae Ech1591No Pectobacterium wasabiae WPP163No Pectobacterium sp. SCC3193 No Pectobacterium carotovorum subsp. carotovorum PC1No Erwinia billingiae Eb661No Erwinia amylovora ATCC 49946No Pseudomonas sp. UW4 No Pseudomonas fulva 12-XNo Pseudomonas sp. VLB120 No Psychrobacter sp. G No Thiomicrospira crunogena XCL-2No Methanocella paludicola SANAENo Methanosaeta harundinacea 6AcNo Methanosaeta thermophila PTNo Methanosaeta concilii GP6No Methanosalsum zhilinae DSM 4017No Methanococcoides burtonii DSM 6242No Methanosarcina acetivorans C2ANo Methanosarcina mazei Go1No Methanosarcina barkeri str. FusaroNo Methanohalophilus mahii DSM 5219No Methanoplanus petrolearius DSM 11571No Methanoculleus bourgensis MS2No Thermococcus gammatolerans EJ3No Salinarchaeum sp. Harcht-Bsk1 No Halopiger xanaduensis SH-6No Methanobacterium sp. AL-21No Haloterrigena turkmenica DSM 5511No Natrinema sp. J7-2No Natrialba magadii ATCC 43099No Halorhabdus utahensis DSM 12940No Methanosphaera stadtmanae DSM 3091No Methanobrevibacter ruminantium M1No Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frogNo Drosophila melanogaster FlyBase 5.12 - Fruit flyNo Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquitoNo Ascaris suum Victoria/Ghent No Caenorhabditis elegans WormBase WS218 - RoundwormNo Theobroma cacao Matina 1-6 v0.9 - CacaoNo Hordeum vulgare 22 - Domesticated barleyNo Oryza sativa ssp. Indica - Long-grained riceNo Synechocystis sp. PCC 6803 substr. PCC-PNo Synechocystis sp. PCC 6803 substr. PCC-NNo Synechocystis sp. PCC 6803 substr. GT-INo Synechocystis sp. PCC 6803No Synechococcus sp. JA-2-3B'a(2-13)No Synechococcus sp. JA-3-3AbNo Crinalium epipsammum PCC 9333No Oscillatoria nigro-viridis PCC 7112No Cyanothece sp. PCC 7822No Cyanothece sp. PCC 7425No Cyanothece sp. PCC 7424No Cyanothece sp. ATCC 51142No Cyanothece sp. PCC 8801No Gloeobacter kilaueensis Gloeobacter sp. JSNo Calothrix parietina Calothrix sp. PCC 6303No Cylindrospermum stagnale PCC 7417No Frankia sp. EuI1cNo Frankia sp. CcI3No Nocardiopsis alba ATCC BAA-2165No Streptomyces albus J1074No Streptomyces fulvissimus DSM 40593No Streptomyces venezuelae ATCC 10712No Saccharothrix espanaensis DSM 44229No Amycolatopsis mediterranei RBNo Amycolatopsis mediterranei S699No Amycolatopsis mediterranei S699No Amycolatopsis orientalis HCCB10007No Propionibacterium acidipropionici ATCC 4875No Actinoplanes friuliensis DSM 7358No Nocardia brasiliensis ATCC 700358No Mycobacterium sp. JDM601No Mycobacterium sp. KMSNo Mycobacterium sp. MCSNo Mycobacterium gilvum Spyr1No Mycobacterium kansasii ATCC 12478No Mycobacterium smegmatis JS623No Actinomyces graevenitzii C83 No Actinomyces viscosus C505No Deinococcus peraridilitoris DSM 19664No Eubacterium siraeum V10Sc8aNo Clostridium thermocellum DSM 1313No Ruminococcus champanellensis 18P13No Desulfosporosinus meridiei DSM 13257No Desulfitobacterium hafniense DCB-2No Clostridium saccharolyticum Clostridium cf. saccharolyticum K10No Coprococcus catus GD/7No Roseburia intestinalis XB6B4No Clostridium saccharoperbutylacetonicum N1-4(HMT)No Enterococcus mundtii QU 25No Enterococcus faecium DONo Enterococcus faecalis str. Symbioflor 1No Enterococcus faecalis D32No Enterococcus faecalis V583No Leuconostoc mesenteroides subsp. mesenteroides J18No Lactobacillus plantarum ZJ316No Lactobacillus brevis KB290No Lactococcus lactis subsp. lactis KF147No Streptococcus equi subsp. zooepidemicus ATCC 35246No Clostridium botulinum B str. Eklund 17BNo Streptococcus mutans GS-5No Streptococcus mutans LJ23No Streptococcus mutans UA159No Streptococcus thermophilus JIM 8232No Streptococcus suis TL13No Paenibacillus sp. Y412MC10No Bacillus amyloliquefaciens subsp. plantarum AS43.3No Bacillus subtilis subsp. subtilis 6051-HGWNo Bacillus thuringiensis serovar finitimus YBT-020No Bacillus cereus FRI-35No Bacillus cereus AH820No Bacillus cereus AH187No Bacillus cereus G9842No Bacillus cereus F837/76No Bacillus cereus NC7401No Bacillus cereus ATCC 14579No Staphylococcus aureus subsp. aureus MSHR1132No Staphylococcus pasteuri SP1No Staphylococcus aureus 08BA02176No Staphylococcus aureus subsp. aureus 71193No Staphylococcus aureus subsp. aureus S0385No Staphylococcus aureus subsp. aureus MSSA476No Chlorobium phaeobacteroides BS1No Emticicia oligotrophica DSM 17448No Porphyromonas gingivalis TDC60No Porphyromonas gingivalis W83No Bacteroides xylanisolvens XB1ANo Nonlabens dokdonensis DSW-6No Psychroflexus torquis ATCC 700755No Fusobacterium nucleatum subsp. vincentii 3_1_36A2No Arcobacter butzleri 7h1hNo Campylobacter jejuni Waterborne C.jejuni OutbreakNo Helicobacter pylori SouthAfrica20No Helicobacter pylori UM298No Helicobacter pylori UM299No Helicobacter pylori UM032No Helicobacter pylori Rif2No Helicobacter pylori Rif1No Helicobacter pylori HUP-B14No Helicobacter pylori Shi112No Helicobacter pylori Aklavik86No Helicobacter pylori Puno120No Helicobacter pylori ELS37No Helicobacter pylori Gambia94/24No Helicobacter pylori SouthAfrica7No Helicobacter pylori India7No Helicobacter pylori F30No Helicobacter pylori Sat464No Helicobacter pylori Cuz20No Helicobacter pylori PeCan4No Helicobacter pylori SJM180No Helicobacter pylori G27No Helicobacter pylori Shi470No Helicobacter pylori 26695No Helicobacter pylori 26695No Desulfobacula toluolica Tol2No Desulfovibrio gigas DSM 1382 = ATCC 19364No Desulfovibrio desulfuricans ND132No Geobacter sp. M18No Geobacter sulfurreducens PCANo Sorangium cellulosum So0157-2No Myxococcus stipitatus DSM 14675No Burkholderia phenoliruptrix BR3459aNo Ralstonia solanacearum FQY_4No Ralstonia solanacearum GMI1000No Burkholderia sp. YI23No Burkholderia ambifaria MC40-6No Candidatus Symbiobacter mobilis Comamonadaceae bacterium CRNo Sulfuricella denitrificans skB26No Caulobacter crescentus CB15No Zymomonas mobilis subsp. mobilis ATCC 29191No Zymomonas mobilis subsp. mobilis ATCC 10988No Zymomonas mobilis subsp. mobilis ZM4No Octadecabacter arcticus 238No Rhodobacter sphaeroides ATCC 17025No Rhodobacter sphaeroides 2.4.1No Methylobacterium extorquens DM4No Methylobacterium extorquens PA1No Brucella ceti TE10759-12No Brucella ceti TE28753-12No Brucella canis HSK A52141No Brucella suis VBI22No Brucella suis 1330No Brucella suis 1330No Brucella melitensis NINo Brucella melitensis M5-90No Brucella melitensis M28No Brucella melitensis bv. 1 str. 16MNo Brucella abortus A13334No Brucella melitensis biovar Abortus 2308No Brucella abortus bv. 1 str. 9-941No Sinorhizobium fredii USDA 257No Sinorhizobium fredii HH103No Mesorhizobium australicum WSM2073No Hyphomicrobium denitrificans 1NES1No Oligotropha carboxidovorans OM5No Oligotropha carboxidovorans OM5No Rhodopseudomonas palustris DX-1No Rhodopseudomonas palustris TIE-1No Rhodopseudomonas palustris HaA2No Rhodopseudomonas palustris BisB5No Rhodopseudomonas palustris BisB18No Rhodopseudomonas palustris CGA009No Bradyrhizobium sp. BTAi1No Bibersteinia trehalosi USDA-ARS-USMARC-192No Aggregatibacter actinomycetemcomitans ANH9381No Aggregatibacter actinomycetemcomitans D11S-1No Pasteurella multocida subsp. multocida str. HN06No Vibrio vulnificus CMCP6No Vibrio vulnificus YJ016No Shewanella baltica BA175No Shewanella baltica OS223No Shewanella sp. MR-7No Shewanella putrefaciens 200No Xanthomonas axonopodis pv. citrumelo F1No Xanthomonas axonopodis Xac29-1No Thioalkalivibrio nitratireducens DSM 14787No Thioflavicoccus mobilis 8321No Rahnella aquatilis HX2No Yersinia pseudotuberculosis PB1/+No Yersinia pseudotuberculosis YPIIINo Yersinia pestis A1122No Yersinia pestis Z176003No Yersinia pestis D182038No Yersinia pestis D106004No Yersinia pestis biovar Medievalis str. Harbin 35No Yersinia pestis Nepal516No Yersinia pestis AntiquaNo Yersinia pestis CO92No Yersinia pestis KIM10+No Yersinia enterocolitica subsp. palearctica 105.5R(r)No Yersinia enterocolitica subsp. palearctica Y11No Cronobacter sakazakii CMCC 45402No Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633No Salmonella enterica subsp. enterica serovar Enteritidis str. P125109No Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853No Salmonella enterica subsp. enterica serovar Agona str. 24249No Salmonella enterica subsp. enterica serovar Agona str. SL483No Salmonella enterica subsp. enterica serovar Pullorum str. S06004No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078No Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91No Escherichia coli E. coli PMV-1No Escherichia coli str. 'clone D i2'No Escherichia coli str. 'clone D i14'No Escherichia coli IAI39No Escherichia coli 536No Escherichia coli CFT073No Pseudomonas denitrificans ATCC 13867No Pseudomonas syringae pv. syringae B728aNo Pseudomonas stutzeri CCUG 29243No Pseudomonas monteilii SB3101No Pseudomonas monteilii SB3078No Pseudomonas putida DOT-T1ENo Pseudomonas putida W619No Pseudomonas fluorescens F113No Pseudomonas fluorescens R124No Pseudomonas aeruginosa PA7No Acinetobacter baumannii BJAB0715No Acinetobacter baumannii D1279779No Acinetobacter junii SH205No Acinetobacter johnsonii SH046No Acinetobacter lwoffii SH145No Methylophaga sp. JAM7No Candidatus Nitrososphaera gargensis Ga9.2No Methanolobus psychrophilus R15No Methanosarcina mazei Tuc01No Methanoregula formicica Methanoregula formicicum SMSPNo Thermococcus sp. CL1No Halovivax ruber XH-70No Natrinema pellirubrum DSM 15624No Methanobacterium sp. SWAN-1No Homo sapiens 69_37 - HumanNo Pan troglodytes 69_2.1.4 - ChimpanzeeNo Gorilla gorilla 69_3.1 - Western gorillaNo Pongo abelii 69_2 - Sumatran orangutanNo Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbonNo Macaca mulatta 69_1 - Rhesus monkeyNo Callithrix jacchus 69_3.2.1 - White-tufted-ear marmosetNo Otolemur garnettii 69_3 - Small-eared galagoNo Tarsius syrichta 69_1 No Microcebus murinus 69_1 - Gray mouse lemurNo Rattus norvegicus 69_3.4 - Norway ratNo Mus musculus 69_38 - House mouseNo Dipodomys ordii 69_1 - Ord's kangaroo ratNo Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrelNo Cavia porcellus 69_3 - Domestic guinea pigNo Oryctolagus cuniculus 69_2 - RabbitNo Ochotona princeps 69 - American pikaNo Tupaia belangeri 69 - Northern tree shrewNo Sus scrofa 69_10.2 - PigNo Bos taurus 69_3.1 - CattleNo Vicugna pacos 69_1 - AlpacaNo Tursiops truncatus 69_1 - Bottlenose dolphinNo Mustela putorius furo 69_1.0 - Domestic ferretNo Ailuropoda melanoleuca 69_1 - Giant pandaNo Canis familiaris 69_3.1 - DogNo Felis catus 69 - Domestic catNo Equus caballus 69_2 - HorseNo Myotis lucifugus 69_2.0 - Little brown batNo Pteropus vampyrus 69_1 - Large flying foxNo Sorex araneus 69_1 - European shrewNo Erinaceus europaeus 69 - Western European hedgehogNo Procavia capensis 69_1 - Cape rock hyraxNo Loxodonta africana 69_3 - African savanna elephantNo Echinops telfairi 69 - Small Madagascar hedgehogNo Dasypus novemcinctus 69_2 - Nine-banded armadilloNo Choloepus hoffmanni 69_1 - Hoffmann's two-fingered slothNo Macropus eugenii 69_1.0 - Tammar wallabyNo Sarcophilus harrisii 69_7.0 - Tasmanian devilNo Monodelphis domestica 69_5 - Gray short-tailed opossumNo Ornithorhynchus anatinus 69_5 - PlatypusNo Petromyzon marinus 69_7.0 - Sea lampreyNo Meleagris gallopavo 69_2 - TurkeyNo Gallus gallus 69_2 - ChickenNo Taeniopygia guttata 69_3.2.4 - Zebra finchNo Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtleNo Anolis carolinensis 69_2.0 - Green anoleNo Xenopus tropicalis 69_4.2 - Tropical clawed frogNo Latimeria chalumnae 69_1 - CoelacanthNo Gadus morhua 69_1 - Atlantic codNo Tetraodon nigroviridis 69_8 - Spotted green pufferfishNo Takifugu rubripes 69_4 - TorafuguNo Gasterosteus aculeatus 69_1 - Three-spined sticklebackNo Oryzias latipes 69_1 - Japanese medakaNo Xiphophorus maculatus 69_4.4.2 - Southern platyfishNo Oreochromis niloticus 69_1.0 - Nile tilapiaNo Danio rerio 69_9 - ZebrafishNo Ciona savignyi 69_2.0 - Pacific transparent sea squirtNo Ciona intestinalis 69 - Vase tunicateNo Drosophila melanogaster 69_5 - Fruit flyNo Caenorhabditis elegans 69_215 - RoundwormNo Arabidopsis thaliana 10 - Thale cressNo Homo sapiens 75_37 - HumanNo Homo sapiens No Mus musculus 63_37 (longest transcript per gene) - House mouseNo Heliconius numata No Loa loa v3.3 - Eye wormNo Wuchereria bancrofti v1.0 - Agent of lymphatic filariasisNo Brugia malayi v1.0 - Agent of lymphatic filariasisNo Picea sitchensis No Lotus japonicus No Malus x domestica - AppleNo Ricinus communis No Nicotiana benthamiana 0.4.4 No Solanum pimpinellifolium A-1.0 - Currant tomatoNo Solanum lycopersicum v2.3 - TomatoNo Phoenix dactylifera No 2_050719S (meta-genome)No 2_Base_of_chrolophyll_max (meta-genome)No 3_Below_base_of_euphotic (meta-genome)No 4_050719Q (meta-genome)No 4_Deep_abyss (meta-genome)No 5_050719P (meta-genome)No 5_Below_upper_mesopelagic (meta-genome)No 6_Upper_euphotic (meta-genome)No Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)No Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)No Air microbial communities Singapore indoor air filters 1 (meta-genome)No Air microbial communities Singapore indoor air filters 2 (meta-genome)No Atta cephalotes fungus garden (ACEF) (meta-genome)No Combined (meta-genome)No Cyphomyrmex longiscapus fungus garden (meta-genome)No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)No Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)No Dump bottom (Dump bottom) (meta-genome)No Dump top (Dump top) (meta-genome)No Endophytic microbiome from Rice (meta-genome)No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)No Freshwater propionate enrichment of Brocadia fulgida (meta-genome)No Fungus garden combined (combined) (meta-genome)No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)No Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes No Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)No Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)No Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)No Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)No Human Gut Community Subject 7 (meta-genome)No Human Gut Community Subject 8 (meta-genome)No Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)No Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) No Marine anammox bioreactor enriched for Scalindua species (meta-genome)No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)No Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)No Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)No Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)No Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) No Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) No Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)No Mouse Gut Community ob2 (meta-genome)No NCBI 2017_08 genome No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)No Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)No simHC - Simulated High Complexity Metagenome (meta-genome)No simLC - Simulated Low Complexity Metagenome (meta-genome)No simMC - Simulated Medium Complexity Metagenome (meta-genome)No Sludge/Australian, Phrap Assembly (meta-genome)No Sludge/US, Jazz Assembly (meta-genome)No Sludge/US, Phrap Assembly (meta-genome)No Soil microbial communities from Minnesota Farm (meta-genome)No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)No Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)No STRING v9.0.5 (STRING)No Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) No Termite Protist Endosymbiont Community (meta-genome)No Uniprot 2018_03 genome No Uranium Contaminated Groundwater FW106 (meta-genome)No Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)No Global Ocean Sampling Expedition (GOS) No NCBI plasmid sequences (Plasmids) No NCBI viral sequences (Viral) No PDB chains (SCOP 1.75 ) (PDB) No Protein Data Bank (all PDB sequenc) No SCOP2 SCOPe CATH ECOD (all domain sequ) No TargetDB No The Salmonella enterica Pan-genome (meta-genome) No UniProt ALL (only advised for small superfamilies)
