SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 140371 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

140371 - Vng1086c-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_virilis_1.2 0
Rhodnius_prolixus_22 0
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Caenorhabditis_japonica_ 0
Amphimedon_queenslandica 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Fusarium_verticillioides_7600_ 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_glaucus 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_flavus_NRRL3357_ 0
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Schizosaccharomyces_japonicus_yFS275_ 0
Dictyostelium_discoideum 0
Eucalyptus_grandis_v201   (Rose gum)   0
Gossypium_raimondii_v221 0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Prunus_persica_v139   (Peach)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Triticum_aestivum_22   (Bread wheat)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Phytophthora_capsici_ 0
Fragilariopsis_cylindrus 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Calothrix_sp._PCC_7507 0
Mycoplasma_penetrans_HF-2 0
Desulfitobacterium_hafniense_Y51 0
Clostridium_lentocellum_DSM_5427 0
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 0
Paenibacillus_sp._JDR-2 0
Psychromonas_sp._CNPT3 0
Shigella_sonnei_Ss046 0
Shigella_dysenteriae_Sd197 0
Shigella_boydii_CDC_3083-94 0
Thermosphaera_aggregans_DSM_11486 0
halophilic_archaeon_DL31 3
Methanocella_arvoryzae_MRE50 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 2
Methanoregula_boonei_6A8 2
Methanospirillum_hungatei_JF-1 2
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 2
Methanoculleus_bourgensis_MS2 2
Methanoculleus_marisnigri_JR1 1
Methanopyrus_kandleri_AV19 1
Ferroglobus_placidus_DSM_10642 1
Archaeoglobus_profundus_DSM_5631 1
Archaeoglobus_veneficus_SNP6 2
Archaeoglobus_fulgidus_DSM_4304 2
Salinarchaeum_sp._Harcht-Bsk1 2
Halopiger_xanaduensis_SH-6 2
Haloterrigena_turkmenica_DSM_5511 2
Natrinema_sp._J7-2 2
Natrialba_magadii_ATCC_43099 2
Halorubrum_lacusprofundi_ATCC_49239 3
Haloquadratum_walsbyi_DSM_16790 2
Halogeometricum_borinquense_DSM_11551 3
Haloferax_mediterranei_ATCC_33500 3
Haloferax_volcanii_DS2 3
Halomicrobium_mukohataei_DSM_12286 2
Halorhabdus_utahensis_DSM_12940 3
Natronomonas_pharaonis_DSM_2160 2
Haloarcula_hispanica_ATCC_33960 3
Haloarcula_marismortui_ATCC_43049 3
Halalkalicoccus_jeotgali_B3 2
Halobacterium_salinarum_R1 2
Halobacterium_sp._NRC-1 2
Methanotorris_igneus_Kol_5 2
Methanocaldococcus_sp._FS406-22 2
Methanocaldococcus_fervens_AG86 2
Methanocaldococcus_vulcanius_M7 2
methanocaldococcus_infernus_ME 2
Methanocaldococcus_jannaschii_DSM_2661 2
Methanothermococcus_okinawensis_IH1 2
Methanococcus_aeolicus_Nankai-3 2
Methanococcus_maripaludis_C5 2
Methanococcus_voltae_A3 3
Methanococcus_vannielii_SB 2
Methanothermus_fervidus_DSM_2088 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1

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Strains
Genome     Number
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Crinalium_epipsammum_PCC_9333 0
Spiroplasma_apis_B31 0
Desulfitobacterium_hafniense_DCB-2 0
Bacillus_thuringiensis_HD-771 0
Bacillus_thuringiensis_HD-789 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_B4264 0
Bacillus_cereus_G9842 0
Bacillus_cereus_Q1 0
Bacillus_cereus_ATCC_10987 0
Psychroflexus_torquis_ATCC_700755 0
Helicobacter_pylori_OK113 0
Helicobacter_pylori_XZ274 0
Helicobacter_pylori_F16 0
Helicobacter_pylori_52 0
Helicobacter_pylori_83 0
Helicobacter_pylori_35A 0
Bradyrhizobium_sp._BTAi1 0
Shigella_sonnei_53G 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._301 0
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 0
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2
Archaeoglobus_sulfaticallidus_PM70-1 1
Halovivax_ruber_XH-70 2
Natrinema_pellirubrum_DSM_15624 3
Natronococcus_occultus_SP4 2
Natronobacterium_gregoryi_SP2 2
Haloquadratum_walsbyi_C23 2
Halorhabdus_tiamatea_SARL4B 2
Natronomonas_moolapensis_8.8.11 2
Haloarcula_hispanica_N601 3
Methanococcus_maripaludis_X1 2
Methanococcus_maripaludis_C6 2
Methanococcus_maripaludis_C7 2
Methanococcus_maripaludis_S2 2
Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Danio_rerio_69_9   (Zebrafish)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 1
Protozoadb_2010_08_(Protozoadb) 0
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0
PDB_chains_(SCOP_1.75)_(PDB) 1
Protein_Data_Bank_(all_PDB_sequenc) 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6
TargetDB__(Targets) 13
STRING_v9.0.5_(STRING) 54
Uniprot_2018_03_genome 736
NCBI_2017_08_genome 831

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