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  Home > SCOP hierarchy > Domain combination - 47226,_gap_,55874,50341,_gap_,52172

Domain combinations for 47226,_gap_,55874,50341,_gap_,52172 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47226 - Histidine-containing phosphotransfer domain, HPT domain
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
50341 - CheW-like
52172 - CheY-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 2
Acaryochloris_marina_MBIC11017 2
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 3
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 3
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 4
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 2
Nostoc_punctiforme_PCC_73102 3
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 2
Anabaena_sp._90 1
Acidothermus_cellulolyticus_11B 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aurantiacus_J-10-fl 1
Heliobacterium_modesticaldum_Ice1 1
Gemmatimonas_aurantiaca_T-27 1
Chloroherpeton_thalassium_ATCC_35110 0
Parachlamydia_acanthamoebae_UV-7 0
Treponema_primitia_ZAS-2 1
Treponema_brennaborense_DSM_12168 1
Calditerrivibrio_nitroreducens_DSM_19672 1
Syntrophus_aciditrophicus_SB 1
Desulfomonile_tiedjei_DSM_6799 1
Desulfobulbus_propionicus_DSM_2032 0
Desulfatibacillum_alkenivorans_AK-01 1
Desulfovibrio_salexigens_DSM_2638 1
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 1
Geobacter_bemidjiensis_Bem 1
Geobacter_metallireducens_GS-15 1
Haliangium_ochraceum_DSM_14365 1
Stigmatella_aurantiaca_DW4/3-1 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 0
Azoarcus_sp._KH32C 0
Azoarcus_sp._BH72 0
Aromatoleum_aromaticum_EbN1 0
Dechlorosoma_suillum_PS 0
Pseudogulbenkiania_sp._NH8B 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Methylibium_petroleiphilum_PM1 0
Thiomonas_arsenitoxydans 0
Thiomonas_intermedia_K12 0
Rubrivivax_gelatinosus_IL144 0
Leptothrix_cholodnii_SP-6 0
Burkholderia_phymatum_STM815 1
Ralstonia_eutropha_JMP134 0
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 0
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_pickettii_12D 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 0
Ramlibacter_tataouinensis_TTB310 0
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 0
Variovorax_paradoxus_S110 0
Acidovorax_ebreus_TPSY 0
Acidovorax_sp._KKS102 0
Acidovorax_sp._JS42 0
Comamonas_testosteroni_CNB-2 0
Herminiimonas_arsenicoxydans 0
Collimonas_fungivorans_Ter331 1
Janthinobacterium_sp._Marseille 1
Herbaspirillum_seropedicae_SmR1 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Thiobacillus_denitrificans_ATCC_25259 0
Nitrosospira_multiformis_ATCC_25196 1
Nitrosomonas_sp._Is79A3 0
Nitrosomonas_eutropha_C91 0
Nitrosomonas_europaea_ATCC_19718 0
Methylotenera_versatilis_301 0
Methylotenera_mobilis_JLW8 0
Methylovorus_sp._MP688 0
Methylovorus_glucosetrophus_SIP3-4 0
Methylobacillus_flagellatus_KT 0
Magnetococcus_marinus_MC-1 1
Phenylobacterium_zucineum_HLK1 1
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Starkeya_novella_DSM_506 1
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_populi_BJ001 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_meliloti_AK83 1
Mesorhizobium_sp._BNC1 1
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 0
Marinobacter_adhaerens_HP15 0
Marinobacter_sp._BSs20148 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Kangiella_koreensis_DSM_16069 0
Hahella_chejuensis_KCTC_2396 1
Alcanivorax_borkumensis_SK2 0
Methylococcus_capsulatus_str._Bath 1
Rhodanobacter_denitrificans 0
Pseudoxanthomonas_spadix_BD-a59 0
Stenotrophomonas_maltophilia_K279a 0
Xylella_fastidiosa_M23 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Thioalkalivibrio_sulfidophilus_HL-EbGr7 0
Nitrosococcus_watsonii_C-113 0
Nitrosococcus_halophilus_Nc4 0
Nitrosococcus_oceani_ATCC_19707 0
gamma_proteobacterium_HdN1 0
Pseudomonas_sp._TKP 0
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_entomophila_L48 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_stutzeri_A1501 0
Pseudomonas_fulva_12-X 0
Pseudomonas_putida_F1 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_mendocina_ymp 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Pseudomonas_sp._VLB120 0
Psychrobacter_sp._G 0
Psychrobacter_sp._PRwf-1 0
Psychrobacter_arcticus_273-4 0
Psychrobacter_cryohalolentis_K5 0
Acinetobacter_oleivorans_DR1 0
Acinetobacter_calcoaceticus_PHEA-2 0
Acinetobacter_baumannii_ATCC_17978 0
Acinetobacter_sp._ADP1 0
Methylophaga_sp._JAM1 0
Methanosphaerula_palustris_E1-9c 1
Methanospirillum_hungatei_JF-1 1

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 3
Chamaesiphon_minutus_PCC_6605 3
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 2
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 2
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 2
Cyanothece_sp._PCC_8801 3
Cyanobacterium_stanieri_PCC_7202 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 2
Stanieria_cyanosphaera_PCC_7437 2
Calothrix_parietina_Calothrix_sp._PCC_6303 2
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 2
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Geobacter_sp._M18 3
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 1
Ralstonia_pickettii_12J 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 0
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Variovorax_paradoxus_B4 0
Variovorax_paradoxus_EPS 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Nitrosomonas_sp._AL212 0
Sulfuricella_denitrificans_skB26 0
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Simiduia_agarivorans_SA1_=_DSM_21679 0
Alcanivorax_dieselolei_B5 0
Thalassolituus_oleivorans_MIL-1 0
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_M12 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_stutzeri_CCUG_29243 0
Pseudomonas_stutzeri_DSM_10701 0
Pseudomonas_stutzeri_DSM_4166 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_resinovorans_NBRC_106553 0
Pseudomonas_mendocina_NK-01 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_RP73 0
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 0
Pseudomonas_aeruginosa_PA7 0
Pseudomonas_aeruginosa_PAO1 0
Acinetobacter_genomosp._13TU__RUH2624 0
Acinetobacter_sp.__SH024 0
Acinetobacter_calcoaceticus_ruh2202 0
Acinetobacter_baumannii_ZW85-1 0
Acinetobacter_baumannii_TYTH-1 0
Acinetobacter_baumannii_BJAB0868 0
Acinetobacter_baumannii_BJAB0715 0
Acinetobacter_baumannii_BJAB07104 0
Acinetobacter_baumannii_TCDC-AB0715 0
Acinetobacter_baumannii_D1279779 0
Acinetobacter_baumannii_MDR-TJ 0
Acinetobacter_baumannii_1656-2 0
Acinetobacter_baumannii__ATCC_19606 0
Acinetobacter_baumannii_AB307-0294 0
Acinetobacter_baumannii_AYE 0
Acinetobacter_baumannii_MDR-ZJ06 0
Acinetobacter_baumannii_AB0057 0
Acinetobacter_baumannii_ACICU 0
Acinetobacter_radioresistens__SH164 0
Acinetobacter_junii__SH205 0
Acinetobacter_johnsonii__SH046 0
Acinetobacter_lwoffii__SH145 0
Methylophaga_sp._JAM7 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 11
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 77
Uniprot_2018_03_genome 18740
NCBI_2017_08_genome 2527

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.