SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46785,46785,48008 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
46785 - "Winged helix" DNA-binding domain
48008 - GntR ligand-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Amphimedon_queenslandica 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Acidaminococcus_intestini_RyC-MR95 1
Acidaminococcus_fermentans_DSM_20731 1
Planctomyces_brasiliensis_DSM_5305 1
Planctomyces_limnophilus_DSM_3776 0
Terriglobus_saanensis_SP1PR4 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_H16 1
Burkholderia_vietnamiensis_G4 1
Verminephrobacter_eiseniae_EF01-2 1
Rhodoferax_ferrireducens_T118 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Achromobacter_xylosoxidans_A8 1
Rhodobacter_sphaeroides_ATCC_17029 1
Paracoccus_denitrificans_PD1222 1
Tistrella_mobilis_KA081020-065 1
Acidiphilium_multivorum_AIU301 1
Acidiphilium_cryptum_JF-5 1
Starkeya_novella_DSM_506 1
Xanthobacter_autotrophicus_Py2 2
Azorhizobium_caulinodans_ORS_571 0
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 2
Sinorhizobium_meliloti_AK83 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 3
Agrobacterium_radiobacter_K84 4
Agrobacterium_sp._H13-3 1
Agrobacterium_vitis_S4 1
Mesorhizobium_opportunistum_WSM2075 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Pelagibacterium_halotolerans_B2 1
Halomonas_elongata_DSM_2581 1
Rahnella_sp._Y9602 1
Serratia_sp._AS12 1
Serratia_sp._ATCC_39006 2
Serratia_plymuthica_AS9 1
Serratia_proteamaculans_568 1
Dickeya_zeae_Ech1591 1
Pectobacterium_atrosepticum_SCRI1043 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Pantoea_sp._At-9b 3
Pantoea_vagans_C9-1 1
Pantoea_ananatis_LMG_20103 2
Erwinia_billingiae_Eb661 2
Escherichia_blattae_DSM_4481 1
Klebsiella_oxytoca_E718 2
Klebsiella_variicola_At-22 2
Enterobacter_asburiae_LF7a 1
Citrobacter_rodentium_ICC168 1
Pseudomonas_sp._TKP 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_fulva_12-X 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 2
Acinetobacter_sp._ADP1 1

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Strains
Genome     Number
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Variovorax_paradoxus_EPS 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Leisingera_methylohalidivorans_DSM_14336 1
Rhodobacter_sphaeroides_KD131 1
Rhodobacter_sphaeroides_ATCC_17025 1
Rhodobacter_sphaeroides_2.4.1 1
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 2
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 2
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_tropici_CIAT_899 4
Rhizobium_leguminosarum_bv._trifolii_WSM2304 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Mesorhizobium_australicum_WSM2073 1
Bradyrhizobium_japonicum_USDA_6 1
Rahnella_aquatilis_HX2 1
Serratia_sp._AS13 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_liquefaciens_ATCC_27592 1
Dickeya_dadantii_3937 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1
Pantoea_ananatis_LMG_5342 2
Pantoea_ananatis_PA13 2
Pantoea_ananatis_AJ13355 2
Shigella_sonnei_53G 1
Klebsiella_oxytoca_KCTC_1686 2
Klebsiella_pneumoniae_JM45 1
Klebsiella_pneumoniae_342 2
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1
Escherichia_coli_E24377A 1
Escherichia_coli_JJ1886 1
Escherichia_coli_LY180 1
Escherichia_coli_APEC_O78 1
Escherichia_coli_O104:H4_str._2009EL-2050 1
Escherichia_coli_O104:H4_str._2009EL-2071 1
Escherichia_coli_O104:H4_str._2011C-3493 1
Escherichia_coli_NA114 1
Escherichia_coli_P12b 1
Escherichia_coli_042 1
Escherichia_coli_UMNK88 1
Escherichia_coli_KO11FL 1
Escherichia_coli_KO11FL 1
Escherichia_coli_UMN026 1
Escherichia_coli_55989 1
Escherichia_coli_S88 1
Escherichia_coli_IAI1 1
Escherichia_coli_W 1
Escherichia_coli_W 1
Escherichia_coli_DH1 1
Escherichia_coli_DH1 1
Escherichia_coli_ATCC_8739 1
Escherichia_coli_SMS-3-5 1
Escherichia_coli_SE15 1
Escherichia_coli_SE11 1
Escherichia_coli_O103:H2_str._12009 1
Escherichia_coli_HS 1
Escherichia_coli_ETEC_H10407 1
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 1
Escherichia_coli_O111:H-_str._11128 1
Escherichia_coli_O157:H7_str._TW14359 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_BW2952 1
Escherichia_coli_str._K-12_substr._MG1655 1
Escherichia_coli_str._K-12_substr._W3110 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 2
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_mendocina_NK-01 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 19
STRING_v9.0.5_(STRING) 60
Uniprot_2018_03_genome 8670
NCBI_2017_08_genome 10674
TargetDB__(Targets) 3

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