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Home > SCOP hierarchy > Cryptochrome/photolyase, N-terminal domain > Alignments

Cryptochrome/photolyase, N-terminal domain alignments

These alignments are sequences aligned to the 0046364 model.

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The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                      10        20        30        40             50        60        70        80 
                       |         |         |         |              |         |         |         | 
d1dnpa2 .....t-THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQW.....ATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV
d1iqra2 .....g-PLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNN-.....--LKTTPRRRAWFLENVRALREAYRARGGALWVLEGL---
d1np7a2 mkhvpp-TVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFaqthqGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGL---
d1owla2 .....a-PILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQIL.....QSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGD---
d1u3da2 .....c--SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEE.....GHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTD--


               90       100       110       120         130       140       150       160       170 
                |         |         |         |           |         |         |         |         | 
d1dnpa2 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL..RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVA.
d1iqra2 -PWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL..-PVPLHLLPAPHLLPPD-----LPRAYRVYTPFSRLYRGAA-PPLPPPEA.
d1np7a2 -PEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLtiLGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFA.
d1owla2 -PQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALktAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTe
d1u3da2 -SVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLtaQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP.


               180       190       200                       
                 |         |         |                       
d1dnpa2 APKVRSSGSIEPSPSITLNYPRQSFDT---ahf....................
d1iqra2 L-----------------------------pkgpeegeipredpg........
d1np7a2 PSQL--------------------------lpspnikleltapppeffpqinf
d1owla2 LVDLSPEQLTAIAPLLLSELP---------tlkqlgfdwdggf..........
d1u3da2 PKKIISG-----------------------dvskcvadplvf...........


Statistics on alignment.	Save alignment.

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Refine alignments

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Add your sequences to the alignment:

Members of the same:	including
Include all superfamily members:	, or just those assigned by the selected model:
Initial T99 seed sequence:	NoYes

You may enter many sequences at once using FASTA format:

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Model: 0046364 (list models)

Initial SAMT99 seed:
Alignment:

Display Options:

Output in FASTA-like format:	NoYes
Output column indices:	NoYes
Sequence index (number) on each line:	NoYes

Max number of insertions shown:	(0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than:	residues

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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.

Select to display	Genome
NoYes	Physcomitrella patens subsp. patens 22
NoYes	Anas platyrhynchos 76_1.0 - Mallard
NoYes	Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes	Anolis carolinensis 76_2.0 - Green anole
NoYes	Xenopus laevis - African clawed frog
NoYes	Lepisosteus oculatus 76 - Spotted gar
NoYes	Gadus morhua 76_1 - Atlantic cod
NoYes	Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes	Takifugu rubripes 76_4 - Torafugu
NoYes	Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes	Oryzias latipes 76_1 - Japanese medaka
NoYes	Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes	Poecilia formosa 76 - Amazon molly
NoYes	Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes	Astyanax mexicanus 76 - Mexican tetra
NoYes	Danio rerio 76_9 - Zebrafish
NoYes	Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes	Adineta vaga
NoYes	Crassostrea gigas 22 - Pacific oyster
NoYes	Lottia gigantea - Owl limpet
NoYes	Daphnia pulex - Common water flea
NoYes	Nematostella vectensis 1.0 - Starlet sea anemone
NoYes	Hydra vulgaris
NoYes	Trichoplax adhaerens
NoYes	Proterospongia sp. ATCC 50818
NoYes	Monosiga brevicollis
NoYes	Conidiobolus coronatus NRRL28638 v1.0
NoYes	Mortierella verticillata NRRL 6337
NoYes	Mucor circinelloides
NoYes	Sporisorium reilianum 22
NoYes	Microbotryum violaceum 22
NoYes	Wolfiporia cocos MD-104 SS10 v1.0
NoYes	Magnaporthe poae ATCC 64411 22
NoYes	Magnaporthe grisea 70-15
NoYes	Verticillium dahliae VdLs.17
NoYes	Setosphaeria turcica v1.0
NoYes	Cochliobolus miyabeanus ATCC 44560 v1.0
NoYes	Cochliobolus victoriae FI3 v1.0
NoYes	Cochliobolus carbonum 26-R-13 v1.0
NoYes	Cochliobolus heterostrophus - Southern corn leaf blight pathogen
NoYes	Alternaria brassicicola
NoYes	Cochliobolus lunatus m118 v2.0
NoYes	Pyrenophora teres f. teres 22
NoYes	Mycosphaerella graminicola IPO323
NoYes	Mycosphaerella fijiensis CIRAD86
NoYes	Aureobasidium pullulans var. subglaciale EXF-2481 v1.0
NoYes	Neosartorya fischeri NRRL 181
NoYes	Selaginella moellendorffii
NoYes	Pinus taeda - Loblolly pine
NoYes	Picea abies - Norway spruce
NoYes	Eucalyptus grandis v201 - Rose gum
NoYes	Theobroma cacao B97-61/B2 v1 - Cacao
NoYes	Gossypium raimondii v221
NoYes	Citrus clementina v165
NoYes	Citrus sinensis v154 - Sweet orange
NoYes	Thellungiella halophila v173
NoYes	Brassica rapa Chiifu-401 1.2 - Field mustard
NoYes	Capsella rubella v183
NoYes	Arabidopsis lyrata - Lyrate rockcress
NoYes	Arabidopsis thaliana 10 - Thale cress
NoYes	Carica papaya - Papaya
NoYes	Medicago truncatula - Barrel medic
NoYes	Phaseolus vulgaris v186 - String bean
NoYes	Glycine max v109 - Soybean
NoYes	Cucumis sativus v122 - Cucumber
NoYes	Fragaria vesca - Wild strawberry
NoYes	Malus domestica v196 - Apple
NoYes	Prunus persica v139 - Peach
NoYes	Linum usitatissimum v200 - Flax
NoYes	Manihot esculenta v147 - Cassava
NoYes	Populus trichocarpa v156 - Black cottonwood
NoYes	Vitis vinifera - Wine grape
NoYes	Mimulus guttatus v140 - Spotted monkey flower
NoYes	Solanum lycopersicum v.2.3 - Tomato
NoYes	Solanum tuberosum - Potato
NoYes	Actinidia chinensis Hongyang
NoYes	Aquilegia coerulea v195
NoYes	Triticum urartu 22
NoYes	Triticum aestivum 22 - Bread wheat
NoYes	Aegilops tauschii 22
NoYes	Brachypodium distachyon - Stiff brome
NoYes	Oryza barthii 22 - African wild rice
NoYes	Oryza meridionalis 22
NoYes	Oryza glumaepatula 22
NoYes	Oryza glaberrima - African rice
NoYes	Oryza punctata 22
NoYes	Oryza nivara 22
NoYes	Oryza brachyantha 22 - Malo sina
NoYes	Oryza sativa ssp. japonica 5.0 - Japanese rice
NoYes	Oryza sativa v193 - Rice
NoYes	Phyllostachys heterocyclavar. pubescens - Mosochiku
NoYes	Panicum virgatum v202 - Switchgrass
NoYes	Setaria italica v164 - Foxtail millet
NoYes	Zea mays subsp. mays - Maize
NoYes	Zea mays v181 - Maize
NoYes	Sorghum bicolor - Sorghum
NoYes	Musa balbisiana - Balbis banana
NoYes	Musa acuminata 22 - Wild Malaysian banana
NoYes	Amborella trichopoda 22
NoYes	Physcomitrella patens
NoYes	Coccomyxa subellipsoidea sp. C-169 v2
NoYes	Asterochloris sp. Cgr/DA1pho v1.0
NoYes	Chlorella variabilis sp. NC64A
NoYes	Chlorella vulgaris
NoYes	Volvox carteri f. nagariensis
NoYes	Volvox carteri v199
NoYes	Chlamydomonas reinhardtii 4.0
NoYes	Ostreococcus sp. RCC809
NoYes	Ostreococcus lucimarinus CCE9901
NoYes	Ostreococcus tauri
NoYes	Micromonas sp. RCC299
NoYes	Micromonas pusilla CCMP1545 v3.0
NoYes	Cyanidioschyzon merolae strain 10D 22
NoYes	Cyanidioschyzon merolae
NoYes	Porphyridium purpureum 02_2012
NoYes	Thecamonas trahens ATCC 50062
NoYes	Bigelowiella natans CCMP2755 22
NoYes	Ectocarpus siliculosus
NoYes	Phytophthora capsici
NoYes	Fragilariopsis cylindrus
NoYes	Tetrahymena thermophila SB210 1
NoYes	Symbiodinium minutum clade B1 v1.2
NoYes	Naegleria gruberi
NoYes	Guillardia theta CCMP2712 v1.0
NoYes	Leptolyngbya sp. PCC 7376
NoYes	Pseudanabaena sp. PCC 7367
NoYes	Acaryochloris marina MBIC11017
NoYes	Synechocystis sp. PCC 6803
NoYes	Thermosynechococcus sp. NK55
NoYes	Thermosynechococcus elongatus BP-1
NoYes	Synechococcus sp. PCC 7502
NoYes	Synechococcus sp. PCC 6312
NoYes	Synechococcus sp. CC9311
NoYes	Synechococcus elongatus PCC 7942
NoYes	Prochlorococcus marinus str. MIT 9515
NoYes	Microcoleus sp. PCC 7113
NoYes	Trichodesmium erythraeum IMS101
NoYes	Geitlerinema sp. PCC 7407
NoYes	Cyanothece sp. PCC 8802
NoYes	Gloeocapsa sp. PCC 7428
NoYes	Halothece sp. PCC 7418
NoYes	Microcystis aeruginosa NIES-843
NoYes	Gloeobacter violaceus PCC 7421
NoYes	Rivularia sp. PCC 7116
NoYes	Calothrix sp. PCC 7507
NoYes	Anabaena variabilis ATCC 29413
NoYes	'Nostoc azollae' 0708
NoYes	Nostoc sp. PCC 7107
NoYes	Nostoc punctiforme PCC 73102
NoYes	Nostoc sp. PCC 7120
NoYes	Nostoc sp. PCC 7524
NoYes	Anabaena sp. 90
NoYes	Conexibacter woesei DSM 14684
NoYes	Ilumatobacter coccineus
NoYes	Nakamurella multipartita DSM 44233
NoYes	Frankia alni ACN14a
NoYes	Actinosynnema mirum DSM 43827
NoYes	Pseudonocardia dioxanivorans CB1190
NoYes	Amycolatopsis mediterranei U32
NoYes	Nocardioides sp. JS614
NoYes	Segniliparus rotundus DSM 44985
NoYes	Gordonia polyisoprenivorans VH2
NoYes	Gordonia bronchialis DSM 43247
NoYes	Mycobacterium sp. JLS
NoYes	Mycobacterium avium 104
NoYes	Mycobacterium vanbaalenii PYR-1
NoYes	Mycobacterium ulcerans Agy99
NoYes	Mycobacterium gilvum PYR-GCK
NoYes	Mycobacterium chubuense NBB4
NoYes	Mycobacterium marinum M
NoYes	Mycobacterium smegmatis str. MC2 155
NoYes	Corynebacterium efficiens YS-314
NoYes	Leifsonia xyli subsp. xyli str. CTCB07
NoYes	Microbacterium testaceum StLB037
NoYes	Clavibacter michiganensis subsp. michiganensis NCPPB 382
NoYes	Intrasporangium calvum DSM 43043
NoYes	Cellulomonas flavigena DSM 20109
NoYes	[Cellvibrio] gilvus ATCC 13127
NoYes	Arthrobacter phenanthrenivorans Sphe3
NoYes	Arthrobacter chlorophenolicus A6
NoYes	Arthrobacter aurescens TC1
NoYes	Arthrobacter arilaitensis Re117
NoYes	Kocuria rhizophila DC2201
NoYes	Arthrobacter sp. Rue61a
NoYes	Arthrobacter sp. FB24
NoYes	Renibacterium salmoninarum ATCC 33209
NoYes	Caldilinea aerophila DSM 14535 = NBRC 104270
NoYes	Herpetosiphon aurantiacus DSM 785
NoYes	Roseiflexus sp. RS-1
NoYes	Roseiflexus castenholzii DSM 13941
NoYes	Chloroflexus sp. MS-G
NoYes	Chloroflexus sp. Y-400-fl
NoYes	Chloroflexus aggregans DSM 9485
NoYes	Chloroflexus aurantiacus J-10-fl
NoYes	Meiothermus silvanus DSM 9946
NoYes	Meiothermus ruber DSM 1279
NoYes	Thermus sp. CCB_US3_UF1
NoYes	Thermus thermophilus HB27
NoYes	Leuconostoc citreum KM20
NoYes	Brevibacillus brevis NBRC 100599
NoYes	Bacillus megaterium DSM 319
NoYes	Chlorobium limicola DSM 245
NoYes	Chloroherpeton thalassium ATCC 35110
NoYes	Prosthecochloris aestuarii DSM 271
NoYes	Haliscomenobacter hydrossis DSM 1100
NoYes	Saprospira grandis str. Lewin
NoYes	Niastella koreensis GR20-10
NoYes	Salinibacter ruber M8
NoYes	Belliella baltica DSM 15883
NoYes	Cyclobacterium marinum DSM 745
NoYes	Marivirga tractuosa DSM 4126
NoYes	Fibrella aestuarina
NoYes	Dyadobacter fermentans DSM 18053
NoYes	Cytophaga hutchinsonii ATCC 33406
NoYes	Spirosoma linguale DSM 74
NoYes	Runella slithyformis DSM 19594
NoYes	Bacteroides sp. CF50
NoYes	Pedobacter saltans DSM 12145
NoYes	Solitalea canadensis DSM 3403
NoYes	Pedobacter heparinus DSM 2366
NoYes	Sphingobacterium sp. 21
NoYes	Fluviicola taffensis DSM 16823
NoYes	Zunongwangia profunda SM-A87
NoYes	Krokinobacter sp. 4H-3-7-5
NoYes	Gramella forsetii KT0803
NoYes	Lacinutrix sp. 5H-3-7-4
NoYes	Robiginitalea biformata HTCC2501
NoYes	Croceibacter atlanticus HTCC2559
NoYes	Aequorivita sublithincola DSM 14238
NoYes	Muricauda ruestringensis DSM 13258
NoYes	Cellulophaga algicola DSM 14237
NoYes	Polaribacter sp. MED152
NoYes	Flavobacterium indicum GPTSA100-9
NoYes	Flavobacterium psychrophilum JIP02/86
NoYes	Candidatus Protochlamydia amoebophila UWE25
NoYes	Parachlamydia acanthamoebae UV-7
NoYes	Planctomyces brasiliensis DSM 5305
NoYes	Rhodopirellula baltica SH 1
NoYes	Coraliomargarita akajimensis DSM 45221
NoYes	Opitutus terrae PB90-1
NoYes	Desulfurispirillum indicum S5
NoYes	Candidatus Chloracidobacterium thermophilum B
NoYes	Candidatus Nitrospira defluvii
NoYes	Leptospirillum ferrooxidans C2-3
NoYes	candidate division SR1 bacterium RAAC1_SR1_1
NoYes	Acidithiobacillus caldus SM-1
NoYes	Bacteriovorax marinus SJ
NoYes	Bdellovibrio bacteriovorus HD100
NoYes	Thauera sp. MZ1T
NoYes	Pandoraea sp. RB-44
NoYes	Pseudogulbenkiania sp. NH8B
NoYes	Laribacter hongkongensis HLHK9
NoYes	Chromobacterium violaceum ATCC 12472
NoYes	Candidatus Accumulibacter phosphatis clade IIA str. UW-1
NoYes	beta proteobacterium CB
NoYes	Burkholderia rhizoxinica HKI 454
NoYes	Burkholderia phymatum STM815
NoYes	Cupriavidus metallidurans CH34
NoYes	Ralstonia pickettii 12D
NoYes	Burkholderia thailandensis E264
NoYes	Burkholderia pseudomallei 1106a
NoYes	Burkholderia mallei SAVP1
NoYes	Burkholderia ambifaria AMMD
NoYes	Burkholderia cenocepacia HI2424
NoYes	Burkholderia multivorans ATCC 17616
NoYes	Burkholderia vietnamiensis G4
NoYes	Burkholderia gladioli BSR3
NoYes	Burkholderia glumae BGR1
NoYes	Comamonas testosteroni CNB-2
NoYes	Collimonas fungivorans Ter331
NoYes	Janthinobacterium sp. Marseille
NoYes	Herbaspirillum seropedicae SmR1
NoYes	Advenella kashmirensis WT001
NoYes	Bordetella avium 197N
NoYes	Achromobacter xylosoxidans A8
NoYes	Achromobacter xylosoxidans
NoYes	Gallionella capsiferriformans ES-2
NoYes	Methylotenera mobilis JLW8
NoYes	Magnetococcus marinus MC-1
NoYes	Parvularcula bermudensis HTCC2503
NoYes	Caulobacter sp. K31
NoYes	Caulobacter crescentus NA1000
NoYes	Caulobacter segnis ATCC 21756
NoYes	Novosphingobium sp. PP1Y
NoYes	Novosphingobium aromaticivorans DSM 12444
NoYes	Maricaulis maris MCS10
NoYes	Hirschia baltica ATCC 49814
NoYes	Hyphomonas neptunium ATCC 15444
NoYes	Dinoroseobacter shibae DFL 12
NoYes	Phaeobacter gallaeciensis 2.10
NoYes	Pseudovibrio sp. FO-BEG1
NoYes	Jannaschia sp. CCS1
NoYes	Ruegeria sp. TM1040
NoYes	Roseobacter litoralis Och 149
NoYes	Roseobacter denitrificans OCh 114
NoYes	Rhodobacter capsulatus SB 1003
NoYes	Tistrella mobilis KA081020-065
NoYes	Rhodospirillum centenum SW
NoYes	Rhodospirillum rubrum F11
NoYes	Azospirillum lipoferum 4B
NoYes	Azospirillum sp. B510
NoYes	Azospirillum brasilense Sp245
NoYes	Gluconacetobacter xylinus NBRC 3288
NoYes	Gluconacetobacter diazotrophicus PAl 5
NoYes	Polymorphum gilvum SL003B-26A1
NoYes	Micavibrio aeruginosavorus ARL-13
NoYes	Candidatus Puniceispirillum marinum IMCC1322
NoYes	Starkeya novella DSM 506
NoYes	Parvibaculum lavamentivorans DS-1
NoYes	Genome sequence of Rhizobium sp. strain IRBG74
NoYes	Rhizobium etli CIAT 652
NoYes	Rhizobium leguminosarum bv. viciae 3841
NoYes	Agrobacterium tumefaciens str. C58
NoYes	Agrobacterium sp. H13-3
NoYes	Agrobacterium vitis S4
NoYes	Candidatus Liberibacter asiaticus str. psy62
NoYes	Mesorhizobium loti MAFF303099
NoYes	Pelagibacterium halotolerans B2
NoYes	Rhodomicrobium vannielii ATCC 17100
NoYes	Hyphomicrobium sp. MC1
NoYes	Hyphomicrobium denitrificans ATCC 51888
NoYes	Rhodopseudomonas palustris BisA53
NoYes	Methylocystis sp. SC2
NoYes	Teredinibacter turnerae T7901
NoYes	Cellvibrio japonicus Ueda107
NoYes	Oceanimonas sp. GK1
NoYes	Tolumonas auensis DSM 9187
NoYes	Aeromonas veronii B565
NoYes	Aeromonas salmonicida subsp. salmonicida A449
NoYes	Aeromonas hydrophila subsp. hydrophila ATCC 7966
NoYes	Aliivibrio salmonicida LFI1238
NoYes	Vibrio fischeri MJ11
NoYes	Vibrio sp. Ex25
NoYes	Vibrio harveyi ATCC BAA-1116
NoYes	Vibrio parahaemolyticus RIMD 2210633
NoYes	Vibrio splendidus LGP32
NoYes	Vibrio anguillarum 775
NoYes	Vibrio furnissii NCTC 11218
NoYes	Vibrio vulnificus MO6-24/O
NoYes	Vibrio cholerae O395
NoYes	Psychromonas ingrahamii 37
NoYes	Shewanella loihica PV-4
NoYes	Shewanella denitrificans OS217
NoYes	Shewanella oneidensis MR-1
NoYes	Shewanella baltica OS185
NoYes	Shewanella woodyi ATCC 51908
NoYes	Shewanella sp. MR-4
NoYes	Shewanella amazonensis SB2B
NoYes	Shewanella frigidimarina NCIMB 400
NoYes	Shewanella putrefaciens CN-32
NoYes	Pseudoalteromonas sp. SM9913
NoYes	Pseudoalteromonas haloplanktis TAC125
NoYes	Glaciecola sp. 4H-3-7+YE-5
NoYes	Glaciecola nitratireducens FR1064
NoYes	Marinobacter adhaerens HP15
NoYes	Marinobacter sp. BSs20148
NoYes	Marinobacter hydrocarbonoclasticus ATCC 49840
NoYes	Marinobacter aquaeolei VT8
NoYes	Alteromonas macleodii str. 'Deep ecotype'
NoYes	Kangiella koreensis DSM 16069
NoYes	Hahella chejuensis KCTC 2396
NoYes	Alcanivorax borkumensis SK2
NoYes	Chromohalobacter salexigens DSM 3043
NoYes	Halomonas elongata DSM 2581
NoYes	Methylomonas methanica MC09
NoYes	Rhodanobacter denitrificans
NoYes	Frateuria aurantia DSM 6220
NoYes	Pseudoxanthomonas spadix BD-a59
NoYes	Pseudoxanthomonas suwonensis 11-1
NoYes	Stenotrophomonas maltophilia K279a
NoYes	Xanthomonas axonopodis pv. citri str. 306
NoYes	Xanthomonas albilineans GPE PC73
NoYes	Xanthomonas oryzae pv. oryzae PXO99A
NoYes	Xanthomonas campestris pv. campestris str. B100
NoYes	Halothiobacillus neapolitanus c2
NoYes	Spiribacter sp. UAH-SP71
NoYes	Alkalilimnicola ehrlichii MLHE-1
NoYes	Thioalkalivibrio sulfidophilus HL-EbGr7
NoYes	Thioalkalivibrio sp. K90mix
NoYes	Thiocystis violascens DSM 198
NoYes	Nitrosococcus halophilus Nc4
NoYes	Legionella longbeachae NSW150
NoYes	Legionella pneumophila str. Corby
NoYes	Providencia stuartii MRSN 2154
NoYes	Proteus mirabilis HI4320
NoYes	Edwardsiella ictaluri 93-146
NoYes	Edwardsiella tarda EIB202
NoYes	Rahnella sp. Y9602
NoYes	Rahnella aquatilis CIP 78.65 = ATCC 33071
NoYes	Yersinia pseudotuberculosis IP 31758
NoYes	Yersinia pestis Pestoides F
NoYes	Yersinia enterocolitica subsp. enterocolitica 8081
NoYes	Serratia sp. AS12
NoYes	Serratia sp. ATCC 39006
NoYes	Serratia plymuthica AS9
NoYes	Serratia proteamaculans 568
NoYes	Dickeya dadantii Ech703
NoYes	Dickeya zeae Ech1591
NoYes	Pectobacterium wasabiae WPP163
NoYes	Pectobacterium sp. SCC3193
NoYes	Pectobacterium atrosepticum SCRI1043
NoYes	Pectobacterium carotovorum subsp. carotovorum PC1
NoYes	Sodalis glossinidius str. 'morsitans'
NoYes	Pantoea sp. At-9b
NoYes	Pantoea vagans C9-1
NoYes	Pantoea ananatis LMG 20103
NoYes	Erwinia tasmaniensis Et1/99
NoYes	Erwinia sp. Ejp617
NoYes	Erwinia billingiae Eb661
NoYes	Erwinia pyrifoliae Ep1/96
NoYes	Erwinia amylovora ATCC 49946
NoYes	Cronobacter turicensis z3032
NoYes	Cronobacter sakazakii ES15
NoYes	Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
NoYes	Enterobacteriaceae bacterium strain FGI 57
NoYes	Shigella sonnei Ss046
NoYes	Shigella flexneri 5 str. 8401
NoYes	Shigella dysenteriae Sd197
NoYes	Shigella boydii CDC 3083-94
NoYes	Salmonella bongori NCTC 12419
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
NoYes	Klebsiella oxytoca E718
NoYes	Klebsiella variicola At-22
NoYes	Klebsiella pneumoniae NTUH-K2044
NoYes	Enterobacter aerogenes KCTC 2190
NoYes	Escherichia fergusonii ATCC 35469
NoYes	Escherichia coli 'BL21-Gold(DE3)pLysS AG'
NoYes	Enterobacter sp. R4-368
NoYes	Enterobacter sp. 638
NoYes	Enterobacter asburiae LF7a
NoYes	Enterobacter cloacae subsp. dissolvens SDM
NoYes	Citrobacter rodentium ICC168
NoYes	Azotobacter vinelandii DJ
NoYes	Pseudomonas sp. TKP
NoYes	Pseudomonas sp. UW4
NoYes	Pseudomonas brassicacearum subsp. brassicacearum NFM421
NoYes	Pseudomonas entomophila L48
NoYes	Pseudomonas syringae pv. tomato str. DC3000
NoYes	Pseudomonas stutzeri A1501
NoYes	Pseudomonas fulva 12-X
NoYes	Pseudomonas protegens Pf-5
NoYes	Pseudomonas fluorescens SBW25
NoYes	Pseudomonas mendocina ymp
NoYes	Pseudomonas aeruginosa UCBPP-PA14
NoYes	Pseudomonas sp. VLB120
NoYes	Psychrobacter sp. G
NoYes	Psychrobacter sp. PRwf-1
NoYes	Psychrobacter arcticus 273-4
NoYes	Psychrobacter cryohalolentis K5
NoYes	halophilic archaeon DL31
NoYes	Salinarchaeum sp. Harcht-Bsk1
NoYes	Halopiger xanaduensis SH-6
NoYes	Natrinema sp. J7-2
NoYes	Natrialba magadii ATCC 43099
NoYes	Halorubrum lacusprofundi ATCC 49239
NoYes	Haloquadratum walsbyi DSM 16790
NoYes	Halogeometricum borinquense DSM 11551
NoYes	Haloferax mediterranei ATCC 33500
NoYes	Haloferax volcanii DS2
NoYes	Halomicrobium mukohataei DSM 12286
NoYes	Halorhabdus utahensis DSM 12940
NoYes	Natronomonas pharaonis DSM 2160
NoYes	Haloarcula hispanica ATCC 33960
NoYes	Haloarcula marismortui ATCC 43049
NoYes	Halalkalicoccus jeotgali B3
NoYes	Halobacterium salinarum R1
NoYes	Halobacterium sp. NRC-1
NoYes	Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes	Theobroma cacao Matina 1-6 v0.9 - Cacao
NoYes	Hordeum vulgare 22 - Domesticated barley
NoYes	Oryza sativa ssp. Indica - Long-grained rice
NoYes	Chroococcidiopsis thermalis PCC 7203
NoYes	Chamaesiphon minutus PCC 6605
NoYes	Synechocystis sp. PCC 6803 substr. PCC-P
NoYes	Synechocystis sp. PCC 6803 substr. PCC-N
NoYes	Synechocystis sp. PCC 6803 substr. GT-I
NoYes	Synechocystis sp. PCC 6803
NoYes	Cyanobium gracile PCC 6307
NoYes	Dactylococcopsis salina PCC 8305
NoYes	Synechococcus sp. JA-2-3B'a(2-13)
NoYes	Synechococcus sp. JA-3-3Ab
NoYes	Synechococcus sp. CC9902
NoYes	Synechococcus sp. RCC307
NoYes	Synechococcus sp. CC9605
NoYes	Synechococcus sp. WH 8102
NoYes	Synechococcus sp. WH 7803
NoYes	Synechococcus sp. PCC 7002
NoYes	Synechococcus elongatus PCC 6301
NoYes	Prochlorococcus marinus str. NATL1A
NoYes	Prochlorococcus marinus str. MIT 9301
NoYes	Prochlorococcus marinus str. AS9601
NoYes	Prochlorococcus marinus subsp. pastoris str. CCMP1986
NoYes	Prochlorococcus marinus str. MIT 9215
NoYes	Prochlorococcus marinus str. MIT 9312
NoYes	Prochlorococcus marinus str. NATL2A
NoYes	Crinalium epipsammum PCC 9333
NoYes	Oscillatoria nigro-viridis PCC 7112
NoYes	Oscillatoria acuminata PCC 6304
NoYes	Arthrospira platensis NIES-39
NoYes	Cyanothece sp. PCC 7822
NoYes	Cyanothece sp. PCC 7425
NoYes	Cyanothece sp. PCC 7424
NoYes	Cyanothece sp. ATCC 51142
NoYes	Cyanothece sp. PCC 8801
NoYes	Cyanobacterium aponinum PCC 10605
NoYes	Cyanobacterium stanieri PCC 7202
NoYes	Gloeobacter kilaueensis Gloeobacter sp. JS
NoYes	Pleurocapsa minor Pleurocapsa sp. PCC 7327
NoYes	Stanieria cyanosphaera PCC 7437
NoYes	Calothrix parietina Calothrix sp. PCC 6303
NoYes	Cylindrospermum stagnale PCC 7417
NoYes	Anabaena cylindrica PCC 7122
NoYes	Saccharothrix espanaensis DSM 44229
NoYes	Amycolatopsis mediterranei RB
NoYes	Amycolatopsis mediterranei S699
NoYes	Amycolatopsis mediterranei S699
NoYes	Amycolatopsis orientalis HCCB10007
NoYes	Rhodococcus pyridinivorans SB3094
NoYes	Mycobacterium liflandii 128FXT
NoYes	Mycobacterium sp. KMS
NoYes	Mycobacterium sp. MCS
NoYes	Mycobacterium avium subsp. paratuberculosis MAP4
NoYes	Mycobacterium avium subsp. paratuberculosis K-10
NoYes	Mycobacterium gilvum Spyr1
NoYes	Mycobacterium smegmatis str. MC2 155
NoYes	Mycobacterium kansasii ATCC 12478
NoYes	Mycobacterium smegmatis JS623
NoYes	Leifsonia xyli subsp. cynodontis DSM 46306
NoYes	Clavibacter michiganensis subsp. sepedonicus
NoYes	Clavibacter michiganensis subsp. nebraskensis NCPPB 2581
NoYes	Thermus oshimai JL-2
NoYes	Thermus thermophilus JL-18
NoYes	Thermus thermophilus HB8
NoYes	Bacillus megaterium WSH-002
NoYes	Bacillus megaterium QM B1551
NoYes	Salinibacter ruber DSM 13855
NoYes	Echinicola vietnamensis DSM 17526
NoYes	Emticicia oligotrophica DSM 17448
NoYes	Nonlabens dokdonensis DSW-6
NoYes	Psychroflexus torquis ATCC 700755
NoYes	Bdellovibrio exovorus JSS
NoYes	Bdellovibrio bacteriovorus str. Tiberius
NoYes	Pandoraea pnomenusa 3kgm
NoYes	Ralstonia pickettii 12J
NoYes	Burkholderia sp. YI23
NoYes	Burkholderia sp. CCGE1001
NoYes	Burkholderia sp. KJ006
NoYes	Burkholderia pseudomallei MSHR305
NoYes	Burkholderia pseudomallei NCTC 13179
NoYes	Burkholderia pseudomallei BPC006
NoYes	Burkholderia pseudomallei 1026b
NoYes	Burkholderia pseudomallei MSHR346
NoYes	Burkholderia pseudomallei 668
NoYes	Burkholderia pseudomallei 1710b
NoYes	Burkholderia pseudomallei K96243
NoYes	Burkholderia mallei NCTC 10229
NoYes	Burkholderia mallei NCTC 10247
NoYes	Burkholderia mallei ATCC 23344
NoYes	Burkholderia lata
NoYes	Burkholderia ambifaria MC40-6
NoYes	Burkholderia cenocepacia MC0-3
NoYes	Burkholderia cenocepacia AU 1054
NoYes	Burkholderia cenocepacia J2315
NoYes	Burkholderia multivorans ATCC 17616
NoYes	Burkholderia cepacia GG4
NoYes	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
NoYes	Nitrosomonas sp. AL212
NoYes	Caulobacter crescentus CB15
NoYes	Phaeobacter gallaeciensis DSM 17395
NoYes	Phaeobacter gallaeciensis DSM 26640
NoYes	Octadecabacter antarcticus 307
NoYes	Octadecabacter arcticus 238
NoYes	Rhodobacter sphaeroides ATCC 17025
NoYes	Rhodospirillum rubrum ATCC 11170
NoYes	Gluconacetobacter diazotrophicus PAl 5
NoYes	Gluconobacter oxydans H24
NoYes	Micavibrio aeruginosavorus EPB
NoYes	Rhizobium tropici CIAT 899
NoYes	Rhizobium leguminosarum bv. trifolii WSM2304
NoYes	Rhizobium leguminosarum bv. trifolii WSM1325
NoYes	Candidatus Liberibacter solanacearum CLso-ZC1
NoYes	Candidatus Liberibacter americanus str. Sao Paulo
NoYes	Candidatus Liberibacter asiaticus str. gxpsy
NoYes	Rhodopseudomonas palustris DX-1
NoYes	Rhodopseudomonas palustris TIE-1
NoYes	Rhodopseudomonas palustris BisB18
NoYes	Rhodopseudomonas palustris CGA009
NoYes	Bradyrhizobium sp. S23321
NoYes	Bradyrhizobium sp. BTAi1
NoYes	Simiduia agarivorans SA1 = DSM 21679
NoYes	Aeromonas hydrophila ML09-119
NoYes	Vibrio fischeri ES114
NoYes	Vibrio sp. EJY3
NoYes	Vibrio parahaemolyticus BB22OP
NoYes	Vibrio alginolyticus NBRC 15630 = ATCC 17749
NoYes	Vibrio anguillarum Listonella anguillarum M3
NoYes	Vibrio nigripulchritudo VibrioScope
NoYes	Vibrio vulnificus CMCP6
NoYes	Vibrio vulnificus YJ016
NoYes	Vibrio cholerae LMA3984-4
NoYes	Vibrio cholerae M66-2
NoYes	Vibrio cholerae O395
NoYes	Vibrio cholerae IEC224
NoYes	Vibrio cholerae O1 str. 2010EL-1786
NoYes	Vibrio cholerae MJ-1236
NoYes	Vibrio cholerae O1 biovar El Tor str. N16961
NoYes	Shewanella sp. W3-18-1
NoYes	Shewanella sp. ANA-3
NoYes	Shewanella baltica BA175
NoYes	Shewanella baltica OS678
NoYes	Shewanella baltica OS117
NoYes	Shewanella baltica OS223
NoYes	Shewanella baltica OS195
NoYes	Shewanella baltica OS155
NoYes	Shewanella sp. MR-7
NoYes	Shewanella putrefaciens 200
NoYes	Glaciecola psychrophila 170
NoYes	Alteromonas macleodii str. 'Ionian Sea UM4b'
NoYes	Alteromonas macleodii str. 'Ionian Sea UM7'
NoYes	Alteromonas macleodii str. 'Ionian Sea U8'
NoYes	Alteromonas macleodii str. 'Ionian Sea U7'
NoYes	Alteromonas macleodii str. 'Ionian Sea U4'
NoYes	Alteromonas macleodii str. 'Aegean Sea MED64'
NoYes	Alteromonas macleodii str. 'English Channel 615'
NoYes	Alteromonas macleodii AltDE1
NoYes	Alteromonas macleodii str. 'English Channel 673'
NoYes	Alteromonas macleodii str. 'Balearic Sea AD45'
NoYes	Alteromonas macleodii str. 'Black Sea 11'
NoYes	Alteromonas macleodii ATCC 27126
NoYes	Alcanivorax dieselolei B5
NoYes	Thalassolituus oleivorans MIL-1
NoYes	Stenotrophomonas maltophilia D457
NoYes	Stenotrophomonas maltophilia JV3
NoYes	Stenotrophomonas maltophilia R551-3
NoYes	Xanthomonas citri subsp. citri Aw12879
NoYes	Xanthomonas campestris pv. vesicatoria str. 85-10
NoYes	Xanthomonas axonopodis pv. citrumelo F1
NoYes	Xanthomonas axonopodis Xac29-1
NoYes	Xanthomonas oryzae pv. oryzicola BLS256
NoYes	Xanthomonas oryzae pv. oryzae MAFF 311018
NoYes	Xanthomonas oryzae pv. oryzae KACC 10331
NoYes	Xanthomonas campestris pv. raphani 756C
NoYes	Xanthomonas campestris pv. campestris str. 8004
NoYes	Xanthomonas campestris pv. campestris str. ATCC 33913
NoYes	Spiribacter salinus M19-40
NoYes	Thioalkalivibrio nitratireducens DSM 14787
NoYes	Thioflavicoccus mobilis 8321
NoYes	Legionella pneumophila str. Paris
NoYes	Legionella pneumophila str. Lens
NoYes	Legionella pneumophila subsp. pneumophila LPE509
NoYes	Legionella pneumophila subsp. pneumophila str. Thunder Bay
NoYes	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
NoYes	Legionella pneumophila subsp. pneumophila
NoYes	Legionella pneumophila subsp. pneumophila
NoYes	Legionella pneumophila subsp. pneumophila ATCC 43290
NoYes	Legionella pneumophila 2300/99 Alcoy
NoYes	Proteus mirabilis BB2000
NoYes	Morganella morganii subsp. morganii KT
NoYes	Edwardsiella tarda C07-087
NoYes	Edwardsiella tarda FL6-60
NoYes	Rahnella aquatilis HX2
NoYes	Yersinia pseudotuberculosis PB1/+
NoYes	Yersinia pseudotuberculosis YPIII
NoYes	Yersinia pseudotuberculosis IP 32953
NoYes	Yersinia pestis biovar Microtus str. 91001
NoYes	Yersinia pestis A1122
NoYes	Yersinia pestis Z176003
NoYes	Yersinia pestis D182038
NoYes	Yersinia pestis D106004
NoYes	Yersinia pestis biovar Medievalis str. Harbin 35
NoYes	Yersinia pestis Nepal516
NoYes	Yersinia pestis Antiqua
NoYes	Yersinia pestis Angola
NoYes	Yersinia pestis CO92
NoYes	Yersinia pestis KIM10+
NoYes	Yersinia enterocolitica subsp. palearctica 105.5R(r)
NoYes	Yersinia enterocolitica subsp. palearctica Y11
NoYes	Serratia sp. AS13
NoYes	Serratia plymuthica S13
NoYes	Serratia plymuthica 4Rx13
NoYes	Serratia marcescens FGI94
NoYes	Serratia marcescens WW4
NoYes	Serratia liquefaciens ATCC 27592
NoYes	Dickeya dadantii Ech586
NoYes	Dickeya dadantii 3937
NoYes	Pectobacterium carotovorum subsp. carotovorum PCC21
NoYes	Pantoea ananatis LMG 5342
NoYes	Pantoea ananatis PA13
NoYes	Pantoea ananatis AJ13355
NoYes	Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
NoYes	Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)
NoYes	Buchnera aphidicola str. Bp (Baizongia pistaciae)
NoYes	Buchnera aphidicola str. Ua (Uroleucon ambrosiae)
NoYes	Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. 5A (Acyrthosiphon pisum)
NoYes	Buchnera aphidicola str. APS (Acyrthosiphon pisum)
NoYes	Erwinia pyrifoliae DSM 12163
NoYes	Cronobacter sakazakii CMCC 45402
NoYes	Cronobacter sakazakii SP291
NoYes	Cronobacter sakazakii ATCC BAA-894
NoYes	Raoultella ornithinolytica B6
NoYes	Shigella sonnei 53G
NoYes	Shigella flexneri 2002017
NoYes	Shigella flexneri 2a str. 2457T
NoYes	Shigella flexneri 2a str. 301
NoYes	Shigella dysenteriae 1617
NoYes	Shigella boydii Sb227
NoYes	Salmonella bongori N268-08
NoYes	Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980
NoYes	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
NoYes	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992
NoYes	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
NoYes	Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050
NoYes	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
NoYes	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
NoYes	Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1
NoYes	Salmonella enterica subsp. enterica serovar Newport str. SL254
NoYes	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. U288
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 798
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
NoYes	Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. CT18
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
NoYes	Salmonella enterica serovar Bovismorbificans genomics
NoYes	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189
NoYes	Salmonella enterica subsp. enterica serovar Agona str. 24249
NoYes	Salmonella enterica subsp. enterica serovar Agona str. SL483
NoYes	Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NoYes	Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. B182
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. 41578
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
NoYes	Salmonella enterica subsp. enterica serovar Pullorum str. S06004
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078
NoYes	Salmonella enterica subsp. enterica serovar Thompson str. RM6836
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
NoYes	Klebsiella oxytoca KCTC 1686
NoYes	Klebsiella pneumoniae CG43
NoYes	Klebsiella pneumoniae KCTC 2242
NoYes	Klebsiella pneumoniae 342
NoYes	Klebsiella pneumoniae subsp. pneumoniae 1084
NoYes	Klebsiella pneumoniae subsp. pneumoniae HS11286
NoYes	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
NoYes	Enterobacter aerogenes EA1509E
NoYes	Escherichia coli E24377A
NoYes	Escherichia coli E. coli PMV-1
NoYes	Escherichia coli JJ1886
NoYes	Escherichia coli LY180
NoYes	Escherichia coli APEC O78
NoYes	Escherichia coli O7:K1 str. CE10
NoYes	Escherichia coli O104:H4 str. 2009EL-2050
NoYes	Escherichia coli O104:H4 str. 2009EL-2071
NoYes	Escherichia coli O104:H4 str. 2011C-3493
NoYes	Escherichia coli NA114
NoYes	Escherichia coli P12b
NoYes	Escherichia coli str. 'clone D i2'
NoYes	Escherichia coli str. 'clone D i14'
NoYes	Escherichia coli UM146
NoYes	Escherichia coli 042
NoYes	Escherichia coli Xuzhou21
NoYes	Escherichia coli IHE3034
NoYes	Escherichia coli UMNK88
NoYes	Escherichia coli O83:H1 str. NRG 857C
NoYes	Escherichia coli ABU 83972
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli LF82
NoYes	Escherichia coli ED1a
NoYes	Escherichia coli IAI39
NoYes	Escherichia coli UMN026
NoYes	Escherichia coli 55989
NoYes	Escherichia coli S88
NoYes	Escherichia coli IAI1
NoYes	Escherichia coli W
NoYes	Escherichia coli W
NoYes	Escherichia coli DH1
NoYes	Escherichia coli DH1
NoYes	Escherichia coli ATCC 8739
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli SMS-3-5
NoYes	Escherichia coli SE15
NoYes	Escherichia coli SE11
NoYes	Escherichia coli APEC O1
NoYes	Escherichia coli O103:H2 str. 12009
NoYes	Escherichia coli UTI89
NoYes	Escherichia coli 536
NoYes	Escherichia coli HS
NoYes	Escherichia coli ETEC H10407
NoYes	Escherichia coli O55:H7 str. RM12579
NoYes	Escherichia coli O55:H7 str. CB9615
NoYes	Escherichia coli O26:H11 str. 11368
NoYes	Escherichia coli CFT073
NoYes	Escherichia coli O111:H- str. 11128
NoYes	Escherichia coli O127:H6 str. E2348/69
NoYes	Escherichia coli O157:H7 str. TW14359
NoYes	Escherichia coli O157:H7 str. EC4115
NoYes	Escherichia coli O157:H7 str. Sakai
NoYes	Escherichia coli O157:H7 str. EDL933
NoYes	Escherichia coli str. K-12 substr. MDS42
NoYes	Escherichia coli BW2952
NoYes	Escherichia coli str. K-12 substr. MG1655
NoYes	Escherichia coli str. K-12 substr. W3110
NoYes	Escherichia coli str. K-12 substr. DH10B
NoYes	Escherichia coli B str. REL606
NoYes	Enterobacter cloacae SCF1
NoYes	Enterobacter cloacae EcWSU1
NoYes	Enterobacter cloacae subsp. cloacae ENHKU01
NoYes	Enterobacter cloacae subsp. cloacae NCTC 9394
NoYes	Enterobacter cloacae subsp. cloacae ATCC 13047
NoYes	Azotobacter vinelandii CA6
NoYes	Azotobacter vinelandii CA
NoYes	Pseudomonas denitrificans ATCC 13867
NoYes	Pseudomonas syringae pv. phaseolicola 1448A
NoYes	Pseudomonas syringae pv. syringae B728a
NoYes	Pseudomonas stutzeri CCUG 29243
NoYes	Pseudomonas stutzeri DSM 4166
NoYes	Pseudomonas stutzeri RCH2
NoYes	Pseudomonas stutzeri ATCC 17588 = LMG 11199
NoYes	Pseudomonas monteilii SB3101
NoYes	Pseudomonas monteilii SB3078
NoYes	Pseudomonas putida HB3267
NoYes	Pseudomonas putida S16
NoYes	Pseudomonas putida BIRD-1
NoYes	Pseudomonas putida W619
NoYes	Pseudomonas putida ND6
NoYes	Pseudomonas protegens CHA0
NoYes	Pseudomonas poae RE*1-1-14
NoYes	Pseudomonas fluorescens F113
NoYes	Pseudomonas fluorescens A506
NoYes	Pseudomonas fluorescens R124
NoYes	Pseudomonas fluorescens Pf0-1
NoYes	Pseudomonas resinovorans NBRC 106553
NoYes	Pseudomonas mendocina NK-01
NoYes	Pseudomonas aeruginosa SCV20265
NoYes	Pseudomonas aeruginosa MTB-1
NoYes	Pseudomonas aeruginosa LES431
NoYes	Pseudomonas aeruginosa RP73
NoYes	Pseudomonas aeruginosa B136-33
NoYes	Pseudomonas aeruginosa PA1R
NoYes	Pseudomonas aeruginosa PA1
NoYes	Pseudomonas aeruginosa DK2
NoYes	Pseudomonas aeruginosa NCGM2.S1
NoYes	Pseudomonas aeruginosa M18
NoYes	Pseudomonas aeruginosa LESB58
NoYes	Pseudomonas aeruginosa PA7
NoYes	Pseudomonas aeruginosa PAO1
NoYes	Acinetobacter genomosp. 13TU RUH2624
NoYes	Acinetobacter johnsonii SH046
NoYes	Cycloclasticus zancles 7-ME
NoYes	Methanolobus psychrophilus R15
NoYes	Halovivax ruber XH-70
NoYes	Natrinema pellirubrum DSM 15624
NoYes	Natronococcus occultus SP4
NoYes	Natronobacterium gregoryi SP2
NoYes	Haloquadratum walsbyi C23
NoYes	Halorhabdus tiamatea SARL4B
NoYes	Natronomonas moolapensis 8.8.11
NoYes	Haloarcula hispanica N601
NoYes	Gadus morhua 69_1 - Atlantic cod
NoYes	Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes	Takifugu rubripes 69_4 - Torafugu
NoYes	Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes	Oryzias latipes 69_1 - Japanese medaka
NoYes	Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes	Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes	Danio rerio 69_9 - Zebrafish
NoYes	Arabidopsis thaliana 10 - Thale cress
NoYes	Lotus japonicus
NoYes	Malus x domestica - Apple
NoYes	Ricinus communis - Castor bean
NoYes	Nicotiana benthamiana 0.4.4
NoYes	Solanum pimpinellifolium A-1.0 - Currant tomato
NoYes	Solanum lycopersicum v2.3 - Tomato
NoYes	Phoenix dactylifera - Date palm
NoYes	Vibrio campbellii ATCC BAA-1116
NoYes	3_050719R (meta-genome)
NoYes	4_050719Q (meta-genome)
NoYes	5_050719P (meta-genome)
NoYes	Air microbial communities Singapore indoor air filters 1 (meta-genome)
NoYes	Air microbial communities Singapore indoor air filters 2 (meta-genome)
NoYes	Atta cephalotes fungus garden (ACEF) (meta-genome)
NoYes	Bath Hot Springs, planktonic community (meta-genome)
NoYes	Combined (meta-genome)
NoYes	Cyphomyrmex longiscapus fungus garden (meta-genome)
NoYes	Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)
NoYes	Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)
NoYes	Dump top (Dump top) (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)
NoYes	Fungus garden combined (combined) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)
NoYes	Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes
NoYes	Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)
NoYes	Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)
NoYes	Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)
NoYes	NCBI 2017_08 genome
NoYes	Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)
NoYes	Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)
NoYes	simHC - Simulated High Complexity Metagenome (meta-genome)
NoYes	simLC - Simulated Low Complexity Metagenome (meta-genome)
NoYes	simMC - Simulated Medium Complexity Metagenome (meta-genome)
NoYes	Sludge/Australian, Phrap Assembly (meta-genome)
NoYes	Sludge/US, Jazz Assembly (meta-genome)
NoYes	Sludge/US, Phrap Assembly (meta-genome)
NoYes	Soil microbial communities from Minnesota Farm (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)
NoYes	Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)
NoYes	STRING v9.0.5 (STRING)
NoYes	Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes	Uniprot 2018_03 genome
NoYes	Global Ocean Sampling Expedition (GOS)
NoYes	NCBI plasmid sequences (Plasmids)
NoYes	PDB chains (SCOP 1.75) (PDB)
NoYes	Protein Data Bank (all PDB sequenc)
NoYes	SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes	TargetDB (Targets)
NoYes	The Salmonella enterica Pan-genome (meta-genome)
NoYes	ALL (only advised for small superfamilies)

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Cryptochrome/photolyase, N-terminal domain alignments