Domain combinations for 109640,_gap_,57667,57667,57667,57667,57667,57667,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

109640 - KRAB domain (Kruppel-associated box)
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Strains

Genome		Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	0

Longest transcript per gene

Genome		Number
Homo_sapiens_69_37	(Human)	3
Pan_troglodytes_69_2.1.4	(Chimpanzee)	3
Gorilla_gorilla_69_3.1	(Western gorilla)	8
Pongo_abelii_69_2	(Sumatran orangutan)	4
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	5
Macaca_mulatta_69_1	(Rhesus monkey)	2
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	2
Otolemur_garnettii_69_3	(Small-eared galago)	3
Microcebus_murinus_69_1	(Gray mouse lemur)	1
Mus_musculus_69_38	(House mouse)	5
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	0
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	1
Oryctolagus_cuniculus_69_2	(Rabbit)	1
Ochotona_princeps_69	(American pika)	2
Tupaia_belangeri_69	(Northern tree shrew)	2
Bos_taurus_69_3.1	(Cattle)	1
Vicugna_pacos_69_1	(Alpaca)	1
Tursiops_truncatus_69_1	(Bottlenose dolphin)	5
Mustela_putorius_furo_69_1.0	(Domestic ferret)	3
Ailuropoda_melanoleuca_69_1	(Giant panda)	3
Canis_familiaris_69_3.1	(Dog)	4
Felis_catus_69	(Domestic cat)	3
Equus_caballus_69_2	(Horse)	3
Pteropus_vampyrus_69_1	(Large flying fox)	1
Sorex_araneus_69_1	(European shrew)	0
Echinops_telfairi_69	(Small Madagascar hedgehog)	3
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	2
Macropus_eugenii_69_1.0	(Tammar wallaby)	1
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	3
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	1
Gallus_gallus_69_2	(Chicken)	0
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	1

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Others

Genome		Number
Homo_sapiens_75_37_(old_version_GRC)	(Human)	9
Homo_sapiens__(NCBI_version)	(Human)	6
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	5
STRING_v9.0.5_(STRING)		31
Uniprot_2018_03_genome		7801
NCBI_2017_08_genome		803

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