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Domain combinations for 140860,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

140860 - Pseudo ankyrin repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Procavia_capensis_76_1   (Cape rock hyrax)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Danio_rerio_76_9   (Zebrafish)   1
Adineta_vaga 2
Capitella_sp._I_ 0
Nasonia_vitripennis_   (Jewel wasp)   0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Hydra_vulgaris 1
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Sporobolomyces_roseus_IAM_13481_ 1
Heterobasidion_annosum_ 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Neurospora_discreta_FGSC_8579_ 0
Nectria_haematococca_mpVI_ 0
Sclerotinia_sclerotiorum_ 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Catenaria_anguillulae_PL171_v1.0 12
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 1
Gossypium_raimondii_v221 1
Citrus_sinensis_v154   (Sweet orange)   0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Arabidopsis_thaliana_10   (Thale cress)   1
Phaseolus_vulgaris_v186   (French bean)   0
Malus_domestica_v196   (Apple)   2
Linum_usitatissimum_v200   (Flax)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 11
Micromonas_pusilla_CCMP1545_v3.0 1
Ectocarpus_siliculosus 1
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_sojae_1.1 1
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Emiliania_huxleyi_CCMP1516_ 0
Capnocytophaga_canimorsus_Cc5 0
Legionella_longbeachae_NSW150 0
Legionella_pneumophila_str._Corby 0

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Strains
Genome     Number
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Bdellovibrio_bacteriovorus_str._Tiberius 1
Rickettsia_rickettsii_str._Arizona 0
Rickettsia_rickettsii_str._Hauke 0
Rickettsia_rickettsii_str._Hino 0
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_2300/99_Alcoy 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Bos_taurus_69_3.1   (Cattle)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Malus_x_domestica_(Duplicate)   (Apple)   2
UniProt__viral_sequences_(Viral) 7
NCBI_viral_sequences_(Viral) 21
Protein_Data_Bank_(all_PDB_sequenc) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 21
Uniprot_2018_03_genome 666
TargetDB__(Targets) 1
NCBI_2017_08_genome 174

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