SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46785,47979,50037 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
47979 - Iron-dependent repressor protein, dimerization domain
50037 - C-terminal domain of transcriptional repressors

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Thermobaculum_terrenum_ATCC_BAA-798 2
Conexibacter_woesei_DSM_14684 2
Rubrobacter_xylanophilus_DSM_9941 1
Ilumatobacter_coccineus 1
Thermobispora_bispora_DSM_43833 1
Nakamurella_multipartita_DSM_44233 1
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 1
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 2
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 1
Thermobifida_fusca_YX 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 2
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 1
Saccharomonospora_viridis_DSM_43017 2
Pseudonocardia_dioxanivorans_CB1190 2
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 2
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 1
Propionibacterium_propionicum_F0230a 2
Propionibacterium_acnes_SK137 1
Microlunatus_phosphovorus_NM-1 2
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 2
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Segniliparus_rotundus_DSM_44985 2
Tsukamurella_paurometabola_DSM_20162 2
Gordonia_sp._KTR9 2
Gordonia_polyisoprenivorans_VH2 5
Gordonia_bronchialis_DSM_43247 2
Rhodococcus_jostii_RHA1 2
Rhodococcus_equi_103S 2
Rhodococcus_opacus_B4 2
Rhodococcus_erythropolis_PR4 2
Nocardia_cyriacigeorgica_GUH-2 2
Nocardia_farcinica_IFM_10152 2
Amycolicicoccus_subflavus_DQS3-9A1 2
Mycobacterium_massiliense_str._GO_06 2
Mycobacterium_abscessus_ATCC_19977 2
Mycobacterium_sp._JLS 2
Mycobacterium_intracellulare_ATCC_13950 2
Mycobacterium_avium_104 2
Mycobacterium_vanbaalenii_PYR-1 2
Mycobacterium_canettii_CIPT_140010059 2
Mycobacterium_africanum_GM041182 2
Mycobacterium_tuberculosis_KZN_1435 2
Mycobacterium_tuberculosis 2
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 2
Mycobacterium_rhodesiae_NBB3 2
Mycobacterium_ulcerans_Agy99 2
Mycobacterium_gilvum_PYR-GCK 2
Mycobacterium_chubuense_NBB4 2
Mycobacterium_marinum_M 2
Mycobacterium_smegmatis_str._MC2_155 2
Mycobacterium_leprae_Br4923 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_aurimucosum_ATCC_700975 3
Corynebacterium_kroppenstedtii_DSM_44385 2
Corynebacterium_efficiens_YS-314 2
Corynebacterium_ulcerans_0102 2
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 2
Corynebacterium_variabile_DSM_44702 2
Corynebacterium_pseudotuberculosis_316 2
Corynebacterium_glutamicum_R 4
Corynebacterium_diphtheriae_NCTC_13129 2
Tropheryma_whipplei_TW08/27 1
Sanguibacter_keddieii_DSM_10542 1
Kytococcus_sedentarius_DSM_20547 1
Beutenbergia_cavernae_DSM_12333 2
Leifsonia_xyli_subsp._xyli_str._CTCB07 2
Microbacterium_testaceum_StLB037 2
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2
Jonesia_denitrificans_DSM_20603 1
Intrasporangium_calvum_DSM_43043 1
Brachybacterium_faecium_DSM_4810 2
Isoptericola_variabilis_225 2
Xylanimonas_cellulosilytica_DSM_15894 2
Cellulomonas_flavigena_DSM_20109 2
Cellulomonas_fimi_ATCC_484 2
[Cellvibrio]_gilvus_ATCC_13127 2
Arthrobacter_phenanthrenivorans_Sphe3 2
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 2
Arthrobacter_arilaitensis_Re117 1
Kocuria_rhizophila_DC2201 2
Rothia_mucilaginosa_DY-18 2
Rothia_dentocariosa_ATCC_17931 2
Arthrobacter_sp._Rue61a 2
Arthrobacter_sp._FB24 2
Renibacterium_salmoninarum_ATCC_33209 2
Micrococcus_luteus_NCTC_2665 1
Arcanobacterium_haemolyticum_DSM_20595 1
Mobiluncus_curtisii_ATCC_43063 1
Actinomyces_sp._F0330 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2
Dehalococcoides_ethenogenes_195 1
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 2
Roseiflexus_castenholzii_DSM_13941 2
Chloroflexus_sp._MS-G 3
Chloroflexus_sp._Y-400-fl 3
Chloroflexus_aggregans_DSM_9485 4
Chloroflexus_aurantiacus_J-10-fl 3
Truepera_radiovictrix_DSM_17093 1
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 2
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_proteolyticus_MRP 1
Oceanithermus_profundus_DSM_14977 1
Marinithermus_hydrothermalis_DSM_14884 1
Meiothermus_silvanus_DSM_9946 2
Meiothermus_ruber_DSM_1279 1
Thermus_sp._CCB_US3_UF1 1
Thermus_scotoductus_SA-01 1
Thermus_thermophilus_HB27 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Thermodesulfobium_narugense_DSM_14796 1
Ammonifex_degensii_KC4 1
Halanaerobium_praevalens_DSM_2228 1
Tetragenococcus_halophilus_NBRC_12172 1
Melissococcus_plutonius_DAT561 1
Enterococcus_sp._7L76 1
Enterococcus_hirae_ATCC_9790 1
Enterococcus_faecium_Aus0004 1
Enterococcus_faecalis_62 1
Lactobacillus_salivarius_CECT_5713 1
Lactobacillus_fermentum_IFO_3956 1
Lactobacillus_sakei_subsp._sakei_23K 1
Lactobacillus_reuteri_DSM_20016 1
Lactobacillus_plantarum_JDM1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Staphylococcus_epidermidis_RP62A 1
Gemmatimonas_aurantiaca_T-27 1
Ignavibacterium_album_JCM_16511 1
Chlorobium_limicola_DSM_245 1
Chlorobium_tepidum_TLS 1
Chloroherpeton_thalassium_ATCC_35110 1
Prosthecochloris_aestuarii_DSM_271 1
Saprospira_grandis_str._Lewin 1
Salinibacter_ruber_M8 1
Rhodothermus_marinus_DSM_4252 1
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 1
Pedobacter_saltans_DSM_12145 1
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 1
Fluviicola_taffensis_DSM_16823 1
Croceibacter_atlanticus_HTCC2559 1
Polaribacter_sp._MED152 1
Ornithobacterium_rhinotracheale_DSM_15997 1
Capnocytophaga_ochracea_DSM_7271 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_brasiliensis_DSM_5305 1
Planctomyces_limnophilus_DSM_3776 1
Pirellula_staleyi_DSM_6068 1
Methylacidiphilum_infernorum_V4 1
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 1
Aminobacterium_colombiense_DSM_12261 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1
Spirochaeta_africana_DSM_8902 1
Petrotoga_mobilis_SJ95 1
Thermotoga_lettingae_TMO 1
Dictyoglomus_turgidum_DSM_6724 1
Caldisericum_exile_AZM16c01 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Acidobacterium_capsulatum_ATCC_51196 1
Desulfobacca_acetoxidans_DSM_11109 2
Halothiobacillus_neapolitanus_c2 1
Thiomicrospira_crunogena_XCL-2 1
Thioalkalimicrobium_cyclicum_ALM1 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_acidocaldarius_DSM_639 1
halophilic_archaeon_DL31 1
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 2
Methanocorpusculum_labreanum_Z 1
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Thermoplasmatales_archaeon_BRNA1 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 2
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 2
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Haloquadratum_walsbyi_DSM_16790 0
Halogeometricum_borinquense_DSM_11551 2
Haloferax_mediterranei_ATCC_33500 2
Haloferax_volcanii_DS2 1
Halomicrobium_mukohataei_DSM_12286 1
Halorhabdus_utahensis_DSM_12940 1
Natronomonas_pharaonis_DSM_2160 2
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1
Halobacterium_salinarum_R1 1
Halobacterium_sp._NRC-1 1
Methanothermus_fervidus_DSM_2088 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1

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Strains
Genome     Number
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 1
Nocardiopsis_alba_ATCC_BAA-2165 2
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_orientalis_HCCB10007 2
Propionibacterium_avidum_44067 2
Propionibacterium_acnes_ATCC_11828 1
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_266 1
Propionibacterium_acnes_KPA171202 1
Propionibacterium_acidipropionici_ATCC_4875 2
Actinoplanes_friuliensis_DSM_7358 1
Rhodococcus_pyridinivorans_SB3094 2
Rhodococcus_erythropolis_CCM2595 2
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_sp._MOTT36Y 2
Mycobacterium_sp._JDM601 2
Mycobacterium_abscessus_subsp._bolletii_50594 2
Mycobacterium_liflandii_128FXT 2
Mycobacterium_sp._KMS 2
Mycobacterium_sp._MCS 2
Mycobacterium_yongonense_05-1390 2
Mycobacterium_intracellulare_MOTT-64 2
Mycobacterium_indicus_pranii_MTCC_9506 2
Mycobacterium_intracellulare_MOTT-02 2
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1
Mycobacterium_canettii_CIPT_140070017 2
Mycobacterium_canettii_CIPT_140060008 2
Mycobacterium_canettii_CIPT_140070008 2
Mycobacterium_canettii_CIPT_140070010 2
Mycobacterium_tuberculosis_EAI5/NITR206 2
Mycobacterium_tuberculosis_EAI5 2
Mycobacterium_tuberculosis_str._Beijing/NITR203 2
Mycobacterium_tuberculosis_UT205 2
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 2
Mycobacterium_tuberculosis_CTRI-2 2
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 2
Mycobacterium_tuberculosis_KZN_605 2
Mycobacterium_tuberculosis_KZN_4207 2
Mycobacterium_tuberculosis_CCDC5180 2
Mycobacterium_tuberculosis_CCDC5079 2
Mycobacterium_tuberculosis_CCDC5079 2
Mycobacterium_tuberculosis_H37Ra 2
Mycobacterium_tuberculosis_str._Haarlem/NITR202 2
Mycobacterium_tuberculosis_str._Haarlem 2
Mycobacterium_tuberculosis_F11 2
Mycobacterium_tuberculosis_H37Rv 2
Mycobacterium_tuberculosis_CDC1551 2
Mycobacterium_bovis_AF2122/97 2
Mycobacterium_bovis_BCG_str._Korea_1168P 2
Mycobacterium_bovis_BCG_str._Mexico 2
Mycobacterium_bovis_BCG_str._Tokyo_172 2
Mycobacterium_gilvum_Spyr1 2
Mycobacterium_smegmatis_str._MC2_155 2
Mycobacterium_leprae_TN 1
Mycobacterium_kansasii_ATCC_12478 2
Corynebacterium_maris_DSM_45190 2
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 2
Corynebacterium_terpenotabidum_Y-11 2
Corynebacterium_ulcerans_BR-AD22 2
Corynebacterium_ulcerans_809 2
Corynebacterium_urealyticum_DSM_7111 1
Corynebacterium_argentoratense_DSM_44202 2
Corynebacterium_callunae_DSM_20147 2
Corynebacterium_pseudotuberculosis_258 2
Corynebacterium_pseudotuberculosis_Cp162 2
Corynebacterium_pseudotuberculosis_P54B96 2
Corynebacterium_pseudotuberculosis_267 2
Corynebacterium_pseudotuberculosis_1/06-A 2
Corynebacterium_pseudotuberculosis_42/02-A 2
Corynebacterium_pseudotuberculosis_3/99-5 2
Corynebacterium_pseudotuberculosis_31 1
Corynebacterium_pseudotuberculosis_CIP_52.97 2
Corynebacterium_pseudotuberculosis_PAT10 2
Corynebacterium_pseudotuberculosis_I19 2
Corynebacterium_pseudotuberculosis_FRC41 2
Corynebacterium_pseudotuberculosis_C231 2
Corynebacterium_pseudotuberculosis_1002 2
Corynebacterium_glutamicum_MB001 3
Corynebacterium_glutamicum_SCgG2 3
Corynebacterium_glutamicum_SCgG1 3
Corynebacterium_glutamicum_ATCC_13032 3
Corynebacterium_glutamicum_ATCC_13032 3
Corynebacterium_glutamicum_ATCC_13032 3
Corynebacterium_diphtheriae_BH8 2
Corynebacterium_diphtheriae_INCA_402 2
Corynebacterium_diphtheriae_VA01 2
Corynebacterium_diphtheriae_HC04 2
Corynebacterium_diphtheriae_HC03 2
Corynebacterium_diphtheriae_HC02 2
Corynebacterium_diphtheriae_HC01 2
Corynebacterium_diphtheriae_241 2
Corynebacterium_diphtheriae_CDCE_8392 2
Corynebacterium_diphtheriae_PW8 2
Corynebacterium_diphtheriae_C7_(beta) 2
Corynebacterium_diphtheriae_31A 2
Tropheryma_whipplei_str._Twist 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 3
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Actinomyces_graevenitzii_C83_ 1
Actinomyces_odontolyticus_ATCC_17982 2
Actinomyces_viscosus_C505 1
Chthonomonas_calidirosea_T49 2
Deinococcus_peraridilitoris_DSM_19664 1
Thermus_oshimai_JL-2 1
Thermus_thermophilus_JL-18 1
Thermus_thermophilus_SG0.5JP17-16 1
Thermus_thermophilus_HB8 1
Erysipelothrix_rhusiopathiae_SY1027 1
Melissococcus_plutonius_ATCC_35311 1
Enterococcus_faecium_Aus0085 1
Enterococcus_faecium_NRRL_B-2354 1
Enterococcus_faecium_DO 1
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 1
Lactobacillus_salivarius_UCC118 1
Lactobacillus_fermentum_F-6 1
Lactobacillus_reuteri_TD1 1
Lactobacillus_reuteri_I5007 1
Lactobacillus_reuteri_JCM_1112 1
Lactobacillus_reuteri_SD2112 1
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Lactobacillus_plantarum_WCFS1 1
Streptococcus_salivarius_CCHSS3 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Staphylococcus_epidermidis_ATCC_12228 1
Salinibacter_ruber_DSM_13855 1
Rhodothermus_marinus_SG0.5JP17-172 1
Singulisphaera_acidiphila_DSM_18658 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 2
Halovivax_ruber_XH-70 2
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 2
Natronobacterium_gregoryi_SP2 2
Haloquadratum_walsbyi_C23 0
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 1
Methanobacterium_sp._SWAN-1 1

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Others
Genome     Number
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 2
NCBI_plasmid_sequences_(Plasmids) 11
TargetDB__(Targets) 6
PDB_chains_(SCOP_1.75)_(PDB) 8
Protein_Data_Bank_(all_PDB_sequenc) 49
STRING_v9.0.5_(STRING) 202
Uniprot_2018_03_genome 32820
NCBI_2017_08_genome 24116

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