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  Home > SCOP hierarchy > Domain combination - 46934,_gap_,52833,_gap_,54236,_gap_

Domain combinations for 46934,_gap_,52833,_gap_,54236,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46934 - UBA-like
52833 - Thioredoxin-like
54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Melampsora_laricis-populina_ 1
Piloderma_croceum_F_1598_v1.0 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Verticillium_dahliae_VdLs.17_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Penicillium_marneffei_ATCC_18224_ 1
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Musa_balbisiana   (Balbis banana)   1
Phaeodactylum_tricornutumCCAP_1055/1 1

Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 13
Uniprot_2018_03_genome 798

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.