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Integrin domains alignments in Pteropus vampyrus 76_1

These alignments are sequences aligned to the 0047692 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                                                                    
                                                                                                    
d1jv2a3               v.............................................................................
ENSPVAP00000004574  t.............................................................................
ENSPVAP00000016296  ..............................................................................
ENSPVAP00000002972  ..............................................................................
ENSPVAP00000010685  x.............................................................................
ENSPVAP00000016296  pvvtvdaqlllnpmiinlenktcqipesttpvacfslrvcasvagqsisdtigltaeveldslkqkgavkrtlfldnr
ENSPVAP00000000304  pivsasasltifpamfnpeerscslegnpvacinlsfclnasgkhvpdsigftvelqldwq.................
ENSPVAP00000006476  a.............................................................................
ENSPVAP00000009592  y.............................................................................
ENSPVAP00000016296  dnmcipdlklsarpdkhqvivgdenhlmliinarnegegayeaelfviipeeadyvgiergnk...............
ENSPVAP00000016742  ..............................................................................
ENSPVAP00000004574  pvitvnaglevypsilnqdsktcplpgtdlkvsxxxxxxxxxxxxxxxxxxxxxfqvellwdklkqkgairralflhn
ENSPVAP00000002972  ddlcvpqlhltasvkgsplligadnvlelqmeaanngegayeaelavylppgahymralsnvegferlicnqkken..
ENSPVAP00000002972  pvvmatvqllvqdslnpavkncimtktpvscfniqmcigvtghnipqklrlnvelqldr...................
ENSPVAP00000006811  pvvvveaslnhpesvnrtnfdcienglpsvcmdltlcfsykgkkvpgyivlfynmsldvnrkaetpsrfy........
ENSPVAP00000010685  pviniqktitvtpnridlrqktacgassgiclkvkacfeytakpadynplisivgtleaekerrksglssrvqfrnqg
ENSPVAP00000009589  vavvkvtmnfepnkvniqkkncrmegketvcinatvcfdvklkskedtfyeadmqyrvtlds................
ENSPVAP00000007405  kirskvelevrdlpeelslsfnatclnn..................................................
ENSPVAP00000016742  pvlhvshevfiaprnidleqpncagghsvcvdlrvcfsyiavpssynpivaldyvldgdtdrrlrgqvprvtflsrgl
ENSPVAP00000004545  pvvqvnaslhfeppkinifhrdckrsgrdatclaaflcftpiflaphfesatvgirynatmdekrytprahlddsgdr
ENSPVAP00000000198  sirskvelsvwdqpedlnlfftatcqdgvsypgqrkceglkigdtasfevsvears......................
ENSPVAP00000012850  pvitvvssiflpasinitapqchdglqpvnclnvtacfsf......................................
ENSPVAP00000000304  ..............................................................................
ENSPVAP00000004574  dnvckpklevsvdrdqkkiyigddn.....................................................
ENSPVAP00000006811  ncsadlqisakfeflrphenktylavgsaktlmlnvslfnagddayettlhiklptglyfikildlee..........
ENSPVAP00000009484  dknceanlglsfssarstilhltpsaslsveltlnnlgedaywvqlslslprglsfrkvetlkphsqi..........
ENSPVAP00000006476  pvinilyktlvarpsvldptlctdsscvqvelcfaynqsagnpnyrqnitlay.........................
ENSPVAP00000000662  lktlvvgsnlelnmevrvwndgedsygt..................................................
ENSPVAP00000009592  dgvcisdlvldvqqlpaaqdqpfivsnqnkrltfsvtlknkkesayntaivvdfsenlffaswsmpsdge........
ENSPVAP00000000304  dnicvpdlqlevfgeqnhvylgdkn.....................................................
ENSPVAP00000009827  lrsevelevsgdteg...............................................................
ENSPVAP00000013645  pivhlapsldvtppaisvvqrdcrrrgqeaaclsaalcfqvtsrtrgrwdrrfhlrftasldewtagaraafdgsgqr
ENSPVAP00000008837  stvtlehsplppgvrisyesqcggpekrdgaagdrgqcnnvrinqmvnflvtlqa.......................
ENSPVAP00000009484  pvvdivtlmsfypaeipvhevecsyptsnkkkkgvnvtvcfqvksltpqfqgllianltytlqldghrtrsrglfpgg
ENSPVAP00000009589  kcisdltldvsttekgllivrshndkfnvsitvknkkdsayntrtivhyspnlifsgieaiqkd..............
ENSPVAP00000012018  fcvaelqlatttsqqelvvgvtkeltmnisltnsgedsymtsmalnypr.............................
ENSPVAP00000013645  dnecvtdlvlradmdvrgsredpflvrggrrkvlvsvilenrmenayntslslsfsrnlhlasftpqrdrp.......
ENSPVAP00000000407  vtydlaldpshqlsraifdetknntyrqtqslglnrk.........................................
ENSPVAP00000016742  dkicqsnlqlvharfcarvsdtefqplpmdvdgttalfalsgqpviglelkvtnlpsdpaqpqadgddaheaq.....
ENSPVAP00000006476  dnkcdsnlemqaafvseqgqpmsrlqysrdfgklllsinvtnirsrqragedaheaqltlavppallpssvrpfgacq
ENSPVAP00000006098  eiipksavgelsedssnvvqliknaynklssrvflehstlpdtlrvty..............................
ENSPVAP00000006811  evm...........................................................................
ENSPVAP00000009589  yevglqfyssasehhisia...........................................................
ENSPVAP00000009592  iadvsvdasftpekitlfnknaeinlklcfsakfrptkqnnqvtitynitidadlyssrvtsrglfkennerclqknm
ENSPVAP00000010199  cgqdllfeedlnvlqslvvrsslenvivtl................................................
ENSPVAP00000004545  dehcvpdllldarsdlptameycqrvlrkpaqdcsaytlsfdttvfiiestrrrvaveamlen...............
ENSPVAP00000013440  vgtlsanssnviqliidaynslssevilensklpegvtinyksyckngvngtgengrkcsni................
ENSPVAP00000010199  vgvairfmpievvkavycrkswfnsreagnvtvclticqkllqlgdvqssvrynmtldagclisraifdkaknwtltq
ENSPVAP00000004545  shye..........................................................................
ENSPVAP00000000662  st............................................................................
ENSPVAP00000013645  p.............................................................................
ENSPVAP00000012850  emgiscellesdflkcsvgfpfmrskskyef...............................................
ENSPVAP00000000662  pvlrvwvsiritpaeitrsvfecqeqmpfvqplvnanvclhvyks.................................
ENSPVAP00000012018  pvirlkvsmtftpkalpigfnssvnaylcfeissettaaqsglretslnftldvdvlkqrkrlrcsdrrt........
ENSPVAP00000000407  nlgqrslp......................................................................
ENSPVAP00000009827  sqveiltnkplsvgrqknssdivqiapqslilklrpgseqtl....................................


                                                                                 10        20       
                                                                                  |         |       
d1jv2a3               ...................................................-LAAVEIRGVSSPDHVFLPI.PNWEHK
ENSPVAP00000004574  ...................................................---AVEIRGVSSPDHIFLPI.PNWEHK
ENSPVAP00000016296  ...................................................--AQVEIRGVSHPLQIVLPI.HNWAPE
ENSPVAP00000002972  ...................................................AEAHVELRGNSFPAFLV--V.A-AEEG
ENSPVAP00000010685  ...................................................--------------------.------
ENSPVAP00000016296  ......................................qsrlvfplatkrq--------------------.------
ENSPVAP00000000304  ...................................................--------------------.------
ENSPVAP00000006476  ...................................................-----SLSMVSHRLQSYFGG.T-VMGE
ENSPVAP00000009592  ...................................................---DAEIHITRSTNIRFYEVsSDGNVP
ENSPVAP00000016296  ...................................................--------------------.------
ENSPVAP00000016742  ...................................................--------------------.------
ENSPVAP00000004574  rspshsknmtisrggqmqceeviaylrdesefrdkltpitifmeyrldyrr--------------------.------
ENSPVAP00000002972  ...................................................--------------------.------
ENSPVAP00000002972  ...................................................--------------------.------
ENSPVAP00000006811  ...................................................--------------------.------
ENSPVAP00000010685  ......................................sepkytreltmnk--------------------.------
ENSPVAP00000009589  ...................................................--------------------.------
ENSPVAP00000007405  ...................................................--------------------.------
ENSPVAP00000016742  ...............................................ddpk--------------------.------
ENSPVAP00000004545  ......................................ytnravllssgqe--------------------.------
ENSPVAP00000000198  ...................................................--------------------.------
ENSPVAP00000012850  ...................................................--------------------.------
ENSPVAP00000000304  ...................................................--------------------.------
ENSPVAP00000004574  ...................................................--------------------.------
ENSPVAP00000006811  ...................................................--------------------.------
ENSPVAP00000009484  ...................................................--------------------.------
ENSPVAP00000006476  ...................................................--------------------.------
ENSPVAP00000000662  ...................................................--------------------.------
ENSPVAP00000009592  ...................................................--------------------.------
ENSPVAP00000000304  ...................................................--------------------.------
ENSPVAP00000009827  ...................................................--------------------.------
ENSPVAP00000013645  .................................................ls--------------------.------
ENSPVAP00000008837  ...................................................--------------------.------
ENSPVAP00000009484  .........................rhelsgntlvtsnesctkfwfhfpvc--------------------.------
ENSPVAP00000009589  ...................................................--------------------.------
ENSPVAP00000012018  ...................................................--------------------.------
ENSPVAP00000013645  ...................................................--------------------.------
ENSPVAP00000000407  ...................................................--------------------.------
ENSPVAP00000016742  ...................................................--------------------.------
ENSPVAP00000006476  ................................................gne--------------------.------
ENSPVAP00000006098  ...................................................--------------------.------
ENSPVAP00000006811  ...................................................----LAVHGFVNPTSFVYGP.EEDSEP
ENSPVAP00000009589  ...................................................--------------------.ANETVP
ENSPVAP00000009592  ............................................ivhqaqs--------------------.------
ENSPVAP00000010199  ...................................................--------------------.------
ENSPVAP00000004545  ...................................................--------------------.------
ENSPVAP00000013440  ...................................................--------------------.------
ENSPVAP00000010199  .................................rktlglrnhceimklllp--------------------.------
ENSPVAP00000004545  ...................................................--------------------.--IKPN
ENSPVAP00000000662  ...................................................--------------------.------
ENSPVAP00000013645  ...................................................--------------------.------
ENSPVAP00000012850  ...................................................--------------S-----.------
ENSPVAP00000000662  ...................................................--------------------.------
ENSPVAP00000012018  ...................................................--------------------.------
ENSPVAP00000000407  ...................................................--------------------.------
ENSPVAP00000009827  ...................................................--------------------.------


                        30        40        50          60          70        80             90     
                         |         |         |           |           |         |              |     
d1jv2a3               ENPETEEDVGPVVQHIYELRNNGPSS..FSKAMLHLQWPYKY..NNNTLLYILHYDIDGP....MNCTSDM.EINPLR
ENSPVAP00000004574  ENPETEEDVGPVIQHIYELRNNGPSS..FSKAMLNLQWPYKY..NNNTLLYILQYDIDGP....MNCTSDM.EINPLR
ENSPVAP00000016296  EEPRKEEGVGPLVEHIYELHNIGPSA..ISDTLLEVGWPFFA..RDEFLLYIFHIQTLGP....LQCQTNP.DINPQD
ENSPVAP00000002972  DRENNLDDWGPKMEHTYELHNNGPGT..VSGLRLSLHLPGQS..QSSDLLYILDIQTQGG....LQCSPQP.SPNPHK
ENSPVAP00000010685  QAMKHEDEVGSLIEYEFRVINLGKPLknLGTATLNIQWPKEIn.NGKWLLYLVKVESKGLek..IACEPQN.EINLLD
ENSPVAP00000016296  --------------------------..--------------..--------------G-....-------.------
ENSPVAP00000000304  --------------------------..-----------K--..----------------....-------.------
ENSPVAP00000006476  SGMKTVEDVGSPLKYEFQVSPMGEGLaaLGTLVLGLEWPYEVi.NGKWLLYPTEITIRGNgs..WPCQPPGdLVNPLN
ENSPVAP00000009592  SIVHNYEDIGPKFIFSIKVT-TGSVP..VSMASVIIRIPQYT..KKNPLMYLTGVHTDQA....GDISCNA.EINPLK
ENSPVAP00000016296  --------------------------..--------------..----------------....-------.------
ENSPVAP00000016742  ------------------VSNQGQSLntLGSAFLNIMWPHEVa.NGKWLLYPMRVELEGGqgpgPKGLCSP.RPNILR
ENSPVAP00000004574  --------------------------..--------------..----------------....-------.------
ENSPVAP00000002972  --------------------------..--------------..----------------....-------.------
ENSPVAP00000002972  Q-------------------------..--------------..----------------....-------.------
ENSPVAP00000006811  --------------------------..--------------..----------------....-------.------
ENSPVAP00000010685  --------------------------..--------------..----------------....-------.------
ENSPVAP00000009589  --------------------------..--------------..----------------....-------.------
ENSPVAP00000007405  -E------------------------..--------------..----------------....-------.------
ENSPVAP00000016742  --------------------------..--------------..----------------....-------.------
ENSPVAP00000004545  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000198  -------CPGKHMEHVFTLRPVG---..--------------..----------------....-------.------
ENSPVAP00000012850  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000304  -------------------INLGPAS..ISRGALELSCPKTL..KGQQLLYMTKF--TGL....SNCTARH.LPNSEH
ENSPVAP00000004574  --------------------------..--------------..----------------....-------.---PLT
ENSPVAP00000006811  --------------------------..--------------..----------------....-------.------
ENSPVAP00000009484  --------------------------..--------------..----------------....-------.------
ENSPVAP00000006476  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000662  --------------------------..--------------..----------------....-------.------
ENSPVAP00000009592  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000304  -----------SLNLTFHAQNVGEGG..AYEAELRVTAPPEA..EYS-------------....-------.------
ENSPVAP00000009827  --------------------------..--------------..----------------....-------.------
ENSPVAP00000013645  --------------------------..--------------..----------------....-------.---P--
ENSPVAP00000008837  --------------------------..--------------..----------------....-------.------
ENSPVAP00000009484  --------------------------..--------------..----------------....----V--.------
ENSPVAP00000009589  --------------------------..--------------..----------------....-------.------
ENSPVAP00000012018  --------------------------..--------------..----------------....-------.-----N
ENSPVAP00000013645  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000407  --------------------------..--------------..----------------....-------.------
ENSPVAP00000016742  --------------------------..--------------..----------------....-------.------
ENSPVAP00000006476  --------------------------..--------------..----------------....-------.------
ENSPVAP00000006098  --------------------------..--------------..----------------....-------.------
ENSPVAP00000006811  ETCMAE-----KMNFTFHVINTGHSV..APNVSVEIMVPNSFipQTDKLFNILDVQTT-T....GECHFKN.Y-----
ENSPVAP00000009589  EVINSTEDIGNEINIFYLIRKSGHFP..MPELKLSISFPNLTs.DGYPVLYPSGWSSSDN....ANCRPSS.LQDPLG
ENSPVAP00000009592  --------------------------..C-------------..----------------....-------.------
ENSPVAP00000010199  --------------------------..--------------..----------------....-------.------
ENSPVAP00000004545  ---------------------R----..--------------..----------------....-------.------
ENSPVAP00000013440  -------S------------------..--------------..----------------....-------.------
ENSPVAP00000010199  --------------------------..--------------..----------------....---D---.------
ENSPVAP00000004545  SSLERYDGIGPPFNCIFKIQNLGLFP..VHGVMMKITVPIATr.GGNRLLMLRDFLTDQVn...TSCNVWG.--N---
ENSPVAP00000000662  ----SEEEESSMVQHRYQVNNLGQRG..LS-ISVNFLVPVEL..NQVTVWKEIEVFSPQNps..IQCSSER.I-----
ENSPVAP00000013645  ---------GPEFKTTLKVQNLGCYV..VSGLIISAFLPAVAh.GGNYFLSLSQV-ITNN....ASCTVQN.LTEPPG
ENSPVAP00000012850  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000662  --------------------------..--------------..----------------....-------.------
ENSPVAP00000012018  --------------------------..--------------..----------------....-------.------
ENSPVAP00000000407  --------------------------..---ISVVFWIPIQL..NKVAVWEQPQVTFS--....-------.------
ENSPVAP00000009827  --------------------------..--------------..----------------....-------.------


                            100       110            120           130                   140        
                              |         |              |             |                     |        
d1jv2a3               IKI....SSLQTTEKNDTVAGQGERD.....HLITKRDLA....LSEGDIHTLG......C......GVAQ.....CL
ENSPVAP00000004574  IKV....SNSQATEKNDTGFGQGDRN.....HLITKRDLT....QSEGDIHTLG......C......GIAE.....CL
ENSPVAP00000016296  IKPa...APPVDTPELSAFLRNSTIP.....HLIRKRDVPvlepHRQSPMKILN......C......TNIE.....CL
ENSPVAP00000002972  LDWgl..PTPTPSPIYPAHHKRERRQ.....AFLPGPKES....SRLQNPVLVS......C......DSAP.....CT
ENSPVAP00000010685  LKE....SHNSRKKREIAEKQIDDNR.....KFS-----L....FAERKYQTLN......Cs.....VNVK.....CV
ENSPVAP00000016296  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000000304  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000006476  LTLsvpgDRLPSSQRRRQLDPGGGQG.....PPPATLAAA....KKAKSETLLS......Cgs....DHTR.....CV
ENSPVAP00000009592  IGQ....TSSSVSFKSEXXXHVKD--.....---------....--------LN......C......RTAS.....CS
ENSPVAP00000016296  ---....-------------------.....---------....----G-----......-......----.....--
ENSPVAP00000016742  LDV....DNRDRRRRELEQPEQQEPHeqlepSTSWWPVSS....AEKKKNITLD......Car....NTAN.....CI
ENSPVAP00000004574  ---....----------A--------.....---------....----------......-......----.....--
ENSPVAP00000002972  ---....-------------------.....---------....----------......-......---E.....TK
ENSPVAP00000002972  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000006811  ---....-----------F-------.....---------....----------......-......----.....--
ENSPVAP00000010685  ---....-------------------.....---------....-Q--------......-......----.....--
ENSPVAP00000009589  ---....--L----------------.....---------....----------......-......----.....--
ENSPVAP00000007405  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000016742  ---....-------------------.....H--------....----------......-......----.....--
ENSPVAP00000004545  ---....-------------------.....H--------....----------......-......----.....--
ENSPVAP00000000198  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000012850  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000000304  LEL....DPEGSQNHRLQRREAPGQS.....---------....PASSWPQILK......C......PEVE.....CF
ENSPVAP00000004574  LIV....KAQNQGEGAYEAELIVSIP.....PQADFIGVV....RNSEALARLS......C......AFTE.....NI
ENSPVAP00000006811  ---....-------------------.....---------....------KQIN......Cevt...DSSG.....IV
ENSPVAP00000009484  ---....-------------------.....---------....-------PVS......CeelpeeATLP.....TR
ENSPVAP00000006476  ---....------------T------.....---------....----------......-......----.....--
ENSPVAP00000000662  ---....--------TVTFFYPPGLS.....YRRVAGSQS....QLQSQSLRLT......C......DSAPaesqgIQ
ENSPVAP00000009592  ---....-------------------.....---------....---------T......C......QVTS.....QK
ENSPVAP00000000304  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000009827  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000013645  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000008837  ---....-------------------.....--------T....----------......-......----.....--
ENSPVAP00000009484  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000009589  ---....-------------------.....---------....---------S......C......ES--.....NH
ENSPVAP00000012018  LQF....K------------------.....---------....----------......-......----.....--
ENSPVAP00000013645  ---....-------------------.....---------....------VKVE......C......----.....--
ENSPVAP00000000407  ---....-------------------.....---------....----------......C......ET--.....--
ENSPVAP00000016742  ---....-------------------.....-LLVSLPAS....LHYSGVRALDpaekplCl.....SNEN.....AS
ENSPVAP00000006476  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000006098  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000006811  ---....------ERKCSSEQXXXXX.....XXXXXXXXX....XXXXXXXXXY......Cmk....ADPH.....CL
ENSPVAP00000009589  INS....KKKTIIFKSEDL-------.....---------....---KRGTILD......C......SSCK.....FA
ENSPVAP00000009592  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000010199  --W....NEGEDSYRTVINFYDPAGL.....SYRVLGIQK....QPHQCPLHLA......CeavpteNEEG.....LR
ENSPVAP00000004545  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000013440  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000010199  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000004545  ---....--STEYRHA------PMEE.....DLSRAPQLN....HSNSDVVSIN......C......----.....--
ENSPVAP00000000662  ---....-------------------.....-VPTESSFM....THIQKNPVLD......C......SIAD.....CL
ENSPVAP00000013645  HPV....HP-----------------.....---------....EDLQHTSRLN......G......SNTR.....CQ
ENSPVAP00000012850  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000000662  ---....-------------------.....---------....----------......-......----.....--
ENSPVAP00000012018  ---....-------------------.....---------....----------......-......----.....C-
ENSPVAP00000000407  ---....--------QNLSSTCHTEE.....RVPPHSDFL....AMLKMTSVLN......C......SIAV.....CQ
ENSPVAP00000009827  ---....--------Q----------.....---------....----------......-......----.....--


                          150           160       170       180       190                       200 
                            |             |         |         |         |                         | 
d1jv2a3               KIVCQVG..R..LDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNV.I.........EFPYKNL......PI
ENSPVAP00000004574  KIVCQVG..R..LDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNV.I.........EFPYKNL......PI
ENSPVAP00000016296  RISCVVG..R..LEGGESAVLKVRSRLWAKTFLQR--KNDPYSLASLVSFEV.K.........KMPYKDQ......PE
ENSPVAP00000002972  VVQCELQ..E..MVRGQRAMVTMLAFLQLPSLRQR--PLDQFVLQSQAWFNV.S.........SLPYAVP......AL
ENSPVAP00000010685  NIRCPLR..G..LDS--KASVVLRSRLWNSTFLEEYSKMNYLDILVRASIDV.TaatenikvpNAGTQVR......VT
ENSPVAP00000016296  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000000304  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000006476  WLECPIP..D..APV--ITNVTVQARVWNSTFIEDYRDFDRVRVTSWATLFLrT.........SIPTIN-......--
ENSPVAP00000009592  NVTCWLK..D..PQVKGEYFLNVSTRIWNGTFAAS--TFQTVQLTASAEIDT.Y.........NPQIYAIeentv.TI
ENSPVAP00000016296  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000016742  IFSCPLY..S..FDR--AAVLHVWGRLWNSTFLEEYSAVKSLEVIVRANITV.KssiknlvlrDASTVIP......VM
ENSPVAP00000004574  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000002972  VVLCELG..Np.MKR--NVRIGITMLVSVESLEEA-----------------.-.........-------......--
ENSPVAP00000002972  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000006811  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000010685  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000009589  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000007405  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000016742  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000004545  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000000198  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000012850  --H----..-..----------------------------------------.-.........-------......--
ENSPVAP00000000304  RLRCELG..P..LHRQESRSLQLHFRVGAKTFLQR--EHQPFSLQCEAVYEA.L.........KMPYRIL......PR
ENSPVAP00000004574  RVLC-LG..N..MKAGTKLL--------------------------------.-.........-------......--
ENSPVAP00000006811  KLDCSVG..Y..IYVDHLSRIDVSFLLDASSLSRAEE---DLN---------.-.........-------......--
ENSPVAP00000009484  SLSCNVS..SpiFKAGSSIVIQV-----------------------------.-.........-------......--
ENSPVAP00000006476  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000000662  STHCSIK..H..LIFREGAQITFTATF-------------------------.-.........-------......--
ENSPVAP00000009592  SVTCDVGypA..LKRKQQVTFTINFDFNLQNLQNQ-----------------.-.........-------......--
ENSPVAP00000000304  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000009827  -------..-..------LNLSFTAICKNGTFFPHQKKCSHMKVGDTASFNV.Tv........SIP----......--
ENSPVAP00000013645  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000008837  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000009484  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000009589  NITCKVGypF..LKRGEMVTFKILFQFNTSYLMEN-----------------.-.........-------......--
ENSPVAP00000012018  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000013645  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000000407  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000016742  HVECELG..Np.MKR--DAQITFYLILS------------------------.-.........-------......--
ENSPVAP00000006476  TILCHLG..Np.FKRNQRMELLIVFEVIGVTLHTR-------ELQVQLQL--.-.........-------......--
ENSPVAP00000006098  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000006811  NFLCNFG..K..MESGKEVSVHIQLEGRPSVLEMDETSALKFEIRATAF---.-.........-------......--
ENSPVAP00000009589  TITCNLI..P..---SDMSQVNVSLILWKPTFIKA--HFSSFNLTVKAELQS.E.........NASLVLStgnqkrQL
ENSPVAP00000009592  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000010199  SISCSIN..H..FEGTKGTFIV------------------------------.-.........-------......--
ENSPVAP00000004545  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000013440  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000010199  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000004545  ----NV-..R..LAPNQEINFHLLGNLWLRSLKAL--KYKLMKITVNAALQR.Qf........HSPFIFReedps.RQ
ENSPVAP00000000662  RFRCDIP..S..FGIQEELDFILKGNLSFGWISQT--LQKNVFIVSVAEITF.N.........RSVYSQL......PG
ENSPVAP00000013645  VVRCHLG..W..LAKGTEVSVGLLRLVHNEFFRKA--KFKSVTVVSTF----.-.........-------......--
ENSPVAP00000012850  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000000662  -------..-..-------------------------SKDRLDLQSSVTFDL.T.........-------......--
ENSPVAP00000012018  -------..-..----------------------------------------.-.........-------......--
ENSPVAP00000000407  RVQCDIL..S..FGSQEEFNVTLKGNLSFDWYIKT--SHNYLQVLSTAEILF.D.........DLMFALL......P-
ENSPVAP00000009827  -------..-..----------------------------------------.-.........-------......--


                                       210                                                          
                                         |                                                          
d1jv2a3               EDI...........TNSTLV...........TTNVTWGI-q.....................................
ENSPVAP00000004574  EDI...........FNSTLVttnvtwgiqpaPMPVPVWVI......................................
ENSPVAP00000016296  KLPegsiaiktsviWATPNV...........SFSIPLWVI......................................
ENSPVAP00000002972  SLP...........TGEALVqtqllrale..ERDIPIWWV......................................
ENSPVAP00000010685  VFP...........SKTVAQ...........HSGVPWWII......................................
ENSPVAP00000016296  ---...........------...........---------srqcrdftvylrdetefrdklspinislnysldestlk
ENSPVAP00000000304  ---...........------...........---------qkggirralflasrqatltqtlliqngaredcremkiy
ENSPVAP00000006476  ---...........------...........---------men...................................
ENSPVAP00000009592  PIT...........IMKPHE...........KAEVPTGVI......................................
ENSPVAP00000016296  ---...........------...........---------frslsceykmenvtrtvvcdlgnpmvagtnyslglrft
ENSPVAP00000016742  VYL...........DPVAVV...........AEGVPWWVI......................................
ENSPVAP00000004574  ---...........------...........---------adatglqpilnqftpanvsrqahilldcgd........
ENSPVAP00000002972  ---...........------...........---------genvsfwlqirsknsqnpnsetvll.............
ENSPVAP00000002972  ---...........------...........---------kprqgrrvlllssqqasatlnldlggrhspichnttaf
ENSPVAP00000006811  ---...........------...........---------ssngtsdvitgsmkvssavancrthqafmrkdvrdilt
ENSPVAP00000010685  ---...........------...........---------kqkvcmeetlwlqenirdklrpipitasveiqepnsrr
ENSPVAP00000009589  ---...........------...........---------rqisrsffsgtqerkiqrnitvresectkhffymldkh
ENSPVAP00000007405  ---...........------...........---------vipglkscvglkigdtvsfsieakvrgcpqekeksfai
ENSPVAP00000016742  ---...........------...........---------qasgtvwlkhqhdrvcgdtmfqlqenvkdklraivvtl
ENSPVAP00000004545  ---...........------...........---------cerinfhvldtadyvkpvtfsveysledpnygpmlddg
ENSPVAP00000000198  ---...........------...........---------frdslevgvtyncqcgcs....................
ENSPVAP00000012850  ---...........------...........---------grhvpgeiglnyiltadvakkeksqlprvyfvlhgesv
ENSPVAP00000000304  QLP...........RKELQVatavqwtkaegSHGVPLWII......................................
ENSPVAP00000004574  ---...........------...........---------aglrfsvhqqsemdtsvkfdlqiqssnlfdkvspvvsy
ENSPVAP00000006811  ---...........------...........---------itvhaacenegvtdnlkrnkvtvv..............
ENSPVAP00000009484  ---...........------...........---------mfhtllnsswgdfvklhanvscdnedtglledns....
ENSPVAP00000006476  ---...........------...........---------leadrdrrpprlrfaqsqsavfhgffsmpemrcqtlel
ENSPVAP00000000662  ---...........------...........---------dvspkamlgdrlllmgnvssenntprtskttfqlelp.
ENSPVAP00000009592  ---...........------...........---------asvsfqalsesyeenkadnsvnlk..............
ENSPVAP00000000304  ---...........------...........---------glvrhpgnfsslscdyfavnqsrllvcdlgnpmkagas
ENSPVAP00000009827  ---...........------...........---------ncerrsrriiikpvglgdtleilvtpecncdcqk....
ENSPVAP00000013645  ---...........------...........---------rrlrlsvgnvtceqlhfhvldtsdylrpvvltvtfald
ENSPVAP00000008837  ---...........------...........---------hclqephllrlralgfseeltvelhtlcdcncsdt...
ENSPVAP00000009484  ---...........------...........---------qdlispinvslnfslweeegtprnqreqgkdiqpilrp
ENSPVAP00000009589  ---...........------...........---------vtihlsatsdsdepletlsdnev...............
ENSPVAP00000012018  ---...........------...........---------kiqkppspsiqcdnpettasvlvmnckighpilrrss.
ENSPVAP00000013645  ---...........------...........---------aapapharlcsvghpvfptgakvtfllefefscsslls
ENSPVAP00000000407  ---...........------...........---------lklqlpdcvknsvtpivlrlnfslvgqplssfgnlrpv
ENSPVAP00000016742  ---...........------...........---------tsgitietelevelllatisee................
ENSPVAP00000006476  ---...........------...........---------stssqknnlkpitltl......................
ENSPVAP00000006098  -D-...........------...........---------sfcsngvsqvnqprgdcdgvqindpvtfqvkvtaaeci
ENSPVAP00000006811  ---...........------...........---------pe....................................
ENSPVAP00000009589  AIQ...........ISKDGL...........PGRVPLWVI......................................
ENSPVAP00000009592  ---...........------...........---------sefiiliqepsdvvnsldlcvnislenpgtspaleays
ENSPVAP00000010199  ---...........------...........---------tfdasykailgdklllrvnassennkpttskttlqlef
ENSPVAP00000004545  ---...........------...........---------genaystvlnisqsanlqfasliqkddsdgsiecvnee
ENSPVAP00000013440  ---...........------...........---------igdevqfeisitsnkcpnknsgtikirplgfteveiil
ENSPVAP00000010199  ---...........------...........---------ctedvvnpiilhlnfpssqnfcpvlamgsqdlftaslp
ENSPVAP00000004545  ITF...........EISKQE...........DWQIPIWII......................................
ENSPVAP00000000662  QEV...........FLR---...........---------aqi...................................
ENSPVAP00000013645  ---...........------...........---------elg...................................
ENSPVAP00000012850  ---...........------...........---------vifdtshlsgeeevlsfivtaqsgnverseslhdntlt
ENSPVAP00000000662  ---...........------...........---------ldpgrlspraifeetktwnltrvrvlglrqhcedvrfl
ENSPVAP00000012018  ---...........------...........---------qsylwewsnlckpflliptegelceedcfsnisvkvsy
ENSPVAP00000000407  ---...........------...........---------gqgafvraqt............................
ENSPVAP00000009827  ---...........------...........---------vqvrqtedypvdlyylmdlsasmdddlntike......


                                                                                                    
                                                                                                    
d1jv2a3               ..............................................................................
ENSPVAP00000004574  ..............................................................................
ENSPVAP00000016296  ..............................................................................
ENSPVAP00000002972  ..............................................................................
ENSPVAP00000010685  ..............................................................................
ENSPVAP00000016296  eglevkpilnhyrenvvteqahilvecge.................................................
ENSPVAP00000000304  lrnesefrdklspihialnfsldpqapvdshglqpvlhyqsksriedkaqilldcge.....................
ENSPVAP00000006476  ..............................................................................
ENSPVAP00000009592  ..............................................................................
ENSPVAP00000016296  vprlektnmsinfdlqirssnkdnpdsnlvsl..............................................
ENSPVAP00000016742  ..............................................................................
ENSPVAP00000004574  ..............................................................................
ENSPVAP00000002972  ..............................................................................
ENSPVAP00000002972  lrdeadfrdklspivlsvnvslqpedglapalvlhgdthvqeqtriildcge..........................
ENSPVAP00000006811  piqieaayhlghhviskrsteefpplqpilqqknkkdiiqktinfarfc.............................
ENSPVAP00000010685  rvnslpevfpilnsnepttvhtdvhflkegcgd.............................................
ENSPVAP00000009589  dfrdsvritldfnltdpengpilddslpnsvhehipfakdcgn...................................
ENSPVAP00000007405  kpvgfkdsltvqvtfdcdcacqa.......................................................
ENSPVAP00000016742  syslqtprlrrqapgqglplvapilnahqpstqraeihflkqgcge................................
ENSPVAP00000004545  wpttlrvsvpfwngcne.............................................................
ENSPVAP00000000198  ..............................................................................
ENSPVAP00000012850  gqvseklhlvhmeetchhyvahvkrrvqdvispivfeaayslgehvtgeedrelpaltpvlrwkkgqkiaqknqtvfe
ENSPVAP00000000304  ..............................................................................
ENSPVAP00000004574  ..............................................................................
ENSPVAP00000006811  ..............................................................................
ENSPVAP00000009484  ..............................................................................
ENSPVAP00000006476  llmdnvrdklrpiiismnyslslrmperprlalqsldaypvlnqaqalenhtevqfqkecgp................
ENSPVAP00000000662  ..............................................................................
ENSPVAP00000009592  ..............................................................................
ENSPVAP00000000304  x.............................................................................
ENSPVAP00000009827  ..............................................................................
ENSPVAP00000013645  nttkrgpvldegsptsirklvpfskdcgp.................................................
ENSPVAP00000008837  ..............................................................................
ENSPVAP00000009484  lphsetkeipfekncge.............................................................
ENSPVAP00000009589  ..............................................................................
ENSPVAP00000012018  ..............................................................................
ENSPVAP00000013645  rvlvrltatsnslessetlrdnta......................................................
ENSPVAP00000000407  lavdaqrlftalfpfekncgn.........................................................
ENSPVAP00000016742  ..............................................................................
ENSPVAP00000006476  ..............................................................................
ENSPVAP00000006098  qeksfviralgfsdtvtvqvlpqctcqcrd................................................
ENSPVAP00000006811  ..............................................................................
ENSPVAP00000009589  ..............................................................................
ENSPVAP00000009592  esakvfsipfykdcgd..............................................................
ENSPVAP00000010199  ..............................................................................
ENSPVAP00000004545  krlhkkvcnvsypffrakakvairl.....................................................
ENSPVAP00000013440  qficec........................................................................
ENSPVAP00000010199  fkncg.........................................................................
ENSPVAP00000004545  ..............................................................................
ENSPVAP00000000662  ..............................................................................
ENSPVAP00000013645  ..............................................................................
ENSPVAP00000012850  lt............................................................................
ENSPVAP00000000662  ll............................................................................
ENSPVAP00000012018  qlqtpkgqrdhlhpvldlysetsaifqlpyekack...........................................
ENSPVAP00000000407  ..............................................................................
ENSPVAP00000009827  ..............................................................................


                         
                         
d1jv2a3               ...
ENSPVAP00000004574  ...
ENSPVAP00000016296  ...
ENSPVAP00000002972  ...
ENSPVAP00000010685  ...
ENSPVAP00000016296  ...
ENSPVAP00000000304  ...
ENSPVAP00000006476  ...
ENSPVAP00000009592  ...
ENSPVAP00000016296  ...
ENSPVAP00000016742  ...
ENSPVAP00000004574  ...
ENSPVAP00000002972  ...
ENSPVAP00000002972  ...
ENSPVAP00000006811  ...
ENSPVAP00000010685  ...
ENSPVAP00000009589  ...
ENSPVAP00000007405  ...
ENSPVAP00000016742  ...
ENSPVAP00000004545  ...
ENSPVAP00000000198  ...
ENSPVAP00000012850  rnc
ENSPVAP00000000304  ...
ENSPVAP00000004574  ...
ENSPVAP00000006811  ...
ENSPVAP00000009484  ...
ENSPVAP00000006476  ...
ENSPVAP00000000662  ...
ENSPVAP00000009592  ...
ENSPVAP00000000304  ...
ENSPVAP00000009827  ...
ENSPVAP00000013645  ...
ENSPVAP00000008837  ...
ENSPVAP00000009484  ...
ENSPVAP00000009589  ...
ENSPVAP00000012018  ...
ENSPVAP00000013645  ...
ENSPVAP00000000407  ...
ENSPVAP00000016742  ...
ENSPVAP00000006476  ...
ENSPVAP00000006098  ...
ENSPVAP00000006811  ...
ENSPVAP00000009589  ...
ENSPVAP00000009592  ...
ENSPVAP00000010199  ...
ENSPVAP00000004545  ...
ENSPVAP00000013440  ...
ENSPVAP00000010199  ...
ENSPVAP00000004545  ...
ENSPVAP00000000662  ...
ENSPVAP00000013645  ...
ENSPVAP00000012850  ...
ENSPVAP00000000662  ...
ENSPVAP00000012018  ...
ENSPVAP00000000407  ...
ENSPVAP00000009827  ...


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Model: 0047692 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

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Exclude sequences shorter than: residues



Jump to [ Top of page · Alignments · Refine alignments ]

Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Canis familiaris 58 (pseudogenes) - Dog
NoYes   Danio rerio 58 (pseudogenes) - Zebrafish
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Saccoglossus kowalevskii v3.0
NoYes   Petromyzon marinus 76_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Lepisosteus oculatus 76 - Spotted gar
NoYes   Gadus morhua 76_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 76_4 - Torafugu
NoYes   Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes   Oryzias latipes 76_1 - Japanese medaka
NoYes   Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes   Poecilia formosa 76 - Amazon molly
NoYes   Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes   Astyanax mexicanus 76 - Mexican tetra
NoYes   Danio rerio 76_9 - Zebrafish
NoYes   Oikopleura dioica
NoYes   Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 76 - Vase tunicate
NoYes   Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes   Adineta vaga
NoYes   Octopus bimaculoides 280
NoYes   Crassostrea gigas 22 - Pacific oyster
NoYes   Lottia gigantea - Owl limpet
NoYes   Helobdella robusta
NoYes   Capitella sp. I
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Daphnia pulex - Common water flea
NoYes   Strigamia maritima 22
NoYes   Sarcoptes scabiei
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Pristionchus pacificus
NoYes   Meloidogyne incognita - Southern root-knot nematode
NoYes   Meloidogyne hapla
NoYes   Onchocerca volvulus 22
NoYes   Brugia malayi WS250 - Agent of lymphatic filariasis
NoYes   Caenorhabditis japonica
NoYes   Caenorhabditis brenneri
NoYes   Caenorhabditis remanei
NoYes   Caenorhabditis elegans 76_235 - Roundworm
NoYes   Caenorhabditis briggsae 2
NoYes   Trichinella spiralis 22
NoYes   Hymenolepis microstoma
NoYes   Echinococcus multilocularis
NoYes   Echinococcus granulosus
NoYes   Taenia solium - Pork tapeworm
NoYes   Schistosoma mansoni
NoYes   Mnemiopsis leidyi - Sea walnut
NoYes   Thelohanellus kitauei
NoYes   Acropora digitifera v1.0
NoYes   Nematostella vectensis 1.0 - Starlet sea anemone
NoYes   Hydra vulgaris
NoYes   Amphimedon queenslandica
NoYes   Trichoplax adhaerens
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Ascaris suum Victoria/Ghent - Pig roundworm
NoYes   Caenorhabditis elegans WormBase WS218 - Roundworm
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Petromyzon marinus 69_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Gadus morhua 69_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 69_4 - Torafugu
NoYes   Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes   Oryzias latipes 69_1 - Japanese medaka
NoYes   Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes   Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes   Danio rerio 69_9 - Zebrafish
NoYes   Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 69 - Vase tunicate
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Caenorhabditis elegans 69_215 - Roundworm
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   Heliconius numata
NoYes   Loa loa v3.3 - Eye worm
NoYes   Wuchereria bancrofti v1.0 - Agent of lymphatic filariasis
NoYes   Brugia malayi v1.0 - Agent of lymphatic filariasis
NoYes   Endophytic microbiome from Rice (meta-genome)
NoYes   Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)
NoYes   NCBI 2017_08 genome
NoYes   Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)
NoYes   STRING v9.0.5 (STRING)
NoYes   Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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