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  Home > SCOP hierarchy > Domain combination - 102324

Domain combinations for 102324 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

102324 - F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Pristionchus_pacificus_ 0
Caenorhabditis_japonica_ 0
Caenorhabditis_remanei_ 0
Rhizopus_oryzae_RA_99-880_ 0
Malassezia_globosa_CBS_7966_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 0
Catenaria_anguillulae_PL171_v1.0 0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Glycine_max_v109   (Soybean)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aegilops_tauschii_22 0
Trypanosoma_congolense_2.4 0
Pythium_arrhenomanes_ATCC_12531_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_capsici_ 0
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 0
Babesia_bovis_T2Bo_ 0
Theileria_annulata 0
Trichomonas_vaginalis_ 0
Emiliania_huxleyi_CCMP1516_ 0
Synechococcus_sp._PCC_6312 0
Streptosporangium_roseum_DSM_43021 0
Saccharopolyspora_erythraea_NRRL_2338 0
Rhodococcus_equi_103S 0
Mycobacterium_sp._JLS 0
Ammonifex_degensii_KC4 0
Enterococcus_faecium_Aus0004 0
Lactobacillus_brevis_ATCC_367 0
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 0
Alistipes_finegoldii_DSM_17242 0
Zunongwangia_profunda_SM-A87 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Pirellula_staleyi_DSM_6068 0
Ilyobacter_polytropus_DSM_2926 0
Bdellovibrio_bacteriovorus_HD100 0
Chromobacterium_violaceum_ATCC_12472 0
Leptothrix_cholodnii_SP-6 0
Burkholderia_ambifaria_AMMD 0
Alicycliphilus_denitrificans_K601 0
Janthinobacterium_sp._Marseille 0
Methylotenera_mobilis_JLW8 0
Pseudomonas_putida_F1 0
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 1
Methanoregula_boonei_6A8 1
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 1
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Methanopyrus_kandleri_AV19 1
Ferroglobus_placidus_DSM_10642 1
Archaeoglobus_profundus_DSM_5631 1
Archaeoglobus_veneficus_SNP6 1
Archaeoglobus_fulgidus_DSM_4304 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
methanocaldococcus_infernus_ME 1
Methanocaldococcus_jannaschii_DSM_2661 1
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Methanothermus_fervidus_DSM_2088 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 0
Gordonibacter_pamelaeae_7-10-1-b 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Actinoplanes_friuliensis_DSM_7358 0
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_tuberculosis_str._Haarlem/NITR202 0
Clostridium_thermocellum_DSM_1313 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Lactobacillus_brevis_KB290 0
Alistipes_shahii_WAL_8301 0
Bdellovibrio_exovorus_JSS 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Pandoraea_pnomenusa_3kgm 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 0
Pseudomonas_aeruginosa_DK2 0
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Archaeoglobus_sulfaticallidus_PM70-1 1
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_C6 1
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome     Number
Oryctolagus_cuniculus_69_2   (Rabbit)   0

Others
Genome     Number
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
PDB_chains_(SCOP_1.75)_(PDB) 1
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 26
Protein_Data_Bank_(all_PDB_sequenc) 54
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 162
NCBI_2017_08_genome 229
TargetDB__(Targets) 0
Uniprot_2018_03_genome 265

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.