SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46894,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46894 - C-terminal effector domain of the bipartite response regulators
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Thermobaculum_terrenum_ATCC_BAA-798 0
Gloeobacter_violaceus_PCC_7421 0
Nostoc_sp._PCC_7107 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Conexibacter_woesei_DSM_14684 0
Cryptobacterium_curtum_DSM_15641 0
Eggerthella_sp._YY7918 0
Eggerthella_lenta_DSM_2243 0
Slackia_heliotrinireducens_DSM_20476 1
Coriobacterium_glomerans_PW2 0
Ilumatobacter_coccineus 0
Thermobispora_bispora_DSM_43833 2
Nakamurella_multipartita_DSM_44233 0
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 0
Blastococcus_saxobsidens_DD2 0
Geodermatophilus_obscurus_DSM_43160 0
Kineococcus_radiotolerans_SRS30216 0
Catenulispora_acidiphila_DSM_44928 6
Stackebrandtia_nassauensis_DSM_44728 2
Frankia_symbiont_of_Datisca_glomerata 3
Frankia_sp._EAN1pec 4
Frankia_alni_ACN14a 3
Thermobifida_fusca_YX 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 4
Streptomyces_coelicolor_A3(2) 2
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 3
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 3
Streptomyces_bingchenggensis_BCW-1 5
Streptomyces_violaceusniger_Tu_4113 4
Streptomyces_avermitilis_MA-4680 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2
Actinosynnema_mirum_DSM_43827 2
Saccharomonospora_viridis_DSM_43017 0
Pseudonocardia_dioxanivorans_CB1190 0
Saccharopolyspora_erythraea_NRRL_2338 2
Amycolatopsis_mediterranei_U32 6
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 0
Microlunatus_phosphovorus_NM-1 1
Salinispora_arenicola_CNS-205 2
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 3
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 6
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Tsukamurella_paurometabola_DSM_20162 0
Gordonia_sp._KTR9 0
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 0
Rhodococcus_jostii_RHA1 0
Rhodococcus_equi_103S 0
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 0
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 0
Mycobacterium_massiliense_str._GO_06 1
Mycobacterium_sp._JLS 0
Mycobacterium_intracellulare_ATCC_13950 0
Mycobacterium_avium_104 0
Mycobacterium_vanbaalenii_PYR-1 0
Mycobacterium_canettii_CIPT_140010059 0
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 0
Mycobacterium_ulcerans_Agy99 0
Mycobacterium_gilvum_PYR-GCK 0
Mycobacterium_chubuense_NBB4 0
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 0
Sanguibacter_keddieii_DSM_10542 0
Beutenbergia_cavernae_DSM_12333 0
Intrasporangium_calvum_DSM_43043 0
Xylanimonas_cellulosilytica_DSM_15894 0
Cellulomonas_flavigena_DSM_20109 0
Cellulomonas_fimi_ATCC_484 0
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_chlorophenolicus_A6 0
Arthrobacter_aurescens_TC1 0
Arthrobacter_sp._Rue61a 0
Arthrobacter_sp._FB24 1
Renibacterium_salmoninarum_ATCC_33209 0
Actinomyces_sp._F0330 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Truepera_radiovictrix_DSM_17093 0
Deinococcus_gobiensis_I-0 0
Deinococcus_deserti_VCD115 0
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_proteolyticus_MRP 0
Deinococcus_radiodurans_R1 0
Oceanithermus_profundus_DSM_14977 0
Marinithermus_hydrothermalis_DSM_14884 0
Meiothermus_silvanus_DSM_9946 0
Meiothermus_ruber_DSM_1279 1
Thermus_scotoductus_SA-01 0
Thermus_thermophilus_HB27 0
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Symbiobacterium_thermophilum_IAM_14863 0
Eubacterium_siraeum 1
Ethanoligenens_harbinense_YUAN-3 1
Oscillibacter_valericigenes_Sjm18-20 1
Desulfosporosinus_orientis_DSM_765 0
Desulfitobacterium_hafniense_Y51 0
Desulfitobacterium_dehalogenans_ATCC_51507 0
Desulfotomaculum_ruminis_DSM_2154 0
Acetobacterium_woodii_DSM_1030 0
Eubacterium_limosum_KIST612 1
Clostridium_sticklandii_DSM_519 1
Clostridium_saccharolyticum_WM1 1
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 0
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 0
Syntrophothermus_lipocalidus_DSM_12680 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Alkaliphilus_metalliredigens_QYMF 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_cellulovorans_743B 0
Acetohalobium_arabaticum_DSM_5501 0
Halanaerobium_hydrogeniformans 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_polymyxa_M1 0
Bacillus_selenitireducens_MLS10 0
Lysinibacillus_sphaericus_C3-41 0
Geobacillus_sp._GHH01 0
Bacillus_halodurans_C-125 0
Bacillus_pseudofirmus_OF4 0
Bacillus_cellulosilyticus_DSM_2522 0
Gemmatimonas_aurantiaca_T-27 0
Chloroherpeton_thalassium_ATCC_35110 0
Haliscomenobacter_hydrossis_DSM_1100 0
Opitutus_terrae_PB90-1 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Petrotoga_mobilis_SJ95 1
Thermotoga_lettingae_TMO 1
Thermotoga_thermarum_DSM_5069 1
Thermotoga_sp._RQ2 1
Thermotoga_petrophila_RKU-1 1
Thermotoga_neapolitana_DSM_4359 1
Thermotoga_maritima_MSB8 1
Terriglobus_roseus_DSM_18391 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1
Desulfobacterium_autotrophicum_HRM2 0
Geobacter_uraniireducens_Rf4 0
Geobacter_bemidjiensis_Bem 0
Pelobacter_propionicus_DSM_2379 0
Anaeromyxobacter_sp._Fw109-5 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Leptothrix_cholodnii_SP-6 0
Ralstonia_eutropha_JMP134 0
Cupriavidus_necator_N-1 0
Ralstonia_eutropha_H16 0
Burkholderia_sp._CCGE1002 0
Pusillimonas_sp._T7-7 0
Bordetella_petrii_DSM_12804 0
Bordetella_bronchiseptica_RB50 0
Nitrosomonas_europaea_ATCC_19718 1
Caulobacter_segnis_ATCC_21756 0
Maricaulis_maris_MCS10 1
Jannaschia_sp._CCS1 0
Roseobacter_litoralis_Och_149 1
Sinorhizobium_medicae_WSM419 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_loti_MAFF303099 0
Bradyrhizobium_japonicum_USDA_110 0
Methylocystis_sp._SC2 1
Cellvibrio_japonicus_Ueda107 1
Shewanella_piezotolerans_WP3 0
Shewanella_denitrificans_OS217 0
Shewanella_woodyi_ATCC_51908 0
Pseudoxanthomonas_suwonensis_11-1 1
Xanthomonas_campestris_pv._campestris_str._B100 0
Thioalkalivibrio_sulfidophilus_HL-EbGr7 0

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Strains
Genome     Number
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Adlercreutzia_equolifaciens_DSM_19450 0
Frankia_sp._EuI1c 4
Frankia_sp._CcI3 1
Nocardiopsis_alba_ATCC_BAA-2165 3
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 4
Streptomyces_davawensis_JCM_4913 4
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 3
Streptomyces_collinus_Tu_365 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2
Saccharothrix_espanaensis_DSM_44229 5
Amycolatopsis_mediterranei_RB 6
Amycolatopsis_mediterranei_S699 6
Amycolatopsis_mediterranei_S699 6
Amycolatopsis_orientalis_HCCB10007 3
Actinoplanes_friuliensis_DSM_7358 3
Rhodococcus_pyridinivorans_SB3094 0
Rhodococcus_erythropolis_CCM2595 0
Nocardia_brasiliensis_ATCC_700358 4
Mycobacterium_sp._MOTT36Y 0
Mycobacterium_sp._JDM601 0
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_liflandii_128FXT 1
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_yongonense_05-1390 0
Mycobacterium_intracellulare_MOTT-64 0
Mycobacterium_indicus_pranii_MTCC_9506 0
Mycobacterium_intracellulare_MOTT-02 0
Mycobacterium_avium_subsp._paratuberculosis_MAP4 0
Mycobacterium_avium_subsp._paratuberculosis_K-10 0
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 0
Mycobacterium_canettii_CIPT_140070008 0
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 0
Mycobacterium_smegmatis_str._MC2_155 0
Mycobacterium_kansasii_ATCC_12478 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 0
Actinomyces_viscosus_C505 0
Chthonomonas_calidirosea_T49 0
Thermus_oshimai_JL-2 0
Thermus_thermophilus_JL-18 0
Thermus_thermophilus_SG0.5JP17-16 0
Thermus_thermophilus_HB8 0
Eubacterium_siraeum_V10Sc8a 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 0
Desulfitobacterium_hafniense_DCB-2 0
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Coprococcus_catus_GD/7 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_pasteurianum_BC1 0
Halobacteroides_halobius_DSM_5150 0
Thermobacillus_composti_KWC4 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Bacillus_amyloliquefaciens_LFB112 0
Bacillus_licheniformis_9945A 0
Bacillus_infantis_NRRL_B-14911 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Emticicia_oligotrophica_DSM_17448 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Thermotoga_maritima_MSB8 1
Desulfobacula_toluolica_Tol2 0
Desulfovibrio_desulfuricans_ND132 0
Anaeromyxobacter_sp._K 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Ralstonia_pickettii_12J 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_GR4 0
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Mesorhizobium_australicum_WSM2073 0
Bradyrhizobium_sp._BTAi1 0
Bradyrhizobium_oligotrophicum_S58 0
Bradyrhizobium_japonicum_USDA_6 1
Simiduia_agarivorans_SA1_=_DSM_21679 0

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Others
Genome     Number
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
NCBI_plasmid_sequences_(Plasmids) 12
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 56
Uniprot_2018_03_genome 8433
NCBI_2017_08_genome 11120
PDB_chains_(SCOP_1.75)_(PDB) 0
Protein_Data_Bank_(all_PDB_sequenc) 0

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