SUPERFAMILY 1.75 HMM library and genome assignments server

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SRCR-like alignments in Pongo abelii 76_2

These alignments are sequences aligned to the 0042161 model.

Sophisticated options are available for refining alignments:


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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                    10              20                  30                   40     
                                     |               |                   |                    |     
d1p57a_               .....p-LYPVQVSSA....D..ARLMVFDKT..E....G....TWRLLCSSR..S........NAR.VAGLSCEEMG
ENSPPYP00000004818  ..ledk---RLRLVDGds..R..CAGRVEIYH..N....G....FWGTICDDG..W........DLS.DAHVVCRKLG
ENSPPYP00000003174  ....sl---ALRLVNGsd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTN.DANVVCRQLG
ENSPPYP00000004819  ..cies--GQLRLVNGgg..R..CAGRVEVYH..E....G....SWGTICDDS..W........DLS.DAHVVCRQLG
ENSPPYP00000003174  ....sl---ALRLVNGsd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTS.DANVVCRQLG
ENSPPYP00000003174  ....ss--LALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTN.DANVVCRQLG
ENSPPYP00000003174  ....sl---ALRLVNGsd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTN.DANVVCRQLG
ENSPPYP00000003174  ....sf---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTN.DANVVCRQLG
ENSPPYP00000003174  .....l---ALRLVNGgn..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTS.DANVVCKQLG
ENSPPYP00000003174  ....sl---TLRLVNGgd..R..CQGRVEVLY..G....G....SWGTVCDDS..W........DTS.DANVVCRQLG
ENSPPYP00000003174  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTN.DANVVCRQLG
ENSPPYP00000003174  ....sl---TLRLVNGs...Dm.CQGRVEVLY..R....G....SWGTVCDDS..W........DTN.DANVVCRQLG
ENSPPYP00000003174  ....sl---ALRLVNGgd..R..CQGRVEVLY..Q....G....SWGTVCDDN..W........DTN.DANVVCRQLG
ENSPPYP00000003174  .lrlvn------LNSSyg..L..CAGRVEIYH..G....G....TWGTVCDDS..W........TIQ.EAEVVCRQLG
ENSPPYP00000011794  .....r----LRLVSGph..R..CAGRLEVWH..G....G....RWGTVCDDG..W........DLR.DAAVACRELG
ENSPPYP00000004818  .....r----IRVRGGdt..E..CSGRVEIWH..A....G....SWGTVCDDS..W........DLA.EAEVVCQQLG
ENSPPYP00000019582  .....f--QELRLVGGps..R..CRGRLEVMH..G....G....SWGSVCDDD..W........DVV.DANVVCRQLG
ENSPPYP00000011794  ....er----LRLADGph..G..CAGRLEVWH..G....G....RWGTVCDDG..W........DLR.DAAVACRQLG
ENSPPYP00000019582  .....g---HLRLVNGah..R..CEGRVELYL..G....Q....RWGTVCDDA..W........DLR.AAGVLCRQLG
ENSPPYP00000004819  ....rk----IKLQEGpt..S..CSGRVEIWH..G....G....SWGTVCDDS..W........DLD.DAQVVCQQLG
ENSPPYP00000004819  ....nl---EMRLTNGg...Nm.CSGRIEIKF..Q....G....LWGTVCDDN..F........NID.HASVVCKQLE
ENSPPYP00000016776  ......----IRLVGG....SsvHEGRVELYH..A....G....QWGTVCDDQ..W........DDA.DAEVICRQLG
ENSPPYP00000004818  .....l---DLRLVGAds..P..CYGRLEVKY..Q....G....EWGTVCHDR..W........STR.NAAVVCKQLG
ENSPPYP00000016776  .....f---PVRLMDGen..K..KEGRVEVFI..N....G....QWGTICDDG..W........TDK.DAAVICRQLG
ENSPPYP00000019582  .....g---SVRLVGGa...Nl.CQGRVEILH..I....G....LWGTVCDDD..W........GLP.DAAVVCRQLG
ENSPPYP00000019582  ....gr----LRLVGGpg..P..CRGRVEVLH..A....G....GWGTVCDDD..W........DFA.DARVACREAG
ENSPPYP00000003179  ...vgg--------SG....R..YSGRVEILH..Q....G....AWGTVCDNL..W........DLN.EAEVVCRQLG
ENSPPYP00000020702  .....m----IRLVNGsg..P..HEGRVEVYH..D....R....RWGTVCDDG..W........DKK.DGDVVCRMLG
ENSPPYP00000000797  ..cedp--FDLRLVGG....NnlCSGRLEVLH..K....G....VWGSVCDDN..W........GEK.EDQVVCKQLG
ENSPPYP00000003688  ..caen--RALRLVDGgg..A..CAGRVEMLE..H....G....EWGSVCDDT..W........DLE.DAHVVCRQLG
ENSPPYP00000002955  .....t---KLRLVGPesk.P..EEGRLEVLH..Q....G....QWGTVCDDN..F........AIQ.EATVACRQLG
ENSPPYP00000020592  ...tpf--KKVRLVGGsg..P..HEGRVEILH..S....G....QWGTICDDR..W........EVR.VGQVVCRSLG
ENSPPYP00000004819  .....l---SLRLVDGvt..E..CSGRLEVRF..Q....G....EWGTICDDG..W........DSY.DAAVACKQLG
ENSPPYP00000023997  .....i---QLRLAGQkrk.H..SEGRVEVYY..D....G....QWGTVCDDD..F........SIH.AAHVVCRELG
ENSPPYP00000004818  .....l---ELRLVNGdg..P..CSGTVEVKF..Q....G....QWGTVCDDG..W........NTT.ASIVVCKQLG
ENSPPYP00000004819  .....e----LRLVDGen..K..CSGRVEVKV..Q....E....EWGTVCNNG..W........SME.AVSVICNQLG
ENSPPYP00000004818  ....lg----LRLVDGnn..S..CSGRVEVKF..Q....E....RWGTICDDG..W........NLN.TAAVVCRQLG
ENSPPYP00000004818  ....wg----LRLVGGsn..R..CSGRLEVYF..Q....G....RWGTVCDDG..W........NGN.AAAVVCNQLD
ENSPPYP00000004819  ...rep-----RLVGGdi..P..CSGRVEVKH..G....D....TWGSVCDSD..F........SLE.AASVLCRELQ
ENSPPYP00000004818  ....dl---ELRLVGGtn..R..CMGRVELKI..Q....G....RWGTICHHK..W........NNA.AADVVCKQLG
ENSPPYP00000016776  ......----IRLAGGkg..S..HEGRLEVYY..R....G....QWGTVCDDG..W........TEL.NTYVVCRQLG
ENSPPYP00000023997  .....l----VRLRGG....AyiGEGRVEVLK..N....G....EWGTVCDDK..W........DLV.SASVVCRELG
ENSPPYP00000013675  .....f-----RLAGFprk.P..YEGRVEIQR..A....G....EWGTICDDD..F........TLQ.AAHVLCRELG
ENSPPYP00000000797  .....g----VRLADGpg..H..CKGRVEVKH..Q....N....QWYIVCQTG..W........SLR.AAKVVCRQLG
ENSPPYP00000004819  .....y--TEIRLVNGkt..P..CEGRVELKT..L....G....AWGSLCNSH..W........DIE.DAHVLCQQLK
ENSPPYP00000003263  .....l--RCFRLVNGss..S..CEGHVELQV..Q....G....SWAPLCATH..W........DIA.DATVLCHQLN
ENSPPYP00000000797  ....ps---GVRLVGGlh..R..CEGRVEVEQ..K....G....QWGTVCDDG..W........DIK.DVAVVCRELG
ENSPPYP00000014274  ....ns--VSVRIVGS....S..NRGRAEVYY..S....G....TWGTICDDE..W........HNS.DATVFCRMLG
ENSPPYP00000004818  .....l---ELRLADGsn..N..CSGRVEVRI..H....E....QWWTICDQN..W........KNE.QALVVCKQLG
ENSPPYP00000004818  .....y--TDVRLVNGks..Q..CDGQVEVNV..L....G....HWGSLCDTH..W........DPE.DARVLCRQLS
ENSPPYP00000004818  ...rep-----RLVGAdi..P..CSGRVEVKH..A....D....TWRSVCDSD..F........SLH.AANVLCRELN
ENSPPYP00000004818  .....m---ELRLVGGss..R..CAGKVEVKI..Q....G....AVGILCANG..W........GMN.IAEVVCRQLE
ENSPPYP00000004819  .....l---ELRLRGGgs..R..CAGTVEVEI..Q....R....LLGKVCDRG..W........GLK.EADVVCRQLG
ENSPPYP00000016776  ....hg---SVRLRGGkn..E..FEGTVEVYA..R....G....VWGTVCSSH..W........DDS.DASVICHQLQ
ENSPPYP00000009763  ....dg---DMRLADGga..T..NQGRVESFY..R....G....QWGTVCDNL..W........EPDcIASVVCRDPG
ENSPPYP00000011794  ....pr----LRLADGph..G..CAGRLEVWH..G....G....RWGSVCDDA..W........DLR.DAAVACRELG
ENSPPYP00000003263  ....ht---EARLVGGeh..P..CAGRLEVRR..G....L....TWGTVCDAD..L........DLA.TAHVVCRELQ
ENSPPYP00000003688  ....eh--QSWRLTGGad..R..CEGQVEVHF..R....G....VWNTVCDSE..W........YSS.EAKVLCQSLG
ENSPPYP00000004818  .....t---ALRLYSEteteS..CAGRLEVFY..N....G....TWGSVGRRN..I........TTA.IAGIVCRQLG
ENSPPYP00000004819  ....fm---SLRLTSEaskeA..CAGRLEVFY..N....G....TWGSVGRSS..M........SET.TVGVVCRQLG
ENSPPYP00000013675  .....r----IRLSGGrs..Q..HEGRVEVQI..G....GpgplRWGLICGDD..W........GTL.EAMVACRQLG
ENSPPYP00000002955  .....n---QVRLAGGri..P..EEGLLEVQV..EvngvP....RWGSVCSEN..W........GLT.EAMVACRQLG
ENSPPYP00000013675  .....t----------....-..-EGLVEVRL..P....D....GWSQVCDKG..W........SAH.NSHVVCGMLG
ENSPPYP00000002955  ...spv----------....-..TEGAVEVKY..E....G....HWRQVCDQG..W........TMN.NSRVVCGMLG
ENSPPYP00000023997  .....t----------....-..-EGYVEVKE..G....K....TWKQICDKH..W........TAK.NSRVVCGMFG
ENSPPYP00000012784  ......EYRCVRVSGQ....N..AVLQV--FT..A....A....SWKTMCSDD..W........KGH.YANVACAQLG
ENSPPYP00000016746  gkfsvs------LKHGnt..D..SEGIVEVKLvdQ....D....KTMFICKSS..W........SMR.EANVACLDLG
ENSPPYP00000004490  .....l--GCVRFDWD....K..SLLKIYSGS..S....H....QWLPICSSN..W........NDS.YSEKTCQQLG
ENSPPYP00000003688  .....e-RLPVRLTNGss..S..CSGTVEVRL..E....A....SWEPACGAL..W........DSR.AAEAVCRALG
ENSPPYP00000003687  ..dfqa-----RLTRSns..K..CQGQLEVYI..K....D....RWHMVCSQS..WgrssnqweDPN.QASKVCQRLN
ENSPPYP00000004453  .....v---SFRINSE....D..FLLEVQVRD..R....P....GWLLVCHEG..W........SPT.LGLQICWSLG
ENSPPYP00000013675  .....e--ACVRLKGGah..P..GEGRVEVL-..A....S....TWGTVCDRK..W........DLH.AAS-VCRELG
ENSPPYP00000011026  .....l--YPVQVSSA....D..ARLMVFDKT..E....G....TWRLLCSSR..S........NAR.VAGLSCEEMG
ENSPPYP00000004493  .....a--VAVRLSKD....R..STLQVLDPA..T....G....NWFSACFDN..F........TEA.LAETACRQMG
ENSPPYP00000003263  .....l----------....-..--------H..G....G....AWGTVCDDA..W........DLR.DAHVVCRQLG
ENSPPYP00000003687  ..qpkv---QSRLVGG....SsiCEGTVEVRQ..G....A....QWAALCDSSsfR........SSL.RWEEVCREQQ
ENSPPYP00000012766  .....n--RCVRLYGP....N..FILQVYSSQ..R....K....SWHPVCQDD..W........NEN.YGRAACRDMG
ENSPPYP00000003263  .....a----LRLREGqs..R..CDGRVEVSL..D....G....VWGRVLDDA..W........DLR.GAGVVC----
ENSPPYP00000002955  ......----------....-..---------..-....-....---------..-........---.----------


                         50                       60        70        80                  90        
                          |                        |         |         |                   |        
d1p57a_               FLRALTHSELDVR...............TAGAAGTSGFFCVDEGRLPHTQRLLEV..........ISVCD....CPRG
ENSPPYP00000004818  CGVALNATV---S...............AHFGEGSGPIWLDDLNCTGTESHLWQCpsrg......WGQHD....CRHK
ENSPPYP00000003174  CGWAMSAPG---N...............ARFGRGSGPIVLDDVRCSGNESYLWSCphng......WLTHN....CGHG
ENSPPYP00000004819  CGEAINATG---S...............AHFGEGTGPIWLDEVKCNGKESRIWQChshg......WGQQN....CRHK
ENSPPYP00000003174  CGWAMSAPG---N...............ARFGQGSGPIVLDDVRCSGNESYLWSCphng......WLTHN....CGHG
ENSPPYP00000003174  CGWATSAPG---N...............ARFGQGSGPIVLDDVRCSGRESYLWSCphng......WLTHN....CGHG
ENSPPYP00000003174  CGWATSAPG---N...............ARFGRGSGPIVLDDVRCSGRESYLWSCphng......WLSHN....CGHG
ENSPPYP00000003174  CGWATSAPG---N...............ARFGQGSGPIVLDDVRCSGRESYLWSCphng......WLTHN....CGHR
ENSPPYP00000003174  CGWVMSAPG---N...............ARFGQGSGPIVLDDVRCSGHESYLWSCphng......WLSHN....CGHG
ENSPPYP00000003174  CGWATSAPG---N...............ARFGQGSGPIVLDDVRCSGYESYLWSCphng......WLSHN....CQHS
ENSPPYP00000003174  CGWATSAPG---N...............ARFGQGSGPIVLDDVRCSGQESYLWSCpnng......WLSHN....CGHG
ENSPPYP00000003174  CGWATSASG---N...............ARFGQGSGPIVLDDVRCSGHESYLWNCphng......WLTHN....CGHH
ENSPPYP00000003174  CGWATSAPG---N...............ARFGRGSGPIVLDDVRCSGRESYLWSCphng......WLSHN....CGHS
ENSPPYP00000003174  CGRAVSALG---N...............AYFGSGSGPITLDDVECSGTESTLWQCrnrg......WFSHN....CNHH
ENSPPYP00000011794  CGGALAAPG---G...............ARFGPGAGPVWMDDVGCGGGEQALRDCprsp......WGRSN....CDHS
ENSPPYP00000004818  CGSALAAMR---E...............ASFGQGTGTIWLDDMQCKGNESFLWDChakp......WGQSD....CGHK
ENSPPYP00000019582  CGLALPVPR---P...............LAFGQGRGPILLDNVECRGQEAALSECgsrg......WGVHN....CFHY
ENSPPYP00000011794  CGGALAAPG---G...............AFFGEGAGPVWLSELACRGNEGQLGLC..........HHRGWkahiCSHE
ENSPPYP00000019582  CGQALAAPG---E...............AHFGPGRGPILLDNVKCRGEESALLLCshir......WDAHN....CDHS
ENSPPYP00000004819  CGPALKAFK---E...............AEFGPGTGPIWLNEVKCKGNESSLWDCparr......WGHSD....CGHK
ENSPPYP00000004819  CGSAVSFSG---S...............SNFGEGSGPIWFDDLICNGNESALWNCkhqg......WGKHN....CDHA
ENSPPYP00000016776  LSGIAKAWH---Q...............AYFGEGSGPVMLDEVRCTGNELSIEQCpkss......WGEHN....CGHK
ENSPPYP00000004818  CGKPMHVFG---M...............TYFKEASGPIWLDDVSCIGNESNIWDCkhsg......WGKHN....CIHR
ENSPPYP00000016776  YKGPARART---M...............AYFGEGKGPIHVDNVRCTGNERSLADCikqd......IGRHN....CRHS
ENSPPYP00000019582  CGAAMAATT---N...............AFFGYGTGHILLDNVHCEGGEPRLAACqslg......WGVHN....CGHH
ENSPPYP00000019582  CGPALGATG---L...............GHFGYGRGPVLLDNVGCAGTEARLSDCfhlg......WGQHN....CGHH
ENSPPYP00000003179  CGRAMSALG---K...............AHFGPGSGDIFLDNLQCAGVERYLGQCahsg......WSEHN....CGHH
ENSPPYP00000020702  FRGVEEVYR---T...............ARFGQGTGRIWMDDVACKGTEETIFRCsfsk......WGVTN....CGHA
ENSPPYP00000000797  CGKSLSPSFKD-R...............KYYGPGVGRIWLDNVRCSGEEQSLEQCqhrf......WGFHD....CTHQ
ENSPPYP00000003688  CGWAVQALP---G...............LHFTPGRGPIHRDQVNCSGAEAYLWDCpgl.......PGQHY....CGHK
ENSPPYP00000002955  FEAALTWAH---S...............AKYGQGEGPIWLDNVRCVGTESSLDQCrsng......WGVSD....CSHS
ENSPPYP00000020592  YPGVQAVHK---A...............AHFGQGTGPIWLNEVFCFGRESSIEECkirq......WGTRA....CSHS
ENSPPYP00000004819  CPTTVTAIG---R...............VNASEGFGHIWLDSVSCQGHEPAVWQCkhhe......WGKHY....CNHN
ENSPPYP00000023997  YVEAKSWTA---S...............SSYGKGEGPIWLDNLHCTGNEATLAACtsng......WGVTD....CKHT
ENSPPYP00000004818  CPFSFTMFR---S...............GQAVTRHGKIWLDDVSCYGNESALWECqhre......WGSHN....CNHG
ENSPPYP00000004819  CPTAIKATG---W...............ANSSAGSGRIWMDHVSCRGNESALWDCkhdg......WGKHSn...CTHQ
ENSPPYP00000004818  CPSSFISSGVVNS...............APFAVLR-PIWLDDILCQGNELALWNCrhrg......WGNHD....CSHN
ENSPPYP00000004818  CPSSIIGMG---L...............GNASTGYGKIWLDDVSCDGDESDLWSCrnsg......WGNND....CSHS
ENSPPYP00000004819  CGTVVSILG---G...............AHFGEGNGQIWAEEFQCEGHESHLSLC..........PVAPRpegtCSHS
ENSPPYP00000004818  CGTALHFAG---L...............PHLQSGSDIVWLDGVSCSGNESFLWDCrhsg......TVNFD....CLHQ
ENSPPYP00000016776  FKFGKQASA----...............NHFEESTGPIWLDDVSCSGKETRFLQCsrrq......WGRHD....CSHR
ENSPPYP00000023997  FGSAKEAVT---G...............SRLGQGIGPIHLNEIQCTGNEKSIIDCkfn.......TESQG....CNHE
ENSPPYP00000013675  FTEATGWTH---S...............AKYGPGTGRIWLDNLSCSGTEQSVTECasrg......WGNSD....CTHD
ENSPPYP00000000797  CGRAILTQKR--C...............NKHAYGQRPIWLSQMSCSGREATLQDCpsgp......WGKNT....CNHD
ENSPPYP00000004819  CGVALSTPG---G...............AHFGKGNGQVWRHMFHCTGTEQHMGDCpvta......LGASL....CPSE
ENSPPYP00000003263  CGNAVAAPR---G...............GHFGDGDAAVWPDAFHCEGTEPHLWNCpvst......LGAPA....CAPG
ENSPPYP00000000797  CGAASGTPSGILY...............EPPAEKEQKVLIQSVSCTGTEDTLAQCeq........EEVYD....CSHD
ENSPPYP00000014274  YSKGRALYK----...............--VGAGTGQIWLDNVQCRGMESTLWSCskns......WGYHD....CSHE
ENSPPYP00000004818  CPFNVFGSR---R...............AKPSNEARDIWINSISCTGNESALWDC..........TYDGKakrtCFRR
ENSPPYP00000004818  CGTALSTTG---G...............KYIGERSGRVWGHRFHCLGNESLLDNCqmtv......LGAPP....CIHG
ENSPPYP00000004818  CGDAISLSV---G...............DHFGKGNGLTWAEKFQCEGSETHLALC..........PAVQHpedtCIHS
ENSPPYP00000004818  CGSAIRVSR---E...............PHFTERTLHILMSNSGCTGGEASLWDCirwe......WKQTA....CRLN
ENSPPYP00000004819  CGSALKTSY---Q...............VYSKIQATNTWLFLSSCNGNETSLWDCknwq......WGGLT....CDHY
ENSPPYP00000016776  LGGKGIAKQ---T...............PFSGLGLIPIYWSNVRCQGDEENILLCekdi......WQGGV....CPQK
ENSPPYP00000009763  LLRTATQRL--LP...............SAVSTGSGPIMLDEVQCMGTEASLADCkslg......WLKSN....CRHE
ENSPPYP00000011794  CGGALAAPG---G...............AFFGEGSKAIILDDLRCRGN-------..........-----....----
ENSPPYP00000003263  CGAVVSTPE---G...............ARFCRGSGPVWTETSRCAGNESLLFLHpr........GRG-Sp...CGPG
ENSPPYP00000003688  CGTAVEWPKGLPH...............SLSGRMY-------YSCNGEELTLSNCs.........WRFNNsnl.CSQS
ENSPPYP00000004818  CGENGVVSL---A...............PLSKTGSGFMWVDDIQCPKTHISLWQC..........LSAPWeqriSSPA
ENSPPYP00000004819  CADKGKINP---A...............SLDKAMSIPMWVDNVQCPKGPDMLWQC..........PSSPWekrlASPS
ENSPPYP00000013675  LGYANHGLQETWY...............WDSGNIT-EVVMSGVRCTGTELSLDQC..........AHHGThit.CKRT
ENSPPYP00000002955  LGFAIHAYKETWY...............WSGTPRAQEVVMSGVRCSGTELALQQCqr........HGPVH....CSHG
ENSPPYP00000013675  FPSEKRVNAAFYR...............LLAQRQQHSFGLHGVACVGTEAHLSLCsle.......FYRANdtarCPGG
ENSPPYP00000002955  FPSEVPVDSHYYRkvwdlkmrdpksr..LKSLTNKNSFWIHQVTCLGTEPHMANCqvqvaparg.KLRPA....CPGG
ENSPPYP00000023997  FPGERTYNAKVYK...............MFASRRKQRYWPFSMDCTGTEAHISSCklgpqvsldpMKNVT....CENG
ENSPPYP00000012784  FPSYVSSDNLRLS...............SLEGQFREEFVSINHLLPDDKVTALHHsv........YVREG....CASG
ENSPPYP00000016746  FQQGADTQRR--F...............KLSNLSINSTECLHVHCRGLETSLAECtf........TKRRT....MGYQ
ENSPPYP00000004490  FKSAYRTTEVAHR...............DFANSFS---------ILRYNSTIQES..........LHRSE....CPSQ
ENSPPYP00000003688  CGGAEAASQLAPPtpklppppaagntsaA---ANATLAGAPALLCSGAELQLCEV..........VEHAC....RSDG
ENSPPYP00000003687  CGVPLSLGPFLVT...............YTP--------QSSIICYGQLGSFSNC..........SHSRNdm..CHS-
ENSPPYP00000004453  HLRLTHHKGVNLT...............DIKLSRSQEFAQLSPRLGGFLEEAWQP..........--RNN....CTSG
ENSPPYP00000013675  FGSAREALS---G...............ARMGQGNLP------------------..........-----....----
ENSPPYP00000011026  FLRALTHSELDVR...............TAGANGTSGFFCVDEGRLPHTQRLLEV..........ISVCD....CPRG
ENSPPYP00000004493  YSSKPTFRA---V...............EIGPDQD----LDVVEITENSQELHVR..........NSSGP....CLSG
ENSPPYP00000003263  CGRALSLGG----...............---------------------------..........-----....----
ENSPPYP00000003687  CGGVNSYRVLDTG...............DPTSRGLSCPH----------QKLSQC..........HELCEr...NSYC
ENSPPYP00000012766  YCG----------...............---------------------------..........-----....----
ENSPPYP00000003263  -------------...............---------------------------..........-----....----
ENSPPYP00000002955  -------------...............---------------RCRGYERTLSDCpale......GSQNG....CQHE


                            100       110      
                              |         |      
d1p57a_               RF...LAAICQDCGRRK--lp....
ENSPPYP00000004818  ED...AGVICSE-------ftalr.
ENSPPYP00000003174  ED...AGVICSD-------tlpt..
ENSPPYP00000004819  ED...AGVICSE-------fmsl..
ENSPPYP00000003174  ED...AGVICS--------a.....
ENSPPYP00000003174  ED...AGVICS--------a.....
ENSPPYP00000003174  ED...AGVICSG-------p.....
ENSPPYP00000003174  ED...AGVICS--------at....
ENSPPYP00000003174  ED...AGVICSA-------aq....
ENSPPYP00000003174  ED...AGVICS--------a.....
ENSPPYP00000003174  ED...AGVICSG-------p.....
ENSPPYP00000003174  ED...AGVICS--------......
ENSPPYP00000003174  ED...AGVICS--------......
ENSPPYP00000003174  ED...AGVICSG-------nql...
ENSPPYP00000011794  ED...AGLVCTG-------pa....
ENSPPYP00000004818  ED...AGVRCSG-------qs....
ENSPPYP00000019582  ED...VAVLCD--------eflp..
ENSPPYP00000011794  ED...AGVVCAG-------qr....
ENSPPYP00000019582  ED...ASVLCQP-------......
ENSPPYP00000004819  ED...AAVNCTD-------ip....
ENSPPYP00000004819  ED...AGVICSK-------ga....
ENSPPYP00000016776  ED...AGVSCTP-------l.....
ENSPPYP00000004818  ED...VIVTCSG-------na....
ENSPPYP00000016776  ED...AGVIC---------......
ENSPPYP00000019582  ED...AGALCAG-------l.....
ENSPPYP00000019582  ED...AGALCAG-------p.....
ENSPPYP00000003179  ED...ASVICSD-------a.....
ENSPPYP00000020702  ED...ASVTC---------n.....
ENSPPYP00000000797  ED...VAVICSG-------qy....
ENSPPYP00000003688  ED...AGVVCSE-------hq....
ENSPPYP00000002955  ED...VGVICHP-------rr....
ENSPPYP00000020592  ED...AGVTCT--------......
ENSPPYP00000004819  ED...AGVTCSD-------g.....
ENSPPYP00000023997  ED...VGVVCSD-------kr....
ENSPPYP00000004818  ED...VGVNCYG-------e.....
ENSPPYP00000004819  QD...AGVTCSD-------g.....
ENSPPYP00000004818  ED...VTLTCYD-------s.....
ENSPPYP00000004818  ED...VGVICSD-------a.....
ENSPPYP00000004819  RD...VGVVCSR-------y.....
ENSPPYP00000004818  ND...VSVICSD-------ga....
ENSPPYP00000016776  ED...VSIACYP-------......
ENSPPYP00000023997  ED...AGVRCN--------tp....
ENSPPYP00000013675  ED...AGVICKD-------qr....
ENSPPYP00000000797  ED...TWVECED-------p.....
ENSPPYP00000004819  QV...ASVICSG-------nqs...
ENSPPYP00000003263  NS...ASAVCSG-------lph...
ENSPPYP00000000797  ED...AGASCE--------np....
ENSPPYP00000014274  ED...AGVECS--------......
ENSPPYP00000004818  SD...AGVICSD-------k.....
ENSPPYP00000004818  NI...VSVICTG-------s.....
ENSPPYP00000004818  RE...VGVVCSR-------yt....
ENSPPYP00000004818  ME...ASLICS--------ah....
ENSPPYP00000004819  EE...AKITCS--------ah....
ENSPPYP00000016776  MA...AAVTCS--------......
ENSPPYP00000009763  RD...AGVVCTN-------etr...
ENSPPYP00000011794  --...--------------......
ENSPPYP00000003263  RD...AGLRC---------......
ENSPPYP00000003688  LA...ARVLCSA-------sr....
ENSPPYP00000004818  EE...TWITCED-------r.....
ENSPPYP00000004819  EE...TWITC---------......
ENSPPYP00000013675  ETrftAGVICSE-------tasd..
ENSPPYP00000002955  GGrflAGVSCMD-------sapdlv
ENSPPYP00000013675  GP...AVVSCVP-------......
ENSPPYP00000002955  MH...AVVSCV--------agprfr
ENSPPYP00000023997  LP...AVVSCVP-------......
ENSPPYP00000012784  HV...VTLQCTACGHR---......
ENSPPYP00000016746  DL...ADVVCY--------tqk...
ENSPPYP00000004490  RY...ISLQCSHCGLR---......
ENSPPYP00000003688  RR...ARVTCA--------e.....
ENSPPYP00000003687  --...LGLTCLE-------pqktt.
ENSPPYP00000004453  QV...VSLRCSECGAR---p.....
ENSPPYP00000013675  --...--------------y.....
ENSPPYP00000011026  RF...LATICQDCGRR---k.....
ENSPPYP00000004493  SL...VSLHCLACG-----es....
ENSPPYP00000003263  --...--------------rplrs.
ENSPPYP00000003687  KK...VFVTCE--------gpn...
ENSPPYP00000012766  --...--------------vnlnsr
ENSPPYP00000003263  --...--------------t.....
ENSPPYP00000002955  ND...AAVRC---------n.....


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Model: 0042161 (list models)
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Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Canis familiaris 58 (pseudogenes) - Dog
NoYes   Danio rerio 58 (pseudogenes) - Zebrafish
NoYes   Gallus gallus 58 (pseudogene) - Chicken
NoYes   Homo sapiens 58 (pseudogenes) - Human
NoYes   Mus musculus 56 (pseudogenes) - House mouse
NoYes   Pan troglodytes 58 (pseudogenes) - Chimpanzee
NoYes   Rattus norvegicus 58 (pseudogenes) - Norway rat
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Saccoglossus kowalevskii v3.0
NoYes   Petromyzon marinus 76_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Lepisosteus oculatus 76 - Spotted gar
NoYes   Gadus morhua 76_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 76_4 - Torafugu
NoYes   Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes   Oryzias latipes 76_1 - Japanese medaka
NoYes   Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes   Poecilia formosa 76 - Amazon molly
NoYes   Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes   Astyanax mexicanus 76 - Mexican tetra
NoYes   Danio rerio 76_9 - Zebrafish
NoYes   Oikopleura dioica
NoYes   Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 76 - Vase tunicate
NoYes   Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes   Adineta vaga
NoYes   Octopus bimaculoides 280
NoYes   Crassostrea gigas 22 - Pacific oyster
NoYes   Lottia gigantea - Owl limpet
NoYes   Helobdella robusta
NoYes   Capitella sp. I
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Daphnia pulex - Common water flea
NoYes   Strigamia maritima 22
NoYes   Sarcoptes scabiei
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Pristionchus pacificus
NoYes   Meloidogyne hapla
NoYes   Onchocerca volvulus 22
NoYes   Brugia malayi WS250 - Agent of lymphatic filariasis
NoYes   Caenorhabditis japonica
NoYes   Caenorhabditis brenneri
NoYes   Caenorhabditis remanei
NoYes   Caenorhabditis elegans 76_235 - Roundworm
NoYes   Caenorhabditis briggsae 2
NoYes   Trichinella spiralis 22
NoYes   Hymenolepis microstoma
NoYes   Echinococcus multilocularis
NoYes   Echinococcus granulosus
NoYes   Taenia solium - Pork tapeworm
NoYes   Schistosoma mansoni
NoYes   Mnemiopsis leidyi - Sea walnut
NoYes   Acropora digitifera v1.0
NoYes   Nematostella vectensis 1.0 - Starlet sea anemone
NoYes   Hydra vulgaris
NoYes   Amphimedon queenslandica
NoYes   Trichoplax adhaerens
NoYes   Chlorella variabilis sp. NC64A
NoYes   Volvox carteri f. nagariensis
NoYes   Volvox carteri v199
NoYes   Chlamydomonas reinhardtii 4.0
NoYes   Bigelowiella natans CCMP2755 22
NoYes   Cyanophora paradoxa
NoYes   Aureococcus anophagefferens
NoYes   Cryptosporidium hominis
NoYes   Cryptosporidium muris
NoYes   Cryptosporidium parvum Iowa II
NoYes   Neospora caninum
NoYes   Toxoplasma gondii VEG
NoYes   Toxoplasma gondii ME49
NoYes   Toxoplasma gondii GT1
NoYes   Babesia bovis T2Bo
NoYes   Theileria parva
NoYes   Theileria annulata
NoYes   Plasmodium falciparum 3D7
NoYes   Plasmodium vivax SaI-1 7.0
NoYes   Plasmodium knowlesi strain H
NoYes   Plasmodium yoelii ssp. yoelii 1
NoYes   Plasmodium chabaudi
NoYes   Plasmodium berghei ANKA
NoYes   Symbiodinium minutum clade B1 v1.2
NoYes   Guillardia theta CCMP2712 v1.0
NoYes   Emiliania huxleyi CCMP1516
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Ascaris suum Victoria/Ghent - Pig roundworm
NoYes   Caenorhabditis elegans WormBase WS218 - Roundworm
NoYes   Neospora caninum Nc-Liverpool 6.2
NoYes   Plasmodium falciparum HB3
NoYes   Plasmodium falciparum Dd2
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Petromyzon marinus 69_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Gadus morhua 69_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 69_4 - Torafugu
NoYes   Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes   Oryzias latipes 69_1 - Japanese medaka
NoYes   Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes   Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes   Danio rerio 69_9 - Zebrafish
NoYes   Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 69 - Vase tunicate
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Caenorhabditis elegans 69_215 - Roundworm
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   Loa loa v3.3 - Eye worm
NoYes   Wuchereria bancrofti v1.0 - Agent of lymphatic filariasis
NoYes   NCBI 2017_08 genome
NoYes   Protozoadb 2010_08 (Protozoadb)
NoYes   Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)
NoYes   Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)
NoYes   Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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