SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 143749 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

143749 - Phage tail protein-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 0
Nasonia_vitripennis_   (Jewel wasp)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Drosophila_grimshawi_1.3 0
Drosophila_ananassae_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Mortierella_verticillata_NRRL_6337_ 0
Rhizomucor_miehei_CAU432_ 0
Piloderma_croceum_F_1598_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Galerina_marginata_v1.0 0
Schizophyllum_commune_ 0
Chaetomium_globosum_CBS_148.51_ 0
Verticillium_albo-atrum_VaMs.102_ 0
Trichoderma_atroviride_ 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Selaginella_moellendorffii_ 0
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Phaseolus_vulgaris_v186   (French bean)   0
Malus_domestica_v196   (Apple)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Actinidia_chinensis_Hongyang_ 0
Oryza_meridionalis_22 0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Albugo_laibachii_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_capsici_ 0
Pseudanabaena_sp._PCC_7367 0
Synechococcus_sp._PCC_6312 0
Nostoc_punctiforme_PCC_73102 0
Streptomyces_sp._PAMC26508 0
Mycobacterium_gilvum_PYR-GCK 0
Deinococcus_geothermalis_DSM_11300 0
Deinococcus_radiodurans_R1 0
Desulfotomaculum_ruminis_DSM_2154 0
Clostridium_kluyveri_DSM_555 0
Lactobacillus_salivarius_CECT_5713 0
Brevibacillus_brevis_NBRC_100599 0
Geobacillus_thermodenitrificans_NG80-2 0
Ignavibacterium_album_JCM_16511 1
Chloroherpeton_thalassium_ATCC_35110 1
Spirochaeta_caldaria_DSM_7334 0
Flexistipes_sinusarabici_DSM_4947 0
Syntrophobacter_fumaroxidans_MPOB 0
Haliangium_ochraceum_DSM_14365 0
Corallococcus_coralloides_DSM_2259 0
Pseudogulbenkiania_sp._NH8B 0
Laribacter_hongkongensis_HLHK9 1
Chromobacterium_violaceum_ATCC_12472 2
Neisseria_meningitidis_alpha14 0
Neisseria_meningitidis_FAM18 0
Neisseria_lactamica_020-06 0
Cupriavidus_necator_N-1 0
Ralstonia_solanacearum_CFBP2957 1
Alicycliphilus_denitrificans_K601 0
Bordetella_pertussis_Tohama_I 0
Bordetella_bronchiseptica_RB50 0
Thiobacillus_denitrificans_ATCC_25259 0
Magnetococcus_marinus_MC-1 0
Pseudovibrio_sp._FO-BEG1 1
Ruegeria_pomeroyi_DSS-3 0
Rhodospirillum_centenum_SW 0
Sinorhizobium_meliloti_AK83 0
Bartonella_tribocorum_CIP_105476 0
Gallibacterium_anatis_UMN179 1
Haemophilus_parasuis_SH0165 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1
Marinobacter_adhaerens_HP15 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Halomonas_elongata_DSM_2581 0
Methylococcus_capsulatus_str._Bath 0
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Rahnella_sp._Y9602 1
Yersinia_pseudotuberculosis_IP_31758 0
Serratia_sp._AS12 1
Serratia_plymuthica_AS9 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 1
Pectobacterium_atrosepticum_SCRI1043 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Sodalis_glossinidius_str._'morsitans' 1
Shigella_sonnei_Ss046 1
Shigella_flexneri_5_str._8401 2
Shigella_boydii_CDC_3083-94 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 2
Escherichia_fergusonii_ATCC_35469 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1
Citrobacter_rodentium_ICC168 1
Acinetobacter_sp._ADP1 0
Sulfolobus_solfataricus_P2 0
Archaeoglobus_profundus_DSM_5631 0
Haloterrigena_turkmenica_DSM_5511 0
Natrialba_magadii_ATCC_43099 0
Haloarcula_hispanica_ATCC_33960 0
Methanobrevibacter_ruminantium_M1 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Cyanothece_sp._ATCC_51142 0
Spiroplasma_syrphidicola_EA-1 0
Streptomyces_davawensis_JCM_4913 0
Mycobacterium_gilvum_Spyr1 0
Clostridium_kluyveri_NBRC_12016 0
Lactobacillus_johnsonii_N6.2 0
Lactobacillus_johnsonii_DPC_6026 0
Lactobacillus_johnsonii_NCC_533 0
Lactobacillus_salivarius_UCC118 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_SA20-06 0
Thermobacillus_composti_KWC4 0
Geobacillus_sp._C56-T3 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Leptospirillum_ferriphilum_ML-04 0
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Neisseria_meningitidis_G2136 0
Burkholderia_cenocepacia_J2315 1
Bordetella_pertussis_CS 0
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Hyphomicrobium_nitrativorans_NL23 0
Hyphomicrobium_denitrificans_1NES1 0
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 0
Simiduia_agarivorans_SA1_=_DSM_21679 0
Mannheimia_succiniciproducens_MBEL55E 1
Mannheimia_haemolytica_USMARC_2286 2
Mannheimia_haemolytica_M42548 3
Mannheimia_haemolytica_D174 2
Mannheimia_haemolytica_D171 1
Mannheimia_haemolytica_D153 3
Mannheimia_haemolytica_USDA-ARS-USMARC-183 3
Mannheimia_haemolytica_USDA-ARS-USMARC-185 2
Pasteurella_multocida_subsp._multocida_str._HN06 1
Haemophilus_parasuis_ZJ0906 2
Haemophilus_influenzae_F3031 0
Haemophilus_influenzae_10810 1
Actinobacillus_suis_H91-0380 2
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 2
Vibrio_sp._EJY3 1
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Spiribacter_salinus_M19-40 0
Edwardsiella_tarda_FL6-60 1
Rahnella_aquatilis_HX2 2
Serratia_sp._AS13 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1
Cronobacter_sakazakii_SP291 0
Cronobacter_sakazakii_ATCC_BAA-894 0
Shigella_sonnei_53G 2
Shigella_flexneri_2002017 2
Shigella_flexneri_2a_str._2457T 1
Shigella_flexneri_2a_str._301 2
Shigella_boydii_Sb227 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 3
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 3
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 3
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 3
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 2
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 2
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1
Klebsiella_oxytoca_KCTC_1686 1
Enterobacter_aerogenes_EA1509E 2
Escherichia_coli_E._coli_PMV-1 3
Escherichia_coli_JJ1886 3
Escherichia_coli_LY180 1
Escherichia_coli_APEC_O78 0
Escherichia_coli_O7:K1_str._CE10 6
Escherichia_coli_O104:H4_str._2009EL-2050 3
Escherichia_coli_O104:H4_str._2009EL-2071 4
Escherichia_coli_O104:H4_str._2011C-3493 3
Escherichia_coli_NA114 2
Escherichia_coli_str._'clone_D_i2' 2
Escherichia_coli_str._'clone_D_i14' 2
Escherichia_coli_UM146 2
Escherichia_coli_042 2
Escherichia_coli_Xuzhou21 4
Escherichia_coli_IHE3034 4
Escherichia_coli_UMNK88 1
Escherichia_coli_O83:H1_str._NRG_857C 2
Escherichia_coli_ABU_83972 2
Escherichia_coli_KO11FL 1
Escherichia_coli_KO11FL 1
Escherichia_coli_LF82 2
Escherichia_coli_ED1a 2
Escherichia_coli_IAI39 5
Escherichia_coli_UMN026 4
Escherichia_coli_55989 4
Escherichia_coli_S88 4
Escherichia_coli_IAI1 2
Escherichia_coli_W 1
Escherichia_coli_W 1
Escherichia_coli_ATCC_8739 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_SE15 1
Escherichia_coli_SE11 3
Escherichia_coli_APEC_O1 2
Escherichia_coli_O103:H2_str._12009 6
Escherichia_coli_UTI89 3
Escherichia_coli_536 1
Escherichia_coli_ETEC_H10407 1
Escherichia_coli_O55:H7_str._RM12579 7
Escherichia_coli_O55:H7_str._CB9615 7
Escherichia_coli_O26:H11_str._11368 6
Escherichia_coli_CFT073 3
Escherichia_coli_O111:H-_str._11128 5
Escherichia_coli_O127:H6_str._E2348/69 2
Escherichia_coli_O157:H7_str._TW14359 5
Escherichia_coli_O157:H7_str._EC4115 6
Escherichia_coli_O157:H7_str._Sakai 4
Escherichia_coli_O157:H7_str._EDL933 3
Escherichia_coli_BW2952 1
Enterobacter_cloacae_SCF1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_RP73 0
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Methylophaga_sp._JAM7 0
Archaeoglobus_sulfaticallidus_PM70-1 0
Haloarcula_hispanica_N601 0

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Longest transcript per gene
Genome     Number
Ciona_intestinalis_69   (Vase tunicate)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Malus_x_domestica_(Duplicate)   (Apple)   0
NCBI_plasmid_sequences_(Plasmids) 3
PDB_chains_(SCOP_1.75)_(PDB) 2
UniProt__viral_sequences_(Viral) 9
NCBI_viral_sequences_(Viral) 16
Protein_Data_Bank_(all_PDB_sequenc) 29
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 64
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 120
Uniprot_2018_03_genome 1234
NCBI_2017_08_genome 26863

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