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Domain combinations for 111418,81321,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

111418 - Hormone receptor domain
81321 - Family A G protein-coupled receptor-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   13
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_76_3.1   (Western gorilla)   9
Pongo_abelii_76_2   (Sumatran orangutan)   5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   4
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10
Otolemur_garnettii_76_3   (Small-eared galago)   4
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   10
Mus_musculus_76_38   (House mouse)   11
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   4
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   8
Felis_catus_76_6.2   (Domestic cat)   8
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   5
Pteropus_vampyrus_76_1   (Large flying fox)   3
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   7
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Saccoglossus_kowalevskii_v3.0 3
Meleagris_gallopavo_76_2   (Turkey)   5
Gallus_gallus_76_4   (Chicken)   6
Anas_platyrhynchos_76_1.0   (Mallard)   8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   7
Lepisosteus_oculatus_76   (Spotted gar)   10
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10
Takifugu_rubripes_76_4   (Torafugu)   30
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12
Oryzias_latipes_76_1   (Japanese medaka)   12
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   16
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   4
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 2
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 2
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   7
Pongo_abelii_69_2   (Sumatran orangutan)   5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_69_3   (Small-eared galago)   4
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   5
Mus_musculus_69_38   (House mouse)   5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   3
Bos_taurus_69_3.1   (Cattle)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   4
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   7
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   5
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   3
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Meleagris_gallopavo_69_2   (Turkey)   5
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   10
Oryzias_latipes_69_1   (Japanese medaka)   10
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10
Danio_rerio_69_9   (Zebrafish)   8
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   12
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Uniprot_2018_03_genome 7398
NCBI_2017_08_genome 3007
Protein_Data_Bank_(all_PDB_sequenc) 2
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 149

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.