SUPERFAMILY 1.75 HMM library and genome assignments server

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Integrin domains alignments in Cavia porcellus 76_3

These alignments are sequences aligned to the 0047691 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                                                                    
                                                                                                    
d1jv2a2               ..............................................................................
ENSCPOP00000013853  laaveirgvsspdhiflpipnwehkekpeteedvgpvvqhiyelrnngpssfskamlnlqwpyrynnntl........
ENSCPOP00000008755  aqveirgvshpqqvvlpihnwepekephkeeevgplvehiyelhnigpstisdtilevgwpfsardefllyifhiqtl
ENSCPOP00000007567  elllsvsgvakpsqvyfggtvvgeqamksedevgslieyefkvinlgkplknlgs.......................
ENSCPOP00000006369  ielplsvtgvaipqqlffsgvvrgesamrserdvgskvkyevtvsnq...............................
ENSCPOP00000006979  qaevslngvskpeavlfpasdwhppnqpqtegdvgpavhhvyelinhgpstisqgvldiscpqtweghqllyvtrvtg
ENSCPOP00000008755  pvvtvdaqlllnpmiinlenktcqipesvtpvacfslrvcasvtgqsipntialvaelqldslkq.............
ENSCPOP00000013853  pvitvnaglevspsilnqdnktcplpgtglkvscfnvrfclkadgkgvlprklnfqv.....................
ENSCPOP00000006129  earvelrgnsfpaslvvsaegdkeqgildtsgprvehtyelhnrgpgtardlrlgvhlpgqsqasdllyildvqahgg
ENSCPOP00000006979  pivsasasltifpamfnpeerscslegnpvacinlsfclnasgkhvpnsigftvelqldwqkqkggirralfl.....
ENSCPOP00000003234  lqaslsmvnhrlqsffggtvmgesgmktvedvgsplkyefqvspvgeglaalgtlvlglewpyevangkwllypteit
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000008755  ..............................................................................
ENSCPOP00000007567  pviniqktitvtpsridlrqktcaapsgiclkvkacfeytakptgynppitivgtleaekqrrksglssrvqfrnqas
ENSCPOP00000014204  y.............................................................................
ENSCPOP00000008508  pvviveaslsnpesvnrtkfdcvenglpsvcmdltlcfsykgkevpgyivlfynmsldvn..................
ENSCPOP00000006369  pvlhvshevfiaprvidleqpncagghsvcvdlricfsytavpssyspivaldyvldgdtdrrlrgqvprvtflnhgp
ENSCPOP00000010138  kirskvelevrdlpeelslsfnatclnn..................................................
ENSCPOP00000012313  vavvevsmnfepnkvniqkkncrvegketvcinatmcfdvklrskedsiyeadlqyrvtldslrqi............
ENSCPOP00000006129  pvvmatiqllvkdalnpmekrcvlpgtrtlvscfnikmcveatghnipqklrlsaelqldrqkprqgrrtlllesqqa
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000011590  pvvqinaslrfepprinifhkdckrsgrdatclaaflcftpvflapyfqtadvgirynatmderrymprahldegsdq
ENSCPOP00000013200  pvitvdvsiflpssinitapqchdgqqpinclnvtvcfrfhgrhvp................................
ENSCPOP00000008624  sirskvelsvwdqpedlnlfftat......................................................
ENSCPOP00000013994  pvlrvgvtmsftraeiprsmfecqeqaasiqdlgdaivcfdiyestksrggnlqssvtfeltldpgrls.........
ENSCPOP00000013200  d.............................................................................
ENSCPOP00000007567  ..............................................................................
ENSCPOP00000014204  ..............................................................................
ENSCPOP00000008508  n.............................................................................
ENSCPOP00000006456  ..............................................................................
ENSCPOP00000014000  ..............................................................................
ENSCPOP00000018590  lrsevelevlgdteglnlsftavcnngtlfphqkkcl.........................................
ENSCPOP00000011065  lrsevelevlgdteglnlsftavcnngtlfphqkkcl.........................................
ENSCPOP00000002502  pivhvapslditppaisvvqrdcrrrrqeavcltaalcfhvtsrtpghwdrqfnmwvtasldewtagvraafdgsgqr
ENSCPOP00000003234  pvinilhrtlvarpavldptlctatscvqvelcfaynqsagnpnyrrnitlaytleadrdrr................
ENSCPOP00000013352  lsedssnvvqlimdayhslsstvilehsslppgvnisyesycggtetkveagvrgqcnhv..................
ENSCPOP00000006369  ..............................................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000012313  k.............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000006456  pvvdvitrmsffpleipvhevecsysasprkkeg............................................
ENSCPOP00000008508  evmlavhgfvnptsfmygstedselescvsekmnftfhvintgismapnvsveimvpnafvpqtdklfnvldvqtttg
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000008089  ksavgtlsanssnvihliidaynslssev.................................................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000008181  evkvqvenqvqgvyfnvtaicpdgarkpgtdgcgnvtssdevlfn.................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000012313  kyevglqfssyaseyhisvasnetvpeainstedigneinifylikkrghfpmpelklsisfpnltsdgfpvlypngw
ENSCPOP00000014847  kaynklsskvvldhstlpdtlkvtydsfcsngvrlkdqptgvcd..................................
ENSCPOP00000017903  hmkv..........................................................................
ENSCPOP00000014204  iadvsveasfnpekiilfnknaqivlqlcfrakfrptrqnsqvaitynitldadgyssrvtsrglfqennerclqknm
ENSCPOP00000013200  evdtsitgivsptsfvygesvdtsnfiqlddlechf..........................................
ENSCPOP00000013994  lnfsaseeeggsvavhryqvnnlgqrdl..................................................
ENSCPOP00000011590  lshyevkansslesygglgppfhcvfkvqnlgffpihgvtmkitipvatrggnrllvlrdfftdqvntscniwgntte
ENSCPOP00000002502  gpefkttlrvqnlgcyvvhglvvsallpavahggsyflsvsqvitnnasckvqnltvppllpvhpeelqhtdrln...
ENSCPOP00000011658  tmkhqykftnlgkrslp.............................................................
ENSCPOP00000011065  sqveilknkplsigrqknssdivqiapqnlilklrpgseq......................................
ENSCPOP00000014000  pvvhlkvsmtftpsalpigftgsvnghlcfevspttaaaesglrekslnftvdvdvaksrkrlqcvdvgeclnhhqqw


                                                                                                    
                                                                                                    
d1jv2a2               ..............................................................................
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000008755  gplqcqtnpdinpqdikla...........................................................
ENSCPOP00000007567  ..............................................................................
ENSCPOP00000006369  ..............................................................................
ENSCPOP00000006979  lpncttnytpnlqgleldpeeaphhlqrrdapgrspassgpqvlk.................................
ENSCPOP00000008755  ..............................................................................
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000006129  lqcslepspnpseldwrptsasvalhrqrerrqagpaep.......................................
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000003234  ihgngswpcqspgdlvnplnltlsdpknspqrkrreldpggdqgpppitlaaakkaksetvvncangrarcvwlecpl
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000008755  ..............................................................................
ENSCPOP00000007567  eprytqeltl....................................................................
ENSCPOP00000014204  ..............................................................................
ENSCPOP00000008508  ..............................................................................
ENSCPOP00000006369  ddpkhqasgtvwlkhqhdrvc.........................................................
ENSCPOP00000010138  ..............................................................................
ENSCPOP00000012313  ..............................................................................
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000011590  ftnraalls.....................................................................
ENSCPOP00000013200  ..............................................................................
ENSCPOP00000008624  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000013200  ..............................................................................
ENSCPOP00000007567  ..............................................................................
ENSCPOP00000014204  ..............................................................................
ENSCPOP00000008508  ..............................................................................
ENSCPOP00000006456  ..............................................................................
ENSCPOP00000014000  ..............................................................................
ENSCPOP00000018590  ..............................................................................
ENSCPOP00000011065  ..............................................................................
ENSCPOP00000002502  lppmrlq.......................................................................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000013352  ..............................................................................
ENSCPOP00000006369  ..............................................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000012313  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000006456  ..............................................................................
ENSCPOP00000008508  qckfe.........................................................................
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000008089  ..............................................................................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000008181  ..............................................................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000012313  sssdnancrprsledpfginsgtkmsisksellkrgtfpdcktckf................................
ENSCPOP00000014847  ..............................................................................
ENSCPOP00000017903  ..............................................................................
ENSCPOP00000014204  vlnvenrct.....................................................................
ENSCPOP00000013200  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000011590  yratpmdedlsqtlrlnhsnad........................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000011658  ..............................................................................
ENSCPOP00000011065  ..............................................................................
ENSCPOP00000014000  sigprl........................................................................


                                  10                                    20        30                
                                   |                                     |         |                
d1jv2a2               ....DNVCKPKLEVSVDS............................DQKKIYIGDDNPLTLIVKAQN..........Q
ENSCPOP00000013853  ....--------------............................---------------------..........-
ENSCPOP00000008755  ....-----------P--............................---------------------..........-
ENSCPOP00000007567  ....--------------............................---------------------..........-
ENSCPOP00000006369  ....--------------............................---------------------..........-
ENSCPOP00000006979  ....--------------............................---------------------..........-
ENSCPOP00000008755  ....--------------............................---------------------..........-
ENSCPOP00000013853  ....--------------............................---------------------..........-
ENSCPOP00000006129  ....--------------............................---------------------..........-
ENSCPOP00000006979  ....--------------............................------A--------------..........-
ENSCPOP00000003234  pdat--------------............................---------------------..........-
ENSCPOP00000013853  ....DNICKPKLEVSVDS............................DQRKIYIGDDNPLTLIVKAQN..........Q
ENSCPOP00000008755  ....DNLCVPDLKLWARP............................DKNQIIIGDENHLMLTINAKN..........E
ENSCPOP00000007567  ....--------------............................------Q--------------..........-
ENSCPOP00000014204  ....--------------............................---------------------..........-
ENSCPOP00000008508  ....--------------............................---------------------..........-
ENSCPOP00000006369  ....--------------............................---------------------..........-
ENSCPOP00000010138  ....--------------............................---------------------..........-
ENSCPOP00000012313  ....--------------............................---------------------..........-
ENSCPOP00000006129  ....--------------............................-----------D---------..........-
ENSCPOP00000006979  ....DNICVPDLQLEVFG............................DQNRVYLGNKDTLNLTFHAQN..........V
ENSCPOP00000011590  ....--------------............................---------------------..........-
ENSCPOP00000013200  ....--------------............................---------------------..........-
ENSCPOP00000008624  ....---CQDGLSYPNQR............................KCEGLKIGDTASFDV------..........-
ENSCPOP00000013994  ....--------------............................---------------------..........-
ENSCPOP00000013200  ....---CAADLQLQGKLllsside.....................KTPYLALGAVKNISLNISISN..........R
ENSCPOP00000007567  ....DNVCNSNLKLEYKFctregnqdkfsylpiqk...........GVPELVLKDQKDIALEITVTNipsdprnpkkD
ENSCPOP00000014204  ....DGICISDLVLDVQQlpatq.......................KQSYIVSNQNKMLTFSVTLKN..........K
ENSCPOP00000008508  ....---CSADLQVSAKIgffkpye.....................NKTYLAVGSMKTLMLNVSLFN..........A
ENSCPOP00000006456  ....DKKCEADLKLSFSPa...........................RSRELHLIPSSSLAMEWTLSN..........S
ENSCPOP00000014000  ....--FCNAELQLATSM............................SQQELVVGLTKELTMNISLTN..........S
ENSCPOP00000018590  ....--------------............................---HMKVGETASFNVTVSI--..........-
ENSCPOP00000011065  ....--------------............................---HMKVGETASFNVTVSI--..........-
ENSCPOP00000002502  ....--------------............................---------------------..........-
ENSCPOP00000003234  ....--------------............................---------------------..........-
ENSCPOP00000013352  ....--------------............................---------------------..........-
ENSCPOP00000006369  ....DKICQSNLQLVHARfcarvsdtefspmpmdvdg.........MTTLFALSGQPVIGLELTVTNlpsdparpqaD
ENSCPOP00000002502  ....DNECVTDLVLQAKMdirgsr......................KAPFVVQGGRQKVLVSATLEN..........R
ENSCPOP00000012313  ....---CISDLTLDVSTte..........................KGLFIVKSQNDKFNISITVKN..........K
ENSCPOP00000013994  ....DHICQDDLAITFGFl...........................GLKTLVVGSNLELNIEVTVSN..........D
ENSCPOP00000006456  ....--------------............................---------------------..........-
ENSCPOP00000008508  ....--------------............................---------------------..........-
ENSCPOP00000006129  ....DDLCVPQLLLNATV............................VGEKNLIGADSCWSCMWPRPT..........R
ENSCPOP00000008089  ....--------------............................-----------------I---..........-
ENSCPOP00000003234  ....DNRCDSNLQMRAAFvsdqlqp.....................LSRFQYSRDVRKLLLSINVTNapsqer....L
ENSCPOP00000008181  ....--------------............................---------------------..........-
ENSCPOP00000011590  ....DEHCIPDLLLDARSdlptaleycqrvlrkptqhcsaytlsfdTTVFIIESTRRRVAVEATLGN..........R
ENSCPOP00000012313  ....--------------............................---------------------..........-
ENSCPOP00000014847  ....--------------............................---------------------..........-
ENSCPOP00000017903  ....--------------............................-------GETASFNVTVS---..........-
ENSCPOP00000014204  ....--------------............................---------------------..........-
ENSCPOP00000013200  ....--------------............................----------QPLNITIQVYN..........T
ENSCPOP00000013994  ....--------------............................---------------------..........-
ENSCPOP00000011590  ....--------------............................---------------------..........-
ENSCPOP00000002502  ....--------------............................---------------------..........-
ENSCPOP00000011658  ....--------------............................---------------------..........-
ENSCPOP00000011065  ....--------------............................-----------TLQVQ-----..........-
ENSCPOP00000014000  ....--------------............................---------------------..........-


                         40         50        60                       70             80          90
                          |          |         |                        |              |           |
d1jv2a2               GEG.AY.EAELIVSIPLQADFIGVVRNNE...............ALARLSCAFKTEN..Q...TRQVV.CDLGNP.MK
ENSCPOP00000013853  ---.--.----------------------...............-------------..-...LYILH.YDIDGP.MN
ENSCPOP00000008755  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000007567  ---.--.-ATLNIQWPKEISNGKW-----...............-------------..-...-----.------.--
ENSCPOP00000006369  G--.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000006979  ---.--.----------------------...............------C---PEA..E...CFRLH.CDLG-P.VP
ENSCPOP00000008755  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000013853  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000006129  ---.--.----------------------...............--VLVSCDSAPCT..-...--VVQ.CELQEM.--
ENSCPOP00000006979  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000003234  ---.--.----------------------...............-------------..-...-----.------.F-
ENSCPOP00000013853  GEG.AY.EAELIVAIPPQADFIGVVRNSE...............ALARLSCAFKTEN..Q...TRQVV.CDLGNP.MK
ENSCPOP00000008755  GEG.AY.EAELFVMIPEEADYVGIERNNK...............GFRPVSCEYKMEN..V...TRMVV.CDLGNP.MV
ENSCPOP00000007567  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000014204  ---.--.DAEIHLTRSTNINFYEVSSHKN...............-------------..-...-----.------.--
ENSCPOP00000008508  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000006369  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000010138  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000012313  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000006129  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000006979  GEGgAY.EAELRVTAPLEAEYIGFVRNPG...............NFSSLSCDYFTVN..Q...-SLLV.CDLGNP.MK
ENSCPOP00000011590  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000013200  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000008624  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000013994  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000013200  GDD.AY.DANVSFNVSRELFFINMWQKEE...............MG--ISCELLESD..-...--FLK.CSVGFPfMR
ENSCPOP00000007567  GDD.AH.EAKLIATFPDTLTYSAYRELRAf..............PEKQLSC--VANQ..N...GSQAD.CELGNP.FK
ENSCPOP00000014204  GES.AY.NTAIVANFSENLFFASY-SMPV...............DGTEVICQVDSSQ..-...-RSVT.CDVGYPaLK
ENSCPOP00000008508  GDD.AY.ETTLHIRLPTGLYFIKMLDLGE...............KQ--INCEVTDTS..G...TVKLD.CTLGYIyVD
ENSCPOP00000006456  GED.AY.WVQLSLSFPRGLSFRKVEMLRPh..............SQMPVSCEELPEE..PkllTKNLL.CNVSSPiFK
ENSCPOP00000014000  GED.SY.LTSMALNYPRNLHFKMLQKPPS...............PN--VQCTNPKPA..A...SVLVMtCKIGYP.IL
ENSCPOP00000018590  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000011065  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000002502  ---.--.---------------------L...............-------------..-...-----.------.--
ENSCPOP00000003234  ---.--.--------P-------------...............-------------..-...-----.------.--
ENSCPOP00000013352  ---.--.----------------------...............-------------..-...-----.------.-R
ENSCPOP00000006369  GDD.AH.EAQLLVTLPDSLHYSGVRALDS...............GE-KPLC--LSNE..N...ASHVE.CELGNP.MK
ENSCPOP00000002502  KEN.AY.NTSLSLTFSKNLHLASLIPQRD...............SPIKVECAAPIPH..-...--ARL.CSVGHPvFQ
ENSCPOP00000012313  GDS.AY.NTRTIAQYSPNLIFSGIEGIQK...............DS----CESN---..-...-RNIT.CKVGYPfLR
ENSCPOP00000013994  GED.SY.GTTVTLFYPEGLSYLRVARQQItinkkkeakknqqhlRSLRLTCDSAPNGgqA...AWSTY.CSINHLiLP
ENSCPOP00000006456  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000008508  ---.--.----------------------...............----------N--..-...-----.------.--
ENSCPOP00000006129  ARG.PY.EAELGVLLPSGAHYMRALSDVR...............GFERLICNQKKEN..D...SRVVL.CELGNP.MG
ENSCPOP00000008089  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000003234  GED.AH.EALLTLEVPHALLLSSV-----...............-RPPGAC--QANE..-...--TIL.CELGNP.FK
ENSCPOP00000008181  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000011590  GEN.AY.SAVLNISQSPNLQFASLVQRDD...............LDNSIEC-VNEER..G...LHKRV.CNVSYPfFR
ENSCPOP00000012313  ---.--.----------------------...............--A----------..-...-----.------.--
ENSCPOP00000014847  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000017903  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000014204  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000013200  GPS.ALpGSSVSISFPNRLTPGGAEMFQVqemvv..........GQEKGNCSFQK--..-...-----.------.--
ENSCPOP00000013994  ---.--.PVTVNFWVPVGLNGIATWAEME...............-------------..-...-----.------.--
ENSCPOP00000011590  ---.--.----------------------...............-------------..-...V----.------.--
ENSCPOP00000002502  ---.--.----------------------...............-G--------SNT..Q...CQVVR.CHLGT-.LA
ENSCPOP00000011658  ---.--.-ISVVFWVPVRLNNEIVWDRPQ...............-------------..-...-----.------.--
ENSCPOP00000011065  ---.--.----------------------...............-------------..-...-----.------.--
ENSCPOP00000014000  ---.--.----------------------...............------C------..-...-----.------.--


                              100       110       120       130                                     
                                |         |         |         |                                     
d1jv2a2               AGTQ.LLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSH-----kvdla.......................
ENSCPOP00000013853  CTS-.---------------------------------------------dmeinplriqvsssqatekndtgagqgd
ENSCPOP00000008755  ----.---------------------------------------------rtnfkhlhqrtapcsrfnssnspelmnc
ENSCPOP00000007567  ----.---------------------------------------------llylvkveskglekivceppdeinplkl
ENSCPOP00000006369  ----.---------------------------------------------qslntlgsaflnimwpheiangkwllyp
ENSCPOP00000006979  RQQS.LSLQLHFRVWAKTFLQK----------------------------eqlpfslqceaeykalkmpyrilpqqlp
ENSCPOP00000008755  -K--.---------------------------------------------gaikrtlflnnrqshlvfpllvkrqksf
ENSCPOP00000013853  ----.-----------------------E---------------------llldklkhkgairralflhnrspghskn
ENSCPOP00000006129  ----.---------------------------------------------vrgqramvtmlallrlpslrqqgplvqt
ENSCPOP00000006979  ----.---------------------------------------------skqatltetlliqngaqeecremkiylr
ENSCPOP00000003234  ----.---------------------------------------------ttnvtvkarvwnstfiedyrdfdrvrvd
ENSCPOP00000013853  AGTQ.LLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDRVSPVV-------sy..........................
ENSCPOP00000008755  TATN.YSLGLRFAVPRLEKTNTSTNFDLQIRSSNKDNPDSNFVS------lq..........................
ENSCPOP00000007567  ----.---------------------------------------------rqkqrlcmeetlwlqenirdklrpipit
ENSCPOP00000014204  ----.---------------------------------------------vpsvvhyfedigpkfifslkvttglvpv
ENSCPOP00000008508  R---.---------------------------------------------ktespsrfyfssngtsdvitgsiqvwnr
ENSCPOP00000006369  ----.---------------G-----------------------------dsmfqlqenvkdklraivvtlsyslrnp
ENSCPOP00000010138  ----.------------------------------E--------------vipglkscvglkigdtvsfsieakvrgc
ENSCPOP00000012313  ----.-------------------------------S-------------rsffsgtqerkiqrnitvreskcvkhsf
ENSCPOP00000006129  ----.---------------------------------------------ttlsldlgsrhgpvchtataflrdeadf
ENSCPOP00000006979  AGAS.LWGGLRFTVRHLQDTQENIQFDFQILSKNLNNSQSDVVS------y...........................
ENSCPOP00000011590  AGQE.HCQRLSFHVLDTADYVKPVAFSVEYSLEDPEN-------------gpvlddgwpttlrvsvpfwngcne....
ENSCPOP00000013200  ----.---------------G-----------------------------eiglnyiltadvakkemgqlprvyfvll
ENSCPOP00000008624  ----.---------------------------------------------sveawscpgrhtehtftlrpvgfrdslr
ENSCPOP00000013994  ----.-------------P-------------------------------ratfketntrtltrvqvfelsrhcetlq
ENSCPOP00000013200  SKSK.YDFSVIFDTSHLSGEEDVLSFIITAQSGNVERSEALLDNTLI---l...........................
ENSCPOP00000007567  RNSS.VTFYLILSTTELTFDTTDLDINLKLETTSNQDNLASITAK-----akv.........................
ENSCPOP00000014204  SKQQ.VTFTIHFDF-NLQNLQNQASFSFQAFSESEEANKADNSV------nlk.........................
ENSCPOP00000008508  HLSR.MDVSFLLDVSSLRRADEDLNITVLASCENEREMNKLMDNKVT---v...........................
ENSCPOP00000006456  AGTL.VGIQVMFNTLMNSSWGDFVELNTTVRCENENASLLED--------nsa.........................
ENSCPOP00000014000  RRSS.VNMSIVWQLEESPFPNRTAHITVTISNSDERSLAT----------eths........................
ENSCPOP00000018590  ----.---------------------------------------------pncerksrhviikpvglgdtleilvspe
ENSCPOP00000011065  ----.---------------------------------------------pncerksrhviikpvglgdtleilvspe
ENSCPOP00000002502  ----.---------------------------------------------svgnvtceqlyfyvldtsdylrpvvltv
ENSCPOP00000003234  ----.---------------------------------------------prlrfarsqsavfhgffsmpetrcqtle
ENSCPOP00000013352  VNQT.VDFWVTLQAKSC---------------------------------lqephylrlrargfseeltvelhtlcdc
ENSCPOP00000006369  RGAQ.ITFYLILSTSGITIETTELEVELLLTTISEQE-------------lhp.........................
ENSCPOP00000002502  TGAK.VTFLLEFEF-SCTSLLRQVFMRLTASSSSLERNRTLQDNT-----aq..........................
ENSCPOP00000012313  KGEM.VTFKILFQF-NTSYLMENLIIYLSTTSDSEEPSETLFDNA-----vn..........................
ENSCPOP00000013994  GGTQ.VS----LAPAPGPGAPPLLLVTANVSSENNTPRTSKTTFQLEL--p...........................
ENSCPOP00000006456  ----.VNLTVCFQLKSL---------------------------------trqfqgrlvtnltytlqldghrsrsrgl
ENSCPOP00000008508  ----.---------------------------------------------yqrecvsgqkrdametvrsifkflsktd
ENSCPOP00000006129  KDAQ.IGITMWVSVEDLEQASQAVSFRLQVRSKNSQNPNSQAV-------llq.........................
ENSCPOP00000008089  ----.---------------------------------------------lentklpegvtinyksyckngvngtgen
ENSCPOP00000003234  QNQR.MELLIAFEVSGVTLHTRDLRVQLQLFTSSHQDNLQPV--------alt.........................
ENSCPOP00000008181  ----.----------------------V----------------------tvtmkncdvtggknyaiikpigfnettk
ENSCPOP00000011590  AQAQvVAFRLEFEFSKSVF-LNYLEIQLSSGSDSDEQDSTKEDNTA----ll..........................
ENSCPOP00000012313  ----.---------------------------------------------titcnllpsdvsqvnvslilwkptfikt
ENSCPOP00000014847  -G--.---------------------------------------------vqigvpvtfqvkvtatecirgqsfdira
ENSCPOP00000017903  ----.--------IPNCE--------------------------------rksrhviikpvglgdtleilvspecscd
ENSCPOP00000014204  ----.----------------------------Q----------------htiqiqqkpsdvvnsldlrvdislenpg
ENSCPOP00000013200  ----.---------------------------------------------nptpciipqeqenifhtifafftksgrk
ENSCPOP00000013994  ----.---------------------------------------------vshpqnpsiqcsseqlipteadfqtylq
ENSCPOP00000011590  ----.---------------------------------------------vsinchvrlapnqelsfhllgnlwlrsl
ENSCPOP00000002502  KGAE.VSIGLL---------------------------------------rvvhneffrrakfksltvvstfelgtee
ENSCPOP00000011658  ----.---------------------------------------------vtfspnlssacnteerspphsdflaele
ENSCPOP00000011065  ----.---------------------------------------------vrqtedypvdlyylmdlsasmdddlnti
ENSCPOP00000014000  ----.---------------------------------------------kslqlvstegelceedcfsnitvkviyq


                                                                                                    
                                                                                                    
d1jv2a2               ..............................................................................
ENSCPOP00000013853  gnhlivkrdlalsegdvhtlgcgvaqclkiicqvgrldrgksailyvksllwtetfmnkenqnhsyslkssasfsvie
ENSCPOP00000008755  tnieclqiscavgrlerdesavlkvrsrlwahtflqrknnpyalaslvsfkvkkmpyrdqpaklpeggiaiktsviwa
ENSCPOP00000007567  keshksrmkreiaekqiddrrkfslfterkyqtlncsvnvkcvnircplqgldskaalvlrsrlwngtfleeyskmny
ENSCPOP00000006369  mrveleggqgpgqkglcsprpntlqldvdnrdrrrreleqpeqqesyeqqepstswwpvsyaekkrnitldcaqgtak
ENSCPOP00000006979  qkklqvatavqwtkaegsngvplwii....................................................
ENSCPOP00000008755  qcqnfivylrdeiefrdklspinislnysldestfkkglevkpilnhyrnniiteqahilvdcge.............
ENSCPOP00000013853  mtisrggqkqceelvaylrdesefrdkltpitifmeyrldyrtaadatglqpilnqftpanvsrqahilldcge....
ENSCPOP00000006129  vlqsrawfnvsslpyavpalslpsgeavvqtlllraleeravptwwv...............................
ENSCPOP00000006979  nesefrdklspihialnfsldpkaptdshglrpvlhyqsknriedkaqilldcge.......................
ENSCPOP00000003234  gwatlflrtsvpslnmdnkttlfsvdidsdlveelpaeielwlv..................................
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000008755  ..............................................................................
ENSCPOP00000007567  asveiqepssrrrvnslpeilpilnsnepttvqtdvhflkegcgd.................................
ENSCPOP00000014204  smasviihipqytkeknplmyltdihtdqagdiscsrinplklgqtsssvsfkeenfrhvkrivdcrtascsdvicmf
ENSCPOP00000008508  rvncrthqafmrkdvrdiltpiqveaayhlghhviskrsaeefpplqpilqqkkekdlkrkhninfarfc........
ENSCPOP00000006369  rlrrqapgqgvppvapilnahqpstqraeihflkqgcge.......................................
ENSCPOP00000010138  pqekeksftikpvgfkdsltiqvtfdcdctcqa.............................................
ENSCPOP00000012313  ymldkhdfqdsvrvtvdfnltdpengpvlddslpnlvheyipfakdcgn.............................
ENSCPOP00000006129  rdklspivlsldvslppsestsapglvlhgnthiqeqtriildcge................................
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000013200  getagqvleklqlahteelchhyvahvkrrvqdvispivfeaaynlgthvtgeeerelpaltpvlrwkkgqkiaqknq
ENSCPOP00000008624  vvvtynctcgcst.................................................................
ENSCPOP00000013994  lllrtcvedsvtpitlrlnfslegnpipslgglqpvlasdartyftaslpfekncgd.....................
ENSCPOP00000013200  ..............................................................................
ENSCPOP00000007567  ..............................................................................
ENSCPOP00000014204  ..............................................................................
ENSCPOP00000008508  ..............................................................................
ENSCPOP00000006456  ..............................................................................
ENSCPOP00000014000  ..............................................................................
ENSCPOP00000018590  cscdcqk.......................................................................
ENSCPOP00000011065  cscdcqk.......................................................................
ENSCPOP00000002502  aftldnttkpgpvldegsptflqklvpfskdcgp............................................
ENSCPOP00000003234  lllmdnlrdklhpiviamnfslplrlperprlglrsldpypvlnqaqalqnstevqfqkacgp...............
ENSCPOP00000013352  ncsdt.........................................................................
ENSCPOP00000006369  ..............................................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000012313  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000006456  fpggrpeltsttgvsqdesckkfwfhfpvciqdlispinislnfslwekeetmqnkdmenpdmwpvlrpsphsetkei
ENSCPOP00000008508  krvlycmktdsyclnflcnfgkmesgkeasvhiqlegrpsvlemddtsalkfeiratafp..................
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000008089  grkcsnisigdevqfeisitankcpnknsetikikpqgfteevevilqficececqs.....................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000008181  ihiykscscqced.................................................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000012313  hfsslnltirgdlqsensslilsssnqrrelaiqiskdglpgrvplwvi.............................
ENSCPOP00000014847  lgftdtvtvqvlpqckchcrdq........................................................
ENSCPOP00000017903  cqk...........................................................................
ENSCPOP00000014204  sspaleaysdtvkvfsipfykdcg......................................................
ENSCPOP00000013200  vldcenpgmpcltihcnlsalnkeesrtidvymllnteilkkdsssviqfmarakvkve...................
ENSCPOP00000013994  knpeldcsiadclrfrcdvpsfgiqeeldfilkgnlsfgwvsqtlqkkvlvvsvaeitfnrsmysqlpgqeaflraqm
ENSCPOP00000011590  kalkfrslkitmnsalqrqfhspfifreedpsrqvtfdiskqedsqvsiwii..........................
ENSCPOP00000002502  nsvlqlteatrwseslleviqthpipislw................................................
ENSCPOP00000011658  kthvlncsiavcqriacdipyfni......................................................
ENSCPOP00000011065  ke............................................................................
ENSCPOP00000014000  lqdpegwrrdscpilankepfavfqlpyqkack.............................................


                                                                                                    
                                                                                                    
d1jv2a2               ..............................................................................
ENSCPOP00000013853  fpyknlpiedisnstvvttnvtwglqptpmpvpvwvi.........................................
ENSCPOP00000008755  tpnvsfsiplwvi.................................................................
ENSCPOP00000007567  ldilvrayievtaaagniklphagtqvrvtvfpsktvaqysgipwwvi..............................
ENSCPOP00000006369  cvvfscplysfdraavlhvwgrlwnstfleeysavkslevivranitvkssiknlvlrdasmvipvmvyldpmavvak
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000008755  ..............................................................................
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000013853  ..............................................................................
ENSCPOP00000008755  ..............................................................................
ENSCPOP00000007567  ..............................................................................
ENSCPOP00000014204  knldikeeyfinvstriwsrdfrckstfqtvqltaaaeintynpeiyvieentvtiplmimkpnekaevptgvi....
ENSCPOP00000008508  ..............................................................................
ENSCPOP00000006369  ..............................................................................
ENSCPOP00000010138  ..............................................................................
ENSCPOP00000012313  ..............................................................................
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000006979  ..............................................................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000013200  tifernc.......................................................................
ENSCPOP00000008624  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000013200  ..............................................................................
ENSCPOP00000007567  ..............................................................................
ENSCPOP00000014204  ..............................................................................
ENSCPOP00000008508  ..............................................................................
ENSCPOP00000006456  ..............................................................................
ENSCPOP00000014000  ..............................................................................
ENSCPOP00000018590  ..............................................................................
ENSCPOP00000011065  ..............................................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000013352  ..............................................................................
ENSCPOP00000006369  ..............................................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000012313  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000006456  pfekncge......................................................................
ENSCPOP00000008508  ..............................................................................
ENSCPOP00000006129  ..............................................................................
ENSCPOP00000008089  ..............................................................................
ENSCPOP00000003234  ..............................................................................
ENSCPOP00000008181  ..............................................................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000012313  ..............................................................................
ENSCPOP00000014847  ..............................................................................
ENSCPOP00000017903  ..............................................................................
ENSCPOP00000014204  ..............................................................................
ENSCPOP00000013200  ..............................................................................
ENSCPOP00000013994  ..............................................................................
ENSCPOP00000011590  ..............................................................................
ENSCPOP00000002502  ..............................................................................
ENSCPOP00000011658  ..............................................................................
ENSCPOP00000011065  ..............................................................................
ENSCPOP00000014000  ..............................................................................


                             
                             
d1jv2a2               .......
ENSCPOP00000013853  .......
ENSCPOP00000008755  .......
ENSCPOP00000007567  .......
ENSCPOP00000006369  gipwwvi
ENSCPOP00000006979  .......
ENSCPOP00000008755  .......
ENSCPOP00000013853  .......
ENSCPOP00000006129  .......
ENSCPOP00000006979  .......
ENSCPOP00000003234  .......
ENSCPOP00000013853  .......
ENSCPOP00000008755  .......
ENSCPOP00000007567  .......
ENSCPOP00000014204  .......
ENSCPOP00000008508  .......
ENSCPOP00000006369  .......
ENSCPOP00000010138  .......
ENSCPOP00000012313  .......
ENSCPOP00000006129  .......
ENSCPOP00000006979  .......
ENSCPOP00000011590  .......
ENSCPOP00000013200  .......
ENSCPOP00000008624  .......
ENSCPOP00000013994  .......
ENSCPOP00000013200  .......
ENSCPOP00000007567  .......
ENSCPOP00000014204  .......
ENSCPOP00000008508  .......
ENSCPOP00000006456  .......
ENSCPOP00000014000  .......
ENSCPOP00000018590  .......
ENSCPOP00000011065  .......
ENSCPOP00000002502  .......
ENSCPOP00000003234  .......
ENSCPOP00000013352  .......
ENSCPOP00000006369  .......
ENSCPOP00000002502  .......
ENSCPOP00000012313  .......
ENSCPOP00000013994  .......
ENSCPOP00000006456  .......
ENSCPOP00000008508  .......
ENSCPOP00000006129  .......
ENSCPOP00000008089  .......
ENSCPOP00000003234  .......
ENSCPOP00000008181  .......
ENSCPOP00000011590  .......
ENSCPOP00000012313  .......
ENSCPOP00000014847  .......
ENSCPOP00000017903  .......
ENSCPOP00000014204  .......
ENSCPOP00000013200  .......
ENSCPOP00000013994  .......
ENSCPOP00000011590  .......
ENSCPOP00000002502  .......
ENSCPOP00000011658  .......
ENSCPOP00000011065  .......
ENSCPOP00000014000  .......


Statistics on alignment.   Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

You may enter many sequences at once using
FASTA format:

Upload a multiple sequence FASTA file:




Model: 0047691 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
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Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Canis familiaris 58 (pseudogenes) - Dog
NoYes   Danio rerio 58 (pseudogenes) - Zebrafish
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Saccoglossus kowalevskii v3.0
NoYes   Petromyzon marinus 76_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Lepisosteus oculatus 76 - Spotted gar
NoYes   Gadus morhua 76_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 76_4 - Torafugu
NoYes   Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes   Oryzias latipes 76_1 - Japanese medaka
NoYes   Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes   Poecilia formosa 76 - Amazon molly
NoYes   Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes   Astyanax mexicanus 76 - Mexican tetra
NoYes   Danio rerio 76_9 - Zebrafish
NoYes   Oikopleura dioica
NoYes   Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 76 - Vase tunicate
NoYes   Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes   Adineta vaga
NoYes   Octopus bimaculoides 280
NoYes   Crassostrea gigas 22 - Pacific oyster
NoYes   Lottia gigantea - Owl limpet
NoYes   Helobdella robusta
NoYes   Capitella sp. I
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Daphnia pulex - Common water flea
NoYes   Strigamia maritima 22
NoYes   Sarcoptes scabiei
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Pristionchus pacificus
NoYes   Meloidogyne incognita - Southern root-knot nematode
NoYes   Meloidogyne hapla
NoYes   Onchocerca volvulus 22
NoYes   Brugia malayi WS250 - Agent of lymphatic filariasis
NoYes   Caenorhabditis japonica
NoYes   Caenorhabditis brenneri
NoYes   Caenorhabditis remanei
NoYes   Caenorhabditis elegans 76_235 - Roundworm
NoYes   Caenorhabditis briggsae 2
NoYes   Trichinella spiralis 22
NoYes   Hymenolepis microstoma
NoYes   Echinococcus multilocularis
NoYes   Echinococcus granulosus
NoYes   Taenia solium - Pork tapeworm
NoYes   Schistosoma mansoni
NoYes   Mnemiopsis leidyi - Sea walnut
NoYes   Thelohanellus kitauei
NoYes   Acropora digitifera v1.0
NoYes   Nematostella vectensis 1.0 - Starlet sea anemone
NoYes   Hydra vulgaris
NoYes   Amphimedon queenslandica
NoYes   Trichoplax adhaerens
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Ascaris suum Victoria/Ghent - Pig roundworm
NoYes   Caenorhabditis elegans WormBase WS218 - Roundworm
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Petromyzon marinus 69_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Gadus morhua 69_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 69_4 - Torafugu
NoYes   Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes   Oryzias latipes 69_1 - Japanese medaka
NoYes   Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes   Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes   Danio rerio 69_9 - Zebrafish
NoYes   Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 69 - Vase tunicate
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Caenorhabditis elegans 69_215 - Roundworm
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   Heliconius numata
NoYes   Loa loa v3.3 - Eye worm
NoYes   Wuchereria bancrofti v1.0 - Agent of lymphatic filariasis
NoYes   Brugia malayi v1.0 - Agent of lymphatic filariasis
NoYes   Endophytic microbiome from Rice (meta-genome)
NoYes   Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)
NoYes   NCBI 2017_08 genome
NoYes   Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)
NoYes   STRING v9.0.5 (STRING)
NoYes   Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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