SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 48403,52058,52540,_gap_,56112,50978,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48403 - Ankyrin repeat
52058 - L domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
56112 - Protein kinase-like (PK-like)
50978 - WD40 repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   1
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Sus_scrofa_76_10.2   (Pig)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Rattus_norvegicus_69_3.4   (Norway rat)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Sus_scrofa_69_10.2   (Pig)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
STRING_v9.0.5_(STRING) 9
Uniprot_2018_03_genome 972
NCBI_2017_08_genome 122

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]