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  Home > SCOP hierarchy > Domain combination - 101912,103575,48726,_gap_

Domain combinations for 101912,103575,48726,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101912 - Sema domain
103575 - Plexin repeat
48726 - Immunoglobulin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   23
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   12
Pongo_abelii_76_2   (Sumatran orangutan)   8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   10
Macaca_mulatta_76_1   (Rhesus monkey)   13
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   13
Otolemur_garnettii_76_3   (Small-eared galago)   8
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   18
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_76_1   (Giant panda)   10
Canis_familiaris_76_3.1   (Dog)   7
Felis_catus_76_6.2   (Domestic cat)   8
Equus_caballus_76_2   (Horse)   8
Myotis_lucifugus_76_2.0   (Little brown bat)   8
Pteropus_vampyrus_76_1   (Large flying fox)   7
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   5
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   11
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21
Takifugu_rubripes_76_4   (Torafugu)   50
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   18
Oryzias_latipes_76_1   (Japanese medaka)   16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   11
Poecilia_formosa_76   (Amazon molly)   16
Oreochromis_niloticus_76_1.0   (Nile tilapia)   18
Astyanax_mexicanus_76   (Mexican tetra)   12
Danio_rerio_76_9   (Zebrafish)   21
Octopus_bimaculoides_280 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   0
Tetranychus_urticae_   (Two-spotted spider mite)   1
Onchocerca_volvulus_22 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   6
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   9
Pongo_abelii_69_2   (Sumatran orangutan)   7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7
Macaca_mulatta_69_1   (Rhesus monkey)   7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   8
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_69_1   (Giant panda)   7
Canis_familiaris_69_3.1   (Dog)   6
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   8
Pteropus_vampyrus_69_1   (Large flying fox)   7
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   9
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   17
Takifugu_rubripes_69_4   (Torafugu)   15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13
Oryzias_latipes_69_1   (Japanese medaka)   13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   11
Oreochromis_niloticus_69_1.0   (Nile tilapia)   13
Danio_rerio_69_9   (Zebrafish)   13
Drosophila_melanogaster_69_5   (Fruit fly)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   25
Homo_sapiens__(NCBI_version)   (Human)   11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8
TargetDB__(Targets) 26
STRING_v9.0.5_(STRING) 199
Uniprot_2018_03_genome 13890
NCBI_2017_08_genome 3707

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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