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Domain combinations for 46785,48008,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
48008 - GntR ligand-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Caenorhabditis_japonica_ 0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Phytophthora_capsici_ 0
Gloeocapsa_sp._PCC_7428 0
Acidimicrobium_ferrooxidans_DSM_10331 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 1
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 0
Kitasatospora_setae_KM-6054 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Pseudonocardia_dioxanivorans_CB1190 1
Microlunatus_phosphovorus_NM-1 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Kocuria_rhizophila_DC2201 1
Rothia_mucilaginosa_DY-18 1
Rothia_dentocariosa_ATCC_17931 1
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 1
Planctomyces_limnophilus_DSM_3776 0
Thermovirga_lienii_DSM_17291 1
Granulicella_mallensis_MP5ACTX8 1
Terriglobus_roseus_DSM_18391 1
Desulfomonile_tiedjei_DSM_6799 1
Desulfococcus_oleovorans_Hxd3 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 2
Cupriavidus_necator_N-1 1
Burkholderia_sp._RPE64 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Verminephrobacter_eiseniae_EF01-2 2
Alicycliphilus_denitrificans_K601 1
Delftia_sp._Cs1-4 2
Delftia_acidovorans_SPH-1 2
Polaromonas_sp._JS666 3
Variovorax_paradoxus_S110 1
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._KKS102 1
Acidovorax_citrulli_AAC00-1 1
Janthinobacterium_sp._Marseille 1
Advenella_kashmirensis_WT001 1
Bordetella_petrii_DSM_12804 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 1
Bordetella_bronchiseptica_RB50 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingomonas_wittichii_RW1 1
Hyphomonas_neptunium_ATCC_15444 1
Paracoccus_denitrificans_PD1222 1
Tistrella_mobilis_KA081020-065 0
Polymorphum_gilvum_SL003B-26A1 1
Starkeya_novella_DSM_506 2
Xanthobacter_autotrophicus_Py2 1
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_nodulans_ORS_2060 1
Methylobacterium_radiotolerans_JCM_2831 1
Brucella_canis_ATCC_23365 1
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Mesorhizobium_sp._BNC1 1
Mesorhizobium_opportunistum_WSM2075 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Mesorhizobium_loti_MAFF303099 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Bradyrhizobium_japonicum_USDA_110 1
Halothiobacillus_neapolitanus_c2 1
Yersinia_pseudotuberculosis_IP_31758 1
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_atrosepticum_SCRI1043 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Shigella_flexneri_5_str._8401 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Frankia_sp._EuI1c 2
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_collinus_Tu_365 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Propionibacterium_acidipropionici_ATCC_4875 1
Mycobacterium_liflandii_128FXT 1
Mycobacterium_smegmatis_str._MC2_155 1
Clavibacter_michiganensis_subsp._sepedonicus 0
Deinococcus_peraridilitoris_DSM_19664 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2
Burkholderia_phenoliruptrix_BR3459a 2
Pandoraea_pnomenusa_3kgm 2
Burkholderia_sp._CCGE1003 2
Burkholderia_sp._CCGE1001 2
Burkholderia_sp._KJ006 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Alicycliphilus_denitrificans_BC 1
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 3
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Octadecabacter_arcticus_238 1
Brucella_canis_HSK_A52141 1
Brucella_suis_VBI22 1
Brucella_suis_1330 1
Brucella_suis_1330 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Mesorhizobium_australicum_WSM2073 2
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_japonicum_USDA_6 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Serratia_marcescens_FGI94 1
Shigella_boydii_Sb227 1

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Others
Genome     Number
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 17
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 79
Uniprot_2018_03_genome 8094
NCBI_2017_08_genome 3443

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