SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46785,55785,55785,55785 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Methanocella_arvoryzae_MRE50 0
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 0
Methanosphaerula_palustris_E1-9c 3
Methanospirillum_hungatei_JF-1 2
Methanocorpusculum_labreanum_Z 0
Methanoplanus_petrolearius_DSM_11571 0
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Halopiger_xanaduensis_SH-6 0
Haloterrigena_turkmenica_DSM_5511 0
Natrialba_magadii_ATCC_43099 0

Strains
Genome     Number
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 6
NCBI_2017_08_genome 13
Uniprot_2018_03_genome 112

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