SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47986,48726,52129,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47986 - DEATH domain
48726 - Immunoglobulin
52129 - Caspase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Anolis_carolinensis_76_2.0   (Green anole)   1
Pristionchus_pacificus_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 0

Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   1
STRING_v9.0.5_(STRING) 4
NCBI_2017_08_genome 19
Uniprot_2018_03_genome 490
TargetDB__(Targets) 1

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