SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47413,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47413 - lambda repressor-like DNA-binding domains
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Eggerthella_lenta_DSM_2243 1
Thermobispora_bispora_DSM_43833 3
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 2
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 1
Thermobifida_fusca_YX 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Thermomonospora_curvata_DSM_43183 6
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._SirexAA-E 2
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 9
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 1
Saccharomonospora_viridis_DSM_43017 2
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 3
Kribbella_flavida_DSM_17836 0
Salinispora_arenicola_CNS-205 3
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 2
Actinoplanes_sp._N902-109 2
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 0
Nocardia_farcinica_IFM_10152 2
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 0
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_chlorophenolicus_A6 0
Arthrobacter_aurescens_TC1 0
Arthrobacter_sp._Rue61a 0
Arthrobacter_sp._FB24 0
Anaerococcus_prevotii_DSM_20548 2
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Sulfobacillus_acidophilus_DSM_10332 0
Desulfosporosinus_acidiphilus_SJ4 1
Desulfitobacterium_hafniense_Y51 1
Acetobacterium_woodii_DSM_1030 1
Clostridium_difficile_630 0
Clostridium_sticklandii_DSM_519 1
Clostridium_phytofermentans_ISDg 5
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Butyrivibrio_proteoclasticus_B316 2
Alkaliphilus_oremlandii_OhILAs 1
Clostridium_novyi_NT 0
Clostridium_ljungdahlii_DSM_13528 3
Clostridium_kluyveri_DSM_555 1
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_tetani_E88 0
Clostridium_perfringens_ATCC_13124 0
Clostridium_cellulovorans_743B 1
Clostridium_botulinum_A_str._ATCC_3502 1
Clostridium_acetobutylicum_ATCC_824 5
Thermoanaerobacterium_xylanolyticum_LX-11 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Thermoanaerobacter_tengcongensis_MB4 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 2
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_sp._X514 1
Thermoanaerobacter_italicus_Ab9 2
Thermoanaerobacter_wiegelii_Rt8.B1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Melissococcus_plutonius_DAT561 5
Enterococcus_sp._7L76 3
Enterococcus_faecium_Aus0004 1
Enterococcus_faecalis_62 5
Oenococcus_oeni_PSU-1 1
Leuconostoc_sp._C2 1
Leuconostoc_kimchii_IMSNU_11154 1
Leuconostoc_citreum_KM20 1
Lactobacillus_casei_ATCC_334 2
Lactobacillus_crispatus_ST1 1
Lactobacillus_rhamnosus_Lc_705 1
Lactobacillus_johnsonii_FI9785 1
Lactobacillus_fermentum_IFO_3956 1
Lactobacillus_amylovorus_GRL1118 1
Lactobacillus_sakei_subsp._sakei_23K 1
Lactobacillus_reuteri_DSM_20016 1
Lactobacillus_plantarum_JDM1 2
Lactobacillus_buchneri_NRRL_B-30929 2
Lactobacillus_buchneri 3
Lactobacillus_brevis_ATCC_367 3
Lactobacillus_acidophilus_30SC 1
Lactococcus_lactis_subsp._cremoris_MG1363 1
Streptococcus_sp._I-G2 1
Streptococcus_gallolyticus_UCN34 1
Streptococcus_pseudopneumoniae_IS7493 1
Streptococcus_mitis_B6 1
Streptococcus_pneumoniae_P1031 1
Streptococcus_agalactiae_A909 1
Streptococcus_thermophilus_LMD-9 1
Exiguobacterium_sp._MH3 4
Exiguobacterium_sp._AT1b 2
Exiguobacterium_sibiricum_255-15 2
Kyrpidia_tusciae_DSM_2912 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 0
Brevibacillus_brevis_NBRC_100599 3
Paenibacillus_polymyxa_M1 0
Bacillus_selenitireducens_MLS10 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_innocua_Clip11262 2
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 2
Listeria_ivanovii_subsp._ivanovii_PAM_55 3
Solibacillus_silvestris_StLB046 4
Lysinibacillus_sphaericus_C3-41 2
Oceanobacillus_iheyensis_HTE831 3
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 1
Geobacillus_sp._GHH01 0
Halobacillus_halophilus_DSM_2266 2
Bacillus_halodurans_C-125 0
Bacillus_weihenstephanensis_KBAB4 3
Bacillus_thuringiensis_str._Al_Hakam 5
Bacillus_cereus_03BB102 4
Bacillus_anthracis_str._A0248 4
Bacillus_pseudofirmus_OF4 3
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 2
Bacillus_pumilus_SAFR-032 1
Bacillus_megaterium_DSM_319 2
Macrococcus_caseolyticus_JCSC5402 1
Ilyobacter_polytropus_DSM_2926 1

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Strains
Genome     Number
Frankia_sp._EuI1c 0
Frankia_sp._CcI3 2
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 3
Streptomyces_davawensis_JCM_4913 0
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 3
Amycolatopsis_mediterranei_RB 3
Amycolatopsis_mediterranei_S699 3
Amycolatopsis_mediterranei_S699 3
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 1
Chthonomonas_calidirosea_T49 0
Erysipelothrix_rhusiopathiae_SY1027 1
Faecalibacterium_prausnitzii_L2-6 1
Sulfobacillus_acidophilus_TPY 0
Desulfitobacterium_hafniense_DCB-2 1
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Roseburia_intestinalis_XB6B4 1
Clostridium_saccharobutylicum_DSM_13864 2
Clostridium_autoethanogenum_DSM_10061 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 5
Clostridium_kluyveri_NBRC_12016 1
Clostridium_tetani_genome_12124569 1
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 1
Clostridium_pasteurianum_BC1 1
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_BKT015925 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_E3_str._Alaska_E43 1
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Clostridium_acetobutylicum_DSM_1731 6
Clostridium_acetobutylicum_EA_2018 6
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1
Thermoanaerobacter_sp._X513 1
Carnobacterium_maltaromaticum_LMA28 12
Melissococcus_plutonius_ATCC_35311 3
Enterococcus_casseliflavus_EC20 2
Enterococcus_faecium_Aus0085 1
Enterococcus_faecium_NRRL_B-2354 1
Enterococcus_faecium_DO 1
Enterococcus_faecalis_str._Symbioflor_1 3
Enterococcus_faecalis_D32 5
Enterococcus_faecalis_OG1RF 4
Enterococcus_faecalis_V583 4
Leuconostoc_carnosum_JB16 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 2
Lactobacillus_casei_LOCK919 1
Lactobacillus_casei_W56 3
Lactobacillus_casei_LC2W 3
Lactobacillus_casei_BD-II 3
Lactobacillus_casei_BL23 3
Lactobacillus_casei_str._Zhang 1
Lactobacillus_rhamnosus_LOCK908 1
Lactobacillus_rhamnosus_LOCK900 1
Lactobacillus_rhamnosus_ATCC_8530 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_johnsonii_N6.2 1
Lactobacillus_johnsonii_DPC_6026 2
Lactobacillus_johnsonii_NCC_533 1
Lactobacillus_fermentum_F-6 1
Lactobacillus_fermentum_CECT_5716 1
Lactobacillus_amylovorus_GRL_1112 1
Lactobacillus_reuteri_TD1 1
Lactobacillus_reuteri_I5007 1
Lactobacillus_reuteri_JCM_1112 1
Lactobacillus_reuteri_SD2112 1
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Lactobacillus_plantarum_WCFS1 1
Lactobacillus_brevis_KB290 3
Pediococcus_pentosaceus_SL4 1
Lactococcus_lactis_subsp._cremoris_KW2 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1
Lactococcus_lactis_subsp._cremoris_A76 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1
Lactococcus_lactis_subsp._cremoris_SK11 1
Streptococcus_intermedius_B196 1
Streptococcus_anginosus_C238 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 1
Streptococcus_iniae_SF1 1
Streptococcus_pneumoniae_SPN994039 1
Streptococcus_pneumoniae_SPN994038 1
Streptococcus_pneumoniae_SPN034183 1
Streptococcus_pneumoniae_SPN034156 1
Streptococcus_pneumoniae_INV200 1
Streptococcus_pneumoniae_OXC141 1
Streptococcus_pneumoniae_gamPNI0373 1
Streptococcus_pneumoniae_AP200 1
Streptococcus_pneumoniae_ATCC_700669 1
Streptococcus_pneumoniae_CGSP14 1
Streptococcus_pneumoniae_JJA 1
Streptococcus_pneumoniae_Hungary19A-6 1
Streptococcus_pneumoniae_D39 1
Streptococcus_pneumoniae_670-6B 1
Streptococcus_pneumoniae_R6 1
Streptococcus_pneumoniae_TIGR4 1
Streptococcus_agalactiae_ILRI005 1
Streptococcus_agalactiae_09mas018883 1
Streptococcus_agalactiae_2-22 1
Streptococcus_agalactiae_SA20-06 1
Streptococcus_agalactiae_GD201008-001 1
Streptococcus_agalactiae_NEM316 1
Streptococcus_agalactiae_2603V/R 1
Streptococcus_suis_D12 1
Exiguobacterium_antarcticum_B7 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_SC2 0
Listeria_monocytogenes_EGD_sequence 2
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Listeria_monocytogenes_serotype_4b_str._LL195 2
Listeria_monocytogenes_07PF0776 2
Listeria_monocytogenes_M7 2
Listeria_monocytogenes_J1-220 2
Listeria_monocytogenes_J1816 2
Listeria_monocytogenes_SLCC2376 2
Listeria_monocytogenes_SLCC5850 2
Listeria_monocytogenes_ATCC_19117 2
Listeria_monocytogenes_L312 2
Listeria_monocytogenes_SLCC2479 2
Listeria_monocytogenes_SLCC7179 2
Listeria_monocytogenes_SLCC2540 3
Listeria_monocytogenes_SLCC2378 2
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 2
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 2
Listeria_monocytogenes_serotype_7_str._SLCC2482 2
Listeria_monocytogenes_08-5578 2
Listeria_monocytogenes_08-5923 2
Listeria_monocytogenes_L99 2
Listeria_monocytogenes_HCC23 2
Listeria_monocytogenes_10403S 2
Listeria_monocytogenes_J0161 2
Listeria_monocytogenes_Finland_1998 2
Listeria_monocytogenes_FSL_R2-561 2
Listeria_monocytogenes_serotype_4b_str._F2365 2
Listeria_monocytogenes_EGD-e 2
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Bacillus_infantis_NRRL_B-14911 3
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 2
Bacillus_toyonensis_BCT-7112 3
Bacillus_thuringiensis_HD-771 5
Bacillus_thuringiensis_HD-789 5
Bacillus_thuringiensis_MC28 7
Bacillus_thuringiensis_serovar_chinensis_CT-43 7
Bacillus_thuringiensis_YBT-1518 6
Bacillus_thuringiensis_Bt407 7
Bacillus_thuringiensis_serovar_konkukian_str._97-27 5
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 4
Bacillus_thuringiensis_BMB171 8
Bacillus_thuringiensis_serovar_finitimus_YBT-020 7
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 7
Bacillus_cereus_FRI-35 6
Bacillus_cereus_biovar_anthracis_str._CI 5
Bacillus_cereus_AH820 5
Bacillus_cereus_AH187 6
Bacillus_cereus_B4264 7
Bacillus_cereus_G9842 6
Bacillus_cereus_Q1 5
Bacillus_cereus_F837/76 4
Bacillus_cereus_NC7401 6
Bacillus_cereus_E33L 7
Bacillus_cereus_ATCC_14579 5
Bacillus_cereus_ATCC_10987 5
Bacillus_anthracis_str._H9401 3
Bacillus_anthracis_str._CDC_684 4
Bacillus_anthracis_str._'Ames_Ancestor' 4
Bacillus_anthracis_str._Sterne 4
Bacillus_anthracis_str._Ames 4
Bacillus_megaterium_WSH-002 2
Bacillus_megaterium_QM_B1551 2
Staphylococcus_aureus_CA-347 1
Bdellovibrio_bacteriovorus_str._Tiberius 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 32
TargetDB__(Targets) 32
Protein_Data_Bank_(all_PDB_sequenc) 49
STRING_v9.0.5_(STRING) 210
Uniprot_2018_03_genome 18774
NCBI_2017_08_genome 25513
PDB_chains_(SCOP_1.75)_(PDB) 3
NCBI_viral_sequences_(Viral) 3

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