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Domain combinations for 103657,_gap_,50044,_gap_,50044,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

103657 - BAR/IMD domain-like
50044 - SH3-domain
50044 - SH3-domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ochotona_princeps_76   (American pika)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Danio_rerio_76_9   (Zebrafish)   2
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Schistosoma_mansoni_ 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0

Longest transcript per gene
Genome     Number
Ochotona_princeps_69   (American pika)   1
Felis_catus_69   (Domestic cat)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Danio_rerio_69_9   (Zebrafish)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 840
NCBI_2017_08_genome 113

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.