SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Integrin domains alignments in Nomascus leucogenys 76_1.0

These alignments are sequences aligned to the 0047691 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                                                                    
                                                                                                    
d1jv2a2               ..............................................................................
ENSNLEP00000015048  vqveirgvshppqivlpihnwepeeephkeeevgplvehiyelhnigpstisdtilevgwpfsardefllyifhiqtl
ENSNLEP00000000204  aeaqvelrgnsfpaslvvaaeegereqnsldswgpkvehtyelhnngpgtvnglhlsihlpgqsqpadllyildiqpq
ENSNLEP00000006814  elllsvsgvakpsqvyfggtvvgeqamksedevgslieyefrvinlgkpltnlgt.......................
ENSNLEP00000021413  qaqvtlngvskpeavlfpvsdwhprdqpqkeedlgpavhhvyelisqgpssisqgvlelscpqalegqqllyvtrvtg
ENSNLEP00000007885  pvitvnaglevypsilnqdnktcslpgtalkvscfnvrfclkadgkgvlprklnfq......................
ENSNLEP00000015048  pvvtvdaqlllhpviinlenktchvpdsmtsaacfslrvcasvtgqsisnpl..........................
ENSNLEP00000010846  tlqtslsmvnhrlqsffggtvmgesgmktvqdvgsslkyefqvgpmgeglvglgtlvlglewpyevsngkwllyptei
ENSNLEP00000021413  pivsasasltifpamfnpeerscslegnpvacinlsfclnasgkhvadsigftvelqldwqkqkggvrralfl.....
ENSNLEP00000013350  ydaeihltrstninfyeissdgnvpsivhsfedvgpkfifslkvttgsvpvsmatviihipqytkeknplmyltgvqt
ENSNLEP00000007885  laaveirgvsspdhiflpipnwehkenpeteedvgpvvqhiyevcmsepvergttklplkkkilcnfyisslqttekn
ENSNLEP00000021371  ielplsiagmaipqqlffsgvvrgeramqserdvgskvkye.....................................
ENSNLEP00000015048  ..............................................................................
ENSNLEP00000007885  ..............................................................................
ENSNLEP00000000204  pvvkasvqllvqdslnpavkscvlpqtktpvscfniqmcvgatghnipqklslnaelqldrqkprqgrrv........
ENSNLEP00000007665  pvviveaslshpesvnrtkfdcvengwpsvcmdltlcfsykgkevpgyivlly.........................
ENSNLEP00000000204  ..............................................................................
ENSNLEP00000013222  vavvkvtmnfepnkvniqkknchmegketvcinatvcfdvklkskedtiyeadlqyrvtldslrqisrsffsgtqerk
ENSNLEP00000005694  kirskvelevrdlpeels............................................................
ENSNLEP00000006814  pviniqktitvtpnridlrqktacgapsgiclqvkscfeytanpagynpsisivgtleaekerrksglssrvqfrnqg
ENSNLEP00000021413  ..............................................................................
ENSNLEP00000006205  pvitvdvsiflpgsinitapqchdgqqpvnclnvttcfsfrgkhvpgeiglnyvlmadvakkekgqlprv........
ENSNLEP00000000814  sirskvelsvwdqpedlnlfftatcqdgvsypg.............................................
ENSNLEP00000016139  pvvqikaslhfeptkinifhrdckrsgrdatclaaflcftpiflaphfqtttvgirynatmderrytprahldeggdr
ENSNLEP00000019789  ..............................................................................
ENSNLEP00000019789  pvlwvqvsmkfipaeiprsvfecreqvvsdqilgqssiclyidtssknllrsrdlqssvtldlaldpgrlspratf..
ENSNLEP00000019802  pvlkvgvamrfspvevakavyrcweerpsaleagdatvcltiqkssldqlgdirssvrfdlaldpgrltsraifnetk
ENSNLEP00000019802  ..............................................................................
ENSNLEP00000006205  d.............................................................................
ENSNLEP00000007665  n.............................................................................
ENSNLEP00000006814  ..............................................................................
ENSNLEP00000007665  yevkltvhgfvnptsfvygsndenepetcmve..............................................
ENSNLEP00000013350  ..............................................................................
ENSNLEP00000021501  vqlimdaynslsstvtlehsslppgvrisyesqcegpekregkaedrgrcnhvr........................
ENSNLEP00000023995  vqlimdaynslsstvtlehsslppgvrisyesqcegpekregkaedrgrcnhvr........................
ENSNLEP00000019764  pvlrvkaimefnprevarnvfecndqvvkgkeagevrvclhvqkstrdrltegqiqsvvtydlaldsgrthsravfne
ENSNLEP00000001972  lrsevelevlgdteglnlsftaicnngtlfqh..............................................
ENSNLEP00000013222  k.............................................................................
ENSNLEP00000019229  pvvdvvtlmsfspaeipvhe..........................................................
ENSNLEP00000022034  pksavgtlsanssnviqliidaynslssevile.............................................
ENSNLEP00000010846  ..............................................................................
ENSNLEP00000016139  ..............................................................................
ENSNLEP00000010846  pvinivhktlvarpavldpalctatscvqvelcfaynqsagnpnyrrnitlaytl.......................
ENSNLEP00000020249  evkvqlenqvqgvyfnitaicpdgsrkpgtegcrnvtsndev....................................
ENSNLEP00000013222  kyevglqfyssaseyhisiaanetvpeiinstedigneinifylirksgpfpmpelklsisfpnmtsngypvlyptgl
ENSNLEP00000020979  ..............................................................................
ENSNLEP00000002952  vfldhnalpdtlkvtydsfcsngvthrnqprgdcdgvqinvpi...................................
ENSNLEP00000013350  advaieasftpekitllnknaqiilklcfsakfrptkqnnqvaivynitldadgfssrvtsrglfkennerclqknm.
ENSNLEP00000021371  pilhvshevsiaprsidleqpncagghsvcvdlrvcfsyiavpssysptv............................
ENSNLEP00000006205  evdtsitgimsptsfvygesvdaanfiqlddlechfqpi.......................................
ENSNLEP00000019789  vamhryqvnnlgqrdlpvsinfwvpvelnqeavwmdvevshpqnpslw..............................
ENSNLEP00000016139  slshyevkpnssleryngigppfscifriqnlglfpihgmmmkitipiatrsgnrllklrdflthqantscniwgnst
ENSNLEP00000019764  vmqhqy........................................................................
ENSNLEP00000019229  ap............................................................................
ENSNLEP00000019802  aehryrvnnlsqrdlaisinfwvpvllngvavwdvvmeapsqslpcvserkppqhsdfltqisrspmldcsiagclrf
ENSNLEP00000020979  pvvrlkvsmaftpstlpigfn.........................................................
ENSNLEP00000001972  sqveilknkplsvgrqknssdivqiapqslilklrpggaqtlqvh.................................


                                                                                                    
                                                                                                    
d1jv2a2               .............................................................................D
ENSNLEP00000015048  ............................................................................g-
ENSNLEP00000000204  ........................gglqcfpqppvnplkvdwglptpspspihrahhkrdrrqiflpepeqpsrlqd-
ENSNLEP00000006814  .............................................................................-
ENSNLEP00000021413  ..................................lncttnhpinpkgleldpegslhhrqkreapsrssassgpqil-
ENSNLEP00000007885  .............................................................................-
ENSNLEP00000015048  .............................................................................-
ENSNLEP00000010846  tvhgngswpcqppgdlinplnltlsdsgdrpsspqrrrrqldpgggqgpppvtlaaakkaksetvltcatgrahcvw-
ENSNLEP00000021413  .............................................................................-
ENSNLEP00000013350  .........................................................dkagdiscnadinplkigqt-
ENSNLEP00000007885  .........................................dtvagqgerdhlitkrdlalsegdihtlgcgvaqcl-
ENSNLEP00000021371  .............................................................................-
ENSNLEP00000015048  .............................................................................D
ENSNLEP00000007885  .............................................................................D
ENSNLEP00000000204  .............................................................................-
ENSNLEP00000007665  .............................................................................-
ENSNLEP00000000204  .............................................................................D
ENSNLEP00000013222  .......................................................................vqrnit-
ENSNLEP00000005694  .............................................................................-
ENSNLEP00000006814  ...........................................................................se-
ENSNLEP00000021413  .............................................................................D
ENSNLEP00000006205  .............................................................................-
ENSNLEP00000000814  .............................................................................-
ENSNLEP00000016139  ...................................................................ftnravllss-
ENSNLEP00000019789  .............................................................................D
ENSNLEP00000019789  .............................................................................-
ENSNLEP00000019802  ...........................................................................np-
ENSNLEP00000019802  .............................................................................D
ENSNLEP00000006205  .............................................................................-
ENSNLEP00000007665  .............................................................................-
ENSNLEP00000006814  .............................................................................D
ENSNLEP00000007665  .............................................................................-
ENSNLEP00000013350  .............................................................................D
ENSNLEP00000021501  .............................................................................-
ENSNLEP00000023995  .............................................................................-
ENSNLEP00000019764  ..........................................................................tkn-
ENSNLEP00000001972  .............................................................................-
ENSNLEP00000013222  .............................................................................-
ENSNLEP00000019229  .............................................................................-
ENSNLEP00000022034  .............................................................................-
ENSNLEP00000010846  .............................................................................D
ENSNLEP00000016139  .............................................................................D
ENSNLEP00000010846  .............................................................................-
ENSNLEP00000020249  .............................................................................-
ENSNLEP00000013222  ...............................sssdnancrphvfedpfsttsgkkmttstdhlrrgtildcntckfa-
ENSNLEP00000020979  .............................................................................-
ENSNLEP00000002952  .............................................................................-
ENSNLEP00000013350  .............................................................................-
ENSNLEP00000021371  .............................................................................-
ENSNLEP00000006205  .............................................................................-
ENSNLEP00000019789  .............................................................................-
ENSNLEP00000016139  .......................................................eyrptpmeedlsrapqlnhsns-
ENSNLEP00000019764  .............................................................................-
ENSNLEP00000019229  .............................................................................-
ENSNLEP00000019802  ................................................................rcdvptfsvqeel-
ENSNLEP00000020979  .............................................................................-
ENSNLEP00000001972  .............................................................................-


                             10                                    20        30                   40
                              |                                     |         |                    |
d1jv2a2               NVCKPKLEVSVDS............................DQKKIYIGDDNPLTLIVKAQN..........QGEG.A
ENSNLEP00000015048  -------------............................---------------------..........----.-
ENSNLEP00000000204  -------------............................---------------------..........----.-
ENSNLEP00000006814  -------------............................---------------------..........----.-
ENSNLEP00000021413  -------------............................---------------------..........----.-
ENSNLEP00000007885  -------------............................---------------------..........----.-
ENSNLEP00000015048  -------------............................---------------------..........----.-
ENSNLEP00000010846  -------------............................---------------------..........----.-
ENSNLEP00000021413  -------------............................------A--------------..........----.-
ENSNLEP00000013350  -------------............................---------------------..........----.-
ENSNLEP00000007885  -------------............................---------------------..........----.-
ENSNLEP00000021371  -------------............................----------------VTVSN..........QG--.-
ENSNLEP00000015048  NLCVPDLKLSARP............................DKHQVIIGDENHLMLIINARN..........EGEG.A
ENSNLEP00000007885  NVCKPKLEVSVDS............................DQKKIYIGDDNPLTLIVKAQN..........QGEG.A
ENSNLEP00000000204  -------------............................----L----------------..........----.-
ENSNLEP00000007665  -------------............................---------------------..........----.-
ENSNLEP00000000204  DVCVPQLQLTASV............................TGSPLLVGADNVLELQMDTAN..........EGEG.A
ENSNLEP00000013222  -------------............................---------------------..........----.-
ENSNLEP00000005694  -------------............................---------------------..........----.-
ENSNLEP00000006814  -------------............................---------------------..........----.-
ENSNLEP00000021413  NICVPDLQLEVFG............................EQNHVYLGDKNALNLTFHAQN..........VGEGgA
ENSNLEP00000006205  -------------............................---------------------..........----.-
ENSNLEP00000000814  -----------Q-............................---------------------..........----.-
ENSNLEP00000016139  -------------............................---------------------..........----.-
ENSNLEP00000019789  HICQDDLGISFSFp...........................GLKTLLVGSNLELNTEVMVWN..........DGED.S
ENSNLEP00000019789  -------------............................---------------------..........----.-
ENSNLEP00000019802  -------------............................---------------------..........----.-
ENSNLEP00000019802  GLCEGDLGVTLSFs...........................GLQTLTVGSSLELNVIVTVWN..........AGED.S
ENSNLEP00000006205  --CAADLQLQGKLllssmdd.....................KTLYLALGAVKNISLNISISN..........LGDD.A
ENSNLEP00000007665  --CSADLQVSAKIgflkphe.....................NKTYLAVGSMKTLMLNVSLFN..........AGDD.A
ENSNLEP00000006814  NVCNSNLKLEYKFctregnqdkfsylpiqk...........GIPELVLKDQKDIALEITVTNspsnprnptkDGDD.A
ENSNLEP00000007665  -------------............................-----------KMNLTFHVIN..........TGNSmA
ENSNLEP00000013350  GLCISDLVLDVRQipaaq.......................EQPFIVSNQNKRLTFSVTLKN..........KRES.A
ENSNLEP00000021501  -------------............................---------------------..........----.-
ENSNLEP00000023995  -------------............................---------------------..........----.-
ENSNLEP00000019764  -------------............................---------------------..........----.-
ENSNLEP00000001972  -----------QK............................KCSHMKVGDTASFNVTVNIPN..........----.-
ENSNLEP00000013222  --CISDLSLHVATte..........................KDLLIVRSQNDKFNVSLTVKN..........TKDS.A
ENSNLEP00000019229  -------------............................---------------------..........----.-
ENSNLEP00000022034  -------------............................--------------------N..........----.-
ENSNLEP00000010846  NKCESNLQMRAAFvseqqqk.....................LSRLQYSRDVRKLLLSINVTNtrtser....SGED.A
ENSNLEP00000016139  EHCVPDLVLDARSdlptameycqrvlrkpaqdcsaytlsfdTTVFIIESTRRRVAVEATLEN..........RGEN.A
ENSNLEP00000010846  -------------............................---------------------..........----.-
ENSNLEP00000020249  -------------............................-------------LFNVTV--..........----.-
ENSNLEP00000013222  -------------............................---------------------..........----.-
ENSNLEP00000020979  -FCVAELQLATTV............................SQ-VXXXXXXXXXXXNISLTN..........SEED.S
ENSNLEP00000002952  -------------............................---------------------..........----.-
ENSNLEP00000013350  -------------............................------------------V--..........----.-
ENSNLEP00000021371  -------------............................---------------------..........----.-
ENSNLEP00000006205  -------------............................-------------NITLQVYN..........TGPS.T
ENSNLEP00000019789  -------------............................---------------------..........----.-
ENSNLEP00000016139  -------------............................---------------------..........----.-
ENSNLEP00000019764  -------------............................-----------------QVSN..........LGQR.S
ENSNLEP00000019229  -------------............................---------------------..........----.-
ENSNLEP00000019802  -----D-------............................---------------------..........----.-
ENSNLEP00000020979  -------------............................---------------------..........----.-
ENSNLEP00000001972  -------------............................---------------------..........----.-


                               50        60             70              80          90       100    
                                |         |              |               |           |         |    
d1jv2a2               Y.EAELIVSIPLQADFIGVVRNNE.....ALARLSCA..FKTEN.Q...TRQVV.CDLGNP.MKAGTQLLAGLRFSVH
ENSNLEP00000015048  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000000204  -.----------------------.....-PVLVSCD..SAPCT.-...--VVQ.CDLQEM.----------------
ENSNLEP00000006814  -.-ATLNIQWPKEISNGKWLLYLVkveskGLEKITCE..-----.-...-----.------.----------------
ENSNLEP00000021413  -.----------------------.....-----KC-..--PEA.E...CFRLR.CELG-P.LHQQESQSLQLHFRVW
ENSNLEP00000007885  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000015048  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000010846  -.----------------------.....--------..-----.-...---L-.------.----------------
ENSNLEP00000021413  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000013350  -.--------S-------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000007885  -.----------------------.....--------..-----.-...--KIV.CQVGR-.----------------
ENSNLEP00000021371  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000015048  Y.EAELFVMIPEEADYVGIERNNK.....GFRPLSCE..YKMEN.V...TRMVV.CDLGNP.MVSGTNYSLGLRFAVP
ENSNLEP00000007885  Y.EAELIVSIPLQADFIGVVRNSE.....ALARLSCA..FKTEN.Q...TRQVV.CDLGNP.MKAGTQLLAGLRFSVH
ENSNLEP00000000204  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000007665  -.----------------------.....--------..-----.-...-----.-N----.----------------
ENSNLEP00000000204  Y.EAELAVHLPQGAHYMWALSNVE.....GFERLICN..QKKENeT...TRVVL.CELGNP.MKKNTQIGITMLVSVG
ENSNLEP00000013222  -.----------------------.....--------..-----.-...-----.----V-.----------------
ENSNLEP00000005694  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000006814  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000021413  Y.EAELRVTAPPEAEYSGLVRHPG.....NFSSLSCD..YFAVN.Q...SRLLV.CDLGNP.MKAGASLWGGLRFTVP
ENSNLEP00000006205  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000000814  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000016139  -.----------------------.....--------..-----.-...-----.------.---GQELCERINFHVL
ENSNLEP00000019789  Y.GTTITFSHPAGLSYRYVAEGQKqrql.RSLRLTCDsaPAGSQ.G...TWSTS.CRINHLvFRGGAQITFVATFDVS
ENSNLEP00000019789  -.----------------------.....--------..-----.-...-----.------.-------------Q--
ENSNLEP00000019802  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000019802  Y.GTVVSLYYPAGLSHRRVSGAQKqphq.CALRLACEtvPTEDE.G...LRSSR.CSVNHPiFHEGSNGTFIVTFDVS
ENSNLEP00000006205  Y.DANVSFNVSRELFFINMWQKEE.....MG--ISCE..LLESD.-...--FLK.CSVGFPfMRSKSKYEFSVIFDTS
ENSNLEP00000007665  Y.ETTLHVKLPMGLYFIKILELEE.....KQ--INCE..VTDNS.G...MVQLD.CSIGYIyVDHLSRIDTSFLLDVS
ENSNLEP00000006814  H.EAKLIATFPDTLTYSAYRELRAf....PEKQLSC-..-VANQ.N...GSQAD.CELGNP.FKRNSSVTFYLVLSTT
ENSNLEP00000007665  P.NVSVEIMVPNSFS---------.....--------..-----.-...-----.------.----------------
ENSNLEP00000013350  Y.NTGIVVDFSENLFFASF-SLPV.....DGTEVTCQ..VAASQ.-...-KSVA.CDVGYPaLKREQQVTFTINFDF-
ENSNLEP00000021501  -.----------------------.....--------..-----.-...-----.------.--INQTVTFWVSLQAT
ENSNLEP00000023995  -.----------------------.....--------..-----.-...-----.------.--INQTVTFWVSLQAT
ENSNLEP00000019764  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000001972  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000013222  Y.NTRTIVHYSPNLVFSGIEAIQK.....DS----CE..SNH--.-...--NIT.CKVGYPfLRRGEMVTFKILFQF-
ENSNLEP00000019229  -.----------------------.....----VECS..FSTSN.-...-----.------.-KMKEGVNITICFQIK
ENSNLEP00000022034  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000010846  H.EALLTLVVPPALLLSSV-----.....-RPPGAC-..-QANE.-...--TIF.CELGNP.FKQNQRMELLIAFEVI
ENSNLEP00000016139  Y.STVLNISQSANLQFASLIQKED.....SDGSIEC-..VNEER.R...LQKKV.CNVSYPfFRAKAKVAFRLDFEFS
ENSNLEP00000010846  -.----------------------.....--------..-----.-...-----.------.-----------E----
ENSNLEP00000020249  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000013222  -.----------------------.....--------..-----.-...--TIT.CNL---.----------------
ENSNLEP00000020979  Y.MTSMALNYPRNLQFKRMQKPPS.....PS--IHCD..DPQPV.A...SVLIMnCRIGHP.VLKRSSAHVSVVWQLE
ENSNLEP00000002952  -.----------------------.....--------..-----.-...-----.------.-----------T----
ENSNLEP00000013350  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000021371  -.----A-----------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000006205  LpGSSVSISFPNRLSSGGAEMFHV.....--------..-----.-...-----.------.----------------
ENSNLEP00000019789  -.----------------------.....------C-..-----.-...-----.------.----------------
ENSNLEP00000016139  -.----------------------.....--------..-----.D...-----.------.----------------
ENSNLEP00000019764  L.PISLVFLVPVRLNQAIIWDRPQvtfp.ENLSSTC-..-----.-...-----.------.----------------
ENSNLEP00000019229  -.---------------------H.....SQIPVSCE..ELPEE.SkllSRALS.CNVSSPiFKAGHSVALQMIFNTV
ENSNLEP00000019802  -.----------------------.....--------..-----.-...-----.------.----------------
ENSNLEP00000020979  -.----------------------.....--------..-----.-...-----.------.----GVVNVSLCFEIS
ENSNLEP00000001972  -.------------------V---.....--------..-----.-...-----.------.----------------


                         110       120       130                                                    
                           |         |         |                                                    
d1jv2a2               QQSEMDTSVKFDLQIQSSNLFDKVSPVVSH-----kvdla......................................
ENSNLEP00000015048  ---P-------------------------------lqcqthpninpqdikpaaspedtpelsaflrnstiphlvrkrd
ENSNLEP00000000204  -----------------------------------argqramvtvlaflwlpslyqrpldqfvlqshawfnvsslpya
ENSNLEP00000006814  -----------------------------------pqneinilnlkeshksrkkreitekqiddnrkfslfaerkyqt
ENSNLEP00000021413  AKTFLQR----------------------------ehqpfslqceavykalkmpyrilprqlpqkerqvatavqwtka
ENSNLEP00000007885  ------------V----------------------ellldklkqkgairralflysrspshsknmtisrgglmqceel
ENSNLEP00000015048  --------V--------------------------lmaevqldslkqkgaikrtlfldnhqahrvfplvikrqkshqc
ENSNLEP00000010846  -----------------------------------ecpipdapivtnvtvkarvwnstfiedygdfdrvrvngwatlf
ENSNLEP00000021413  -----------------------------------srqatltqtlliqngaredcremkiylrnesefrdklspihia
ENSNLEP00000013350  -----------------------------------ssvsfksenfrhtkelncrtascnnvtcwlkdlhmkgeyfvnv
ENSNLEP00000007885  -----------------------------------ldrgksailyvksllwtetfmnkenqnhsyslkssasfnvief
ENSNLEP00000021371  -----------------------------------qslktlgsaflnimwpheiangkwllypmrveleggqgpgqkg
ENSNLEP00000015048  RLEKTNMSINFDLQIRSSNKDNPDSNFVS------lq.........................................
ENSNLEP00000007885  QQSEMDTSVKFDLQIQSSNLFDKVSPV--------vs.........................................
ENSNLEP00000000204  -----------------------------------llgsqqagttlnldlggthspichttmaflrdeadfrdklspi
ENSNLEP00000007665  -----------------------------------msldvnrkaespprfyfssngtsdvitgsiqvssrvancrthq
ENSNLEP00000000204  NLEEAGESVSFQLQIRSKNSQNPNSKIV-------ll.........................................
ENSNLEP00000013222  -----------------------------------rksectkhsfymldkhdfqdsvritldfnltdpengpvldesl
ENSNLEP00000005694  ----------LSFNATCLNNE--------------vipglkscmglkigdtvsfsieakvrgcpqekeksfsikpvgf
ENSNLEP00000006814  ---------------------P-------------kytqeltlkrqkqkvcmeetlwlqdnirdklhpipitasveiq
ENSNLEP00000021413  HLRDTKKTIQFDFRILNKNLNNSQSDVV-------sf.........................................
ENSNLEP00000006205  ---------Y-------------------------fvllgetvgqvteklqltymeetchhyvahvkrrvqdvispiv
ENSNLEP00000000814  -----------------------------------rkceglkigdtasfevsvearscpsrhtehvfalrpvgfrdsl
ENSNLEP00000016139  DTADYVKPVTFSVEYS-------------------ledpdhgpmledgwpttlrvsvpfwngcne.............
ENSNLEP00000019789  PKAVLGDRLLLTANVSSENNTPRTSKTSFQLEL--p..........................................
ENSNLEP00000019789  -----------------------------------etknrslsrvrvlglethcenfnlllptcvedsvtpitlrlnf
ENSNLEP00000019802  ---T-------------------------------ltrrkalglgvhcetlklllpdcvedvvspiilhlkfslvrep
ENSNLEP00000019802  YKATLGDRMLMRASASSKNNKASSSKATFQLE---lp.........................................
ENSNLEP00000006205  HLSGEEEVLSFIVTAQSGNTERSESLHDNTLVL--m..........................................
ENSNLEP00000007665  SLSRAEEDLTITVHATCENEGEMDNL---------khsrv......................................
ENSNLEP00000006814  EVTFDTPDLDINLKLETTSNQDNLAPITAK-----akv........................................
ENSNLEP00000007665  -----------------------------------pktdklfnildvqtttgechfenyqrvcaleqqksametlkgi
ENSNLEP00000013350  NLQNLQNQASLSFQALSESQEENKADNLV------nlk........................................
ENSNLEP00000021501  HC---------------------------------lpephllrlralgfseelivelhtlcdcncsdt..........
ENSNLEP00000023995  HC---------------------------------lpephllrlralgfseelivelhtlcdcncsdt..........
ENSNLEP00000019764  -------------------N---------------trrgtqvlgltqtcetlklqlpncvedpvrpivlhlnfslvgt
ENSNLEP00000001972  -----------------------------------cerrsrhiiikpvglgdalellvspecncdcqk..........
ENSNLEP00000013222  NTSYLMENVTIYLSATSDSEEPPETLSDNV-----vn.........................................
ENSNLEP00000019229  S----------------------------------lipqfqghlvanltytlqldghrtrrrglfpggrhelrrnmav
ENSNLEP00000022034  -----------------------------------gklsegvtisyksyckngvngtgengrkcsnisigdevqfeis
ENSNLEP00000010846  GVTLHTRELQVQLQLSTSSHQDNLWPMTL------tl.........................................
ENSNLEP00000016139  KSIFLH-HLEIELAAGSDSNERDSTREDN------va.........................................
ENSNLEP00000010846  -----------------------------------adrdrrwdplestcsesavfhgffsmpemrcqklelllmdnlr
ENSNLEP00000020249  -----------------------------------tmkkcdvtggknyaiikpigfnetakihihrncscqced....
ENSNLEP00000013222  -----------------------------------tpsdvsqvnvslilwkptfiksyfsslnltirgelqsentslv
ENSNLEP00000020979  ENAFPNRTADITVAVTNSNERRSLANETHT-----lq.........................................
ENSNLEP00000002952  -----------------------------------fqvkvtateciqeqsfviralgftdtvtvrvlpqcecrcrdq.
ENSNLEP00000013350  -----------------------------------vnqaqscpehiiyiqepsdvvnsldlrvdislenpgtspalea
ENSNLEP00000021371  -----------------------------------ldyvldadtdrrlrgqvprvmflsrnpeepkhqasgthdrvcg
ENSNLEP00000006205  -----------------------------------qemvvsqekgncsfqknptpciipqeqenifhtifafftksgr
ENSNLEP00000019789  -----------------------------------ssekiappasdflahiqknpvldcsiagclrfrcdvpsfsvqe
ENSNLEP00000016139  -----------------------------------vvsincnirlapnqeinfhllgnlwlrslkalkyksmkimvna
ENSNLEP00000019764  -----------------------------------htkerlplhsdflaelrkaplvncaiavchriqcdfpffgiqe
ENSNLEP00000019229  VNSSWGDSVELHANVTCNNEDSGLLEDN-------sat........................................
ENSNLEP00000019802  -----------------------------------ftlkgnlsfgwvretsqkkvsvvsvaeitfntsvysqlpgqea
ENSNLEP00000020979  SVTTAS-----------------------------esglrgaslnftldvdvgkqrrrlqcsdvrsclgclrewssgs
ENSNLEP00000001972  -----------------------------------rqtedypvdlyylmdlsasmdddlntikel.............


                                                                                                    
                                                                                                    
d1jv2a2               ..............................................................................
ENSNLEP00000015048  vpvvefhrqspakilnctnieclqiscavgrleggesavlkvrsrlwahtflqrkndpyalaslvsfevkkmpykdqp
ENSNLEP00000000204  vpqlslprgeaqvrtqllraleeraipiwwv...............................................
ENSNLEP00000006814  lncsvnvncvnircplrgldskaslilrsrlwnstfleeysklnyldilmrafidvtaaaeniklpnagtqvrvtvfp
ENSNLEP00000021413  egsygvplwii...................................................................
ENSNLEP00000007885  iaylrdesefrdkltpitifmeyrldyrtaadttglqpilnqftpanisrqahilldcge..................
ENSNLEP00000015048  qdfivylrdetefrdklspinislnysldestfkeglevkpilnyyrenvvseqahilvdcge...............
ENSNLEP00000010846  lrtsiptinmenkttwfsvdidselveelpaeielwlv........................................
ENSNLEP00000021413  lnfsldpqapvdshglrpalhyqsksriedkaqilldcge......................................
ENSNLEP00000013350  ttriwngtfasstfqtvqltaaaeintynpeiyviedntvtiplmimkpdekaevptgvi..................
ENSNLEP00000007885  pyknlpieditnstlvttnvtwgiqpapmpvpvwvi..........................................
ENSNLEP00000021371  lcsprpnilhldvdsrdrrrreleppeqqepgeqqepsmswwpvssaekkknitldcargtancvvfscplysfdraa
ENSNLEP00000015048  ..............................................................................
ENSNLEP00000007885  ..............................................................................
ENSNLEP00000000204  vlslnvslppteagmapavvlhgdthvqeqtrivldcge.......................................
ENSNLEP00000007665  afmrkdvrdiltpiqieaayhlgphviskrsteefpplqpilqqkkekdiikktinfarfc.................
ENSNLEP00000000204  ..............................................................................
ENSNLEP00000013222  pnsvheyipfakdcgn..............................................................
ENSNLEP00000005694  kdslivqvtfdcdcacqaq...........................................................
ENSNLEP00000006814  epssrrrvnslpevlpilnsdepktahidvhflkegcgd.......................................
ENSNLEP00000021413  ..............................................................................
ENSNLEP00000006205  feaayslsehvtgeeerelppltpvlrwkkgqkiaqknqtvfernch...............................
ENSNLEP00000000814  evgvtynctcgcs.................................................................
ENSNLEP00000016139  ..............................................................................
ENSNLEP00000019789  ..............................................................................
ENSNLEP00000019789  tlmgkplpafrnlrpmlaadaqryftaslpfekncg..........................................
ENSNLEP00000019802  ipspqnlrpvlavgsqdlftaslpfekncg................................................
ENSNLEP00000019802  ..............................................................................
ENSNLEP00000006205  ..............................................................................
ENSNLEP00000007665  ..............................................................................
ENSNLEP00000006814  ..............................................................................
ENSNLEP00000007665  vqflsktdkrllycikadphclnflcnfgkmesgkeasvhiqlegrpsilemdetsalkfeiratgfpepnprvieln
ENSNLEP00000013350  ..............................................................................
ENSNLEP00000021501  ..............................................................................
ENSNLEP00000023995  ..............................................................................
ENSNLEP00000019764  plsafgnlrpvlaedaqrlftalvs.....................................................
ENSNLEP00000001972  ..............................................................................
ENSNLEP00000013222  ..............................................................................
ENSNLEP00000019229  ttsmsctdfsfhfpvcvqdlispinvslnfslweeegtprdqreqgkdippilrpslhsetweipfekncge......
ENSNLEP00000022034  itsnkcpkkdsdsfkirplgfteevevilqyicececqs.......................................
ENSNLEP00000010846  ..............................................................................
ENSNLEP00000016139  ..............................................................................
ENSNLEP00000010846  dklrpiiismnyslplrmpdrprlglrsldaypilnqaqalenhtevqfqkecgp.......................
ENSNLEP00000020249  ..............................................................................
ENSNLEP00000013222  lsssnqkrelaiqiskdglpgrvplwvi..................................................
ENSNLEP00000020979  ..............................................................................
ENSNLEP00000002952  ..............................................................................
ENSNLEP00000013350  ysetakvfsipfhkdcge............................................................
ENSNLEP00000021371  damfqlqvdtdpltseaassqans......................................................
ENSNLEP00000006205  kvldcekpgiscltahcnfsalakeesrtidiymllnteilkkdsssviqfmsrakvkvdpalrvveiahgnpeevtv
ENSNLEP00000019789  eldftlkgnlsfgwvrqtsqkkvsvvsvaeitfntsvysqlpgqeafmraqtttv.......................
ENSNLEP00000016139  alqrqfhspfifreedpsrqivfeiskqedwqvpiwii........................................
ENSNLEP00000019764  efnatlkgnlsfdwyiktshnhllvvstaeilfndstftllpgqgafvraqt..........................
ENSNLEP00000019229  ..............................................................................
ENSNLEP00000019802  fmraqm........................................................................
ENSNLEP00000020979  qlcedlllmptegevceedcfsnasvkvsyqlqtpegqtdhpqpildrytepfaifqlpyekack.............
ENSNLEP00000001972  ..............................................................................


                                                    
                                                    
d1jv2a2               ..............................
ENSNLEP00000015048  aklpegsiaiktsviwatpnvsfsiplwvi
ENSNLEP00000000204  ..............................
ENSNLEP00000006814  sktvaqysgvpwwii...............
ENSNLEP00000021413  ..............................
ENSNLEP00000007885  ..............................
ENSNLEP00000015048  ..............................
ENSNLEP00000010846  ..............................
ENSNLEP00000021413  ..............................
ENSNLEP00000013350  ..............................
ENSNLEP00000007885  ..............................
ENSNLEP00000021371  vlhvwgrlwnstflev..............
ENSNLEP00000015048  ..............................
ENSNLEP00000007885  ..............................
ENSNLEP00000000204  ..............................
ENSNLEP00000007665  ..............................
ENSNLEP00000000204  ..............................
ENSNLEP00000013222  ..............................
ENSNLEP00000005694  ..............................
ENSNLEP00000006814  ..............................
ENSNLEP00000021413  ..............................
ENSNLEP00000006205  ..............................
ENSNLEP00000000814  ..............................
ENSNLEP00000016139  ..............................
ENSNLEP00000019789  ..............................
ENSNLEP00000019789  ..............................
ENSNLEP00000019802  ..............................
ENSNLEP00000019802  ..............................
ENSNLEP00000006205  ..............................
ENSNLEP00000007665  ..............................
ENSNLEP00000006814  ..............................
ENSNLEP00000007665  kdenva........................
ENSNLEP00000013350  ..............................
ENSNLEP00000021501  ..............................
ENSNLEP00000023995  ..............................
ENSNLEP00000019764  ..............................
ENSNLEP00000001972  ..............................
ENSNLEP00000013222  ..............................
ENSNLEP00000019229  ..............................
ENSNLEP00000022034  ..............................
ENSNLEP00000010846  ..............................
ENSNLEP00000016139  ..............................
ENSNLEP00000010846  ..............................
ENSNLEP00000020249  ..............................
ENSNLEP00000013222  ..............................
ENSNLEP00000020979  ..............................
ENSNLEP00000002952  ..............................
ENSNLEP00000013350  ..............................
ENSNLEP00000021371  ..............................
ENSNLEP00000006205  vfealhnleprgyvvgwii...........
ENSNLEP00000019789  ..............................
ENSNLEP00000016139  ..............................
ENSNLEP00000019764  ..............................
ENSNLEP00000019229  ..............................
ENSNLEP00000019802  ..............................
ENSNLEP00000020979  ..............................
ENSNLEP00000001972  ..............................


Statistics on alignment.   Save alignment.

Jump to [ Top of page · Alignments · Add alignments from genomes ]

Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

You may enter many sequences at once using
FASTA format:

Upload a multiple sequence FASTA file:




Model: 0047691 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Canis familiaris 58 (pseudogenes) - Dog
NoYes   Danio rerio 58 (pseudogenes) - Zebrafish
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Saccoglossus kowalevskii v3.0
NoYes   Petromyzon marinus 76_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Lepisosteus oculatus 76 - Spotted gar
NoYes   Gadus morhua 76_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 76_4 - Torafugu
NoYes   Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes   Oryzias latipes 76_1 - Japanese medaka
NoYes   Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes   Poecilia formosa 76 - Amazon molly
NoYes   Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes   Astyanax mexicanus 76 - Mexican tetra
NoYes   Danio rerio 76_9 - Zebrafish
NoYes   Oikopleura dioica
NoYes   Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 76 - Vase tunicate
NoYes   Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes   Adineta vaga
NoYes   Octopus bimaculoides 280
NoYes   Crassostrea gigas 22 - Pacific oyster
NoYes   Lottia gigantea - Owl limpet
NoYes   Helobdella robusta
NoYes   Capitella sp. I
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Daphnia pulex - Common water flea
NoYes   Strigamia maritima 22
NoYes   Sarcoptes scabiei
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Pristionchus pacificus
NoYes   Meloidogyne incognita - Southern root-knot nematode
NoYes   Meloidogyne hapla
NoYes   Onchocerca volvulus 22
NoYes   Brugia malayi WS250 - Agent of lymphatic filariasis
NoYes   Caenorhabditis japonica
NoYes   Caenorhabditis brenneri
NoYes   Caenorhabditis remanei
NoYes   Caenorhabditis elegans 76_235 - Roundworm
NoYes   Caenorhabditis briggsae 2
NoYes   Trichinella spiralis 22
NoYes   Hymenolepis microstoma
NoYes   Echinococcus multilocularis
NoYes   Echinococcus granulosus
NoYes   Taenia solium - Pork tapeworm
NoYes   Schistosoma mansoni
NoYes   Mnemiopsis leidyi - Sea walnut
NoYes   Thelohanellus kitauei
NoYes   Acropora digitifera v1.0
NoYes   Nematostella vectensis 1.0 - Starlet sea anemone
NoYes   Hydra vulgaris
NoYes   Amphimedon queenslandica
NoYes   Trichoplax adhaerens
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Ascaris suum Victoria/Ghent - Pig roundworm
NoYes   Caenorhabditis elegans WormBase WS218 - Roundworm
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Petromyzon marinus 69_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Gadus morhua 69_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 69_4 - Torafugu
NoYes   Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes   Oryzias latipes 69_1 - Japanese medaka
NoYes   Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes   Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes   Danio rerio 69_9 - Zebrafish
NoYes   Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 69 - Vase tunicate
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Caenorhabditis elegans 69_215 - Roundworm
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   Heliconius numata
NoYes   Loa loa v3.3 - Eye worm
NoYes   Wuchereria bancrofti v1.0 - Agent of lymphatic filariasis
NoYes   Brugia malayi v1.0 - Agent of lymphatic filariasis
NoYes   Endophytic microbiome from Rice (meta-genome)
NoYes   Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)
NoYes   NCBI 2017_08 genome
NoYes   Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)
NoYes   STRING v9.0.5 (STRING)
NoYes   Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


Jump to [ Top of page · Alignments · Refine alignments · Add alignments from genomes ]