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  Home > SCOP hierarchy > Domain combination - 47226,_gap_,55052,_gap_,47384,55874,50341

Domain combinations for 47226,_gap_,55052,_gap_,47384,55874,50341 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47226 - Histidine-containing phosphotransfer domain, HPT domain
55052 - CheY-binding domain of CheA
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
50341 - CheW-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selenomonas_sputigena_ATCC_35185 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Clostridium_clariflavum_DSM_19732 1
Clostridium_cellulolyticum_H10 1
Clostridium_thermocellum_ATCC_27405 1
Thermaerobacter_marianensis_DSM_12885 1
butyrate-producing_bacterium_SS3/4 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 1
Dehalobacter_sp._DCA 2
Dehalobacter_sp._CF 2
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Desulfotomaculum_ruminis_DSM_2154 1
Acetobacterium_woodii_DSM_1030 1
Eubacterium_eligens_ATCC_27750 1
Clostridium_saccharolyticum_WM1 1
Clostridium_phytofermentans_ISDg 1
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Syntrophothermus_lipocalidus_DSM_12680 1
Heliobacterium_modesticaldum_Ice1 1
Alkaliphilus_oremlandii_OhILAs 1
Clostridium_sp._BNL1100 1
Clostridium_novyi_NT 1
Clostridium_ljungdahlii_DSM_13528 1
Clostridium_kluyveri_DSM_555 1
Clostridium_beijerinckii_NCIMB_8052 2
Clostridium_cellulovorans_743B 1
Clostridium_acetobutylicum_ATCC_824 1
Lactobacillus_ruminis_ATCC_27782 1
Kyrpidia_tusciae_DSM_2912 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Solibacillus_silvestris_StLB046 1
Bacillus_halodurans_C-125 1
Bacillus_pseudofirmus_OF4 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Marinitoga_piezophila_KA3 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Burkholderia_sp._RPE64 1
Burkholderia_sp._CCGE1002 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Achromobacter_xylosoxidans 1
Chromohalobacter_salexigens_DSM_3043 1
Xenorhabdus_bovienii_SS-2004 1
Xenorhabdus_nematophila_ATCC_19061 1
Proteus_mirabilis_HI4320 1
Yersinia_pestis_Pestoides_F 1
Methanohalobium_evestigatum_Z-7303 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Natronomonas_pharaonis_DSM_2160 1

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Strains
Genome     Number
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_hafniense_DCB-2 1
Roseburia_intestinalis_XB6B4 1
Clostridium_saccharobutylicum_DSM_13864 2
Clostridium_autoethanogenum_DSM_10061 1
Clostridium_kluyveri_NBRC_12016 1
Clostridium_pasteurianum_BC1 1
Clostridium_botulinum_BKT015925 1
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Thermobacillus_composti_KWC4 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Burkholderia_phenoliruptrix_BR3459a 1
Pandoraea_pnomenusa_3kgm 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Proteus_mirabilis_BB2000 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Methanosarcina_mazei_Tuc01 1

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Others
Genome     Number
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 55
Uniprot_2018_03_genome 24165
NCBI_2017_08_genome 2898

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.