SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46966,46966,51045,47473,_gap_,57850,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46966 - Spectrin repeat
46966 - Spectrin repeat
51045 - WW domain
47473 - EF-hand
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Sorex_araneus_76_1   (European shrew)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   1

Longest transcript per gene
Genome     Number
Sorex_araneus_69_1   (European shrew)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   1

Others
Genome     Number
NCBI_2017_08_genome 0
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 22

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