SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - 48403,_gap_

Domain combinations for 48403,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48403 - Ankyrin repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   207
Pan_troglodytes_76_2.1.4   (Chimpanzee)   52
Gorilla_gorilla_76_3.1   (Western gorilla)   68
Pongo_abelii_76_2   (Sumatran orangutan)   42
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   39
Papio_anubis_76   (Olive baboon)   55
Macaca_mulatta_76_1   (Rhesus monkey)   72
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   105
Otolemur_garnettii_76_3   (Small-eared galago)   47
Microcebus_murinus_76_1   (Gray mouse lemur)   36
Rattus_norvegicus_76_5.0   (Norway rat)   58
Mus_musculus_76_38   (House mouse)   95
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   36
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   43
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   42
Cavia_porcellus_76_3   (Domestic guinea pig)   49
Oryctolagus_cuniculus_76_2   (Rabbit)   38
Ochotona_princeps_76   (American pika)   34
Tupaia_belangeri_76   (Northern tree shrew)   34
Sus_scrofa_76_10.2   (Pig)   57
Bos_taurus_76_3.1   (Cattle)   59
Ovis_aries_76_3.1   (Sheep)   47
Vicugna_pacos_76_1   (Alpaca)   26
Tursiops_truncatus_76_1   (Bottlenose dolphin)   35
Mustela_putorius_furo_76_1.0   (Domestic ferret)   44
Ailuropoda_melanoleuca_76_1   (Giant panda)   44
Canis_familiaris_76_3.1   (Dog)   69
Felis_catus_76_6.2   (Domestic cat)   44
Equus_caballus_76_2   (Horse)   51
Myotis_lucifugus_76_2.0   (Little brown bat)   42
Pteropus_vampyrus_76_1   (Large flying fox)   34
Sorex_araneus_76_1   (European shrew)   31
Erinaceus_europaeus_76   (Western European hedgehog)   30
Procavia_capensis_76_1   (Cape rock hyrax)   40
Loxodonta_africana_76_3   (African savanna elephant)   60
Echinops_telfairi_76   (Small Madagascar hedgehog)   28
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   50
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   31
Macropus_eugenii_76_1.0   (Tammar wallaby)   38
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   47
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   36
Ornithorhynchus_anatinus_76_5   (Platypus)   42
Saccoglossus_kowalevskii_v3.0 75
Petromyzon_marinus_76_7.0   (Sea lamprey)   25
Meleagris_gallopavo_76_2   (Turkey)   35
Gallus_gallus_76_4   (Chicken)   32
Anas_platyrhynchos_76_1.0   (Mallard)   32
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   42
Ficedula_albicollis_76_1.0   (Collared flycatcher)   33
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   47
Anolis_carolinensis_76_2.0   (Green anole)   39
Xenopus_laevis_   (African clawed frog)   38
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   57
Latimeria_chalumnae_76_1   (Coelacanth)   55
Lepisosteus_oculatus_76   (Spotted gar)   47
Gadus_morhua_76_1   (Atlantic cod)   54
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   54
Takifugu_rubripes_76_4   (Torafugu)   115
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   49
Oryzias_latipes_76_1   (Japanese medaka)   55
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   43
Poecilia_formosa_76   (Amazon molly)   41
Oreochromis_niloticus_76_1.0   (Nile tilapia)   51
Astyanax_mexicanus_76   (Mexican tetra)   48
Danio_rerio_76_9   (Zebrafish)   84
Oikopleura_dioica 36
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   27
Ciona_intestinalis_76   (Vase tunicate)   24
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   96
Adineta_vaga 91
Octopus_bimaculoides_280 55
Crassostrea_gigas_22   (Pacific oyster)   54
Lottia_gigantea_   (Owl limpet)   39
Helobdella_robusta_ 33
Capitella_sp._I_ 69
Danaus_plexippus_OGS1.0   (Monarch butterfly)   20
Heliconius_melpomene_   (Postman butterfly)   16
Bombyx_mori_   (Domestic silkworm)   22
Nasonia_vitripennis_   (Jewel wasp)   15
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   49
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20
Linepithema_humile_v1.1   (Argentine ant)   18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   22
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   18
Atta_cephalotes_v1.1 19
Camponotus_floridanus_v3.3   (Florida carpenter ant)   19
Lucilia_cuprina   (Australian sheep blowfly)   12
Drosophila_grimshawi_1.3 15
Drosophila_willistoni_1.3 15
Drosophila_pseudoobscura_2.13 13
Drosophila_persimilis_1.3 15
Drosophila_suzukii 12
Drosophila_yakuba_1.3 15
Drosophila_simulans_1.3 12
Drosophila_sechellia_1.3 12
Drosophila_melanogaster_76_5   (Fruit fly)   43
Drosophila_erecta_1.3 12
Drosophila_ananassae_1.3 11
Drosophila_virilis_1.2 14
Drosophila_mojavensis_1.3 15
Megaselia_scalaris_22 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   21
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   28
Anopheles_darlingi_22   (American malaria mosquito)   11
Anopheles_gambiae_49_3j   (African malaria mosquito)   23
Tribolium_castaneum_3.0   (Red flour beetle)   23
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19
Acyrthosiphon_pisum_   (Pea aphid)   12
Rhodnius_prolixus_22 24
Daphnia_pulex_   (Common water flea)   56
Strigamia_maritima_22 20
Sarcoptes_scabiei 10
Tetranychus_urticae_   (Two-spotted spider mite)   15
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   17
Pristionchus_pacificus_ 27
Meloidogyne_incognita_   (Southern root-knot nematode)   14
Meloidogyne_hapla_ 7
Onchocerca_volvulus_22 13
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   20
Caenorhabditis_japonica_ 15
Caenorhabditis_brenneri_ 23
Caenorhabditis_remanei_ 20
Caenorhabditis_elegans_76_235   (Roundworm)   23
Caenorhabditis_briggsae_2 13
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 21
Echinococcus_multilocularis_ 16
Echinococcus_granulosus_ 16
Taenia_solium_   (Pork tapeworm)   21
Schistosoma_mansoni_ 23
Mnemiopsis_leidyi   (Sea walnut)   43
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 48
Nematostella_vectensis_1.0   (Starlet sea anemone)   36
Hydra_vulgaris 40
Amphimedon_queenslandica 67
Trichoplax_adhaerens_ 13
Proterospongia_sp._ATCC_50818_ 39
Monosiga_brevicollis_ 29
Sphaeroforma_arctica_JP610_ 25
Capsaspora_owczarzaki_ATCC_30864_ 16
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 7
Phycomyces_blakesleeanus_ 9
Rhizopus_oryzae_RA_99-880_ 11
Mucor_circinelloides_ 6
Rhizomucor_miehei_CAU432_ 9
Malassezia_globosa_CBS_7966_ 8
Sporisorium_reilianum_22 4
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 5
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 2
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 4
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 5
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 4
Pisolithus_microcarpus_441_v1.0 4
Pisolithus_tinctorius_Marx_270_v1.0 4
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   5
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6
Galerina_marginata_v1.0 9
Hebeloma_cylindrosporum_h7_v2.0 9
Laccaria_bicolor_S238N-H82_ 8
Agaricus_bisporus_var._bisporus_ 4
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 5
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 3
Wolfiporia_cocos_MD-104_SS10__v1.0 7
Fomitopsis_pinicolav1.0 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 7
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 2
Trametes_versicolor_v1.0 4
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 13
Apiospora_montagnei_NRRL_25634_v1.0 13
Magnaporthe_poae_ATCC_64411_22 8
Magnaporthe_grisea_70-15_ 5
Podospora_anserina_ 17
Sporotrichum_thermophile_ATCC_42464_ 5
Thielavia_terrestris_NRRL_8126_ 5
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 10
Neurospora_discreta_FGSC_8579_ 7
Neurospora_crassa_OR74A_ 8
Cryphonectria_parasitica_   (Chestnut blight fungus)   6
Verticillium_albo-atrum_VaMs.102_ 9
Verticillium_dahliae_VdLs.17_ 8
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 11
Fusarium_graminearum_ 13
Nectria_haematococca_mpVI_ 7
Fusarium_oxysporum_f._sp._lycopersici_4286_ 20
Fusarium_verticillioides_7600_ 14
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 6
Trichoderma_reesei_1.2 7
Trichoderma_virens_Gv29-8_ 11
Trichoderma_longibrachiatum_ATCC_18648_v1.0 9
Trichoderma_harzianum_CBS_226.95_v1.0 10
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 7
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 5
Leptosphaeria_maculans_22 5
Setosphaeria_turcica_v1.0 9
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 6
Cochliobolus_carbonum_26-R-13_v1.0 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 8
Pyrenophora_tritici-repentis_ 8
Stagonospora_nodorum_ 7
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 6
Dothistroma_septosporum 4
Septoria_musiva_v1.0 3
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 6
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 9
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6
Microsporum_canis_CBS_113480_ 5
Trichophyton_equinum_CBS_127.97_ 8
Trichophyton_verrucosum_HKI_0517_ 8
Arthroderma_benhamiae_CBS_112371_ 7
Trichophyton_tonsurans_CBS_112818_ 9
Trichophyton_rubrum_CBS_118892_ 6
Uncinocarpus_reesii_1704_ 5
Aspergillus_zonatus_v1.0 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 10
Penicillium_chrysogenum_v1.0 7
Aspergillus_acidus_v1.0 11
Aspergillus_fumigatus_Af293 11
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 9
Aspergillus_versicolor_v1.0 7
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 11
Aspergillus_terreus_NIH2624_ 12
Aspergillus_tubingensis_v1.0 12
Aspergillus_wentii_v1.0 7
Aspergillus_oryzae_RIB40_ 13
Aspergillus_niger_22 12
Aspergillus_niger_ATCC_1015_ 4
Aspergillus_flavus_NRRL3357_ 15
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 8
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   16
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 1
Candida_albicans_SC5314 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 4
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 6
Allomyces_macrogynus_ATCC_38327_ 11
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 6
Dictyostelium_purpureum_ 5
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 14
Pinus_taeda   (Loblolly pine)   26
Picea_abies   (Norway spruce)   12
Eucalyptus_grandis_v201   (Rose gum)   161
Theobroma_cacao_B97-61/B2_v1   (Cacao)   80
Gossypium_raimondii_v221 147
Citrus_clementina_v165 84
Citrus_sinensis_v154   (Sweet orange)   78
Thellungiella_halophila_v173 38
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   38
Capsella_rubella_v183 39
Arabidopsis_lyrata_   (Lyrate rockcress)   16
Arabidopsis_thaliana_10   (Thale cress)   39
Carica_papaya_   (Papaya)   23
Medicago_truncatula_   (Barrel medic)   65
Phaseolus_vulgaris_v186   (French bean)   54
Glycine_max_v109   (Soybean)   89
Cucumis_sativus_v122   (Cucumber)   43
Fragaria_vesca_   (Wild strawberry)   27
Malus_domestica_v196   (Apple)   59
Prunus_persica_v139   (Peach)   42
Linum_usitatissimum_v200   (Flax)   35
Manihot_esculenta_v147   (Cassava)   47
Populus_trichocarpa_v156   (Black cottonwood)   62
Vitis_vinifera_   (Wine grape)   62
Mimulus_guttatus_v140   (Spotted monkey flower)   34
Solanum_lycopersicum_v.2.3   (Tomato)   30
Solanum_tuberosum_   (Potato)   48
Actinidia_chinensis_Hongyang_ 56
Aquilegia_coerulea_v195 38
Triticum_urartu_22 31
Triticum_aestivum_22   (Bread wheat)   59
Aegilops_tauschii_22 47
Brachypodium_distachyon_   (Stiff brome)   25
Oryza_barthii_22   (African wild rice)   28
Oryza_meridionalis_22 20
Oryza_glumaepatula_22 30
Oryza_glaberrima   (African rice)   31
Oryza_punctata_22 14
Oryza_nivara_22 23
Oryza_brachyantha_22   (Malo sina)   18
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   47
Oryza_sativa_v193   (Rice)   45
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   24
Panicum_virgatum_v202   (Switchgrass)   59
Setaria_italica_v164   (Foxtail millet)   24
Zea_mays_subsp._mays_   (Maize)   32
Zea_mays_v181   (Maize)   31
Sorghum_bicolor_   (Sorghum)   29
Musa_balbisiana   (Balbis banana)   35
Musa_acuminata_22   (Wild Malaysian banana)   29
Amborella_trichopoda_22 19
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 6
Chlorella_variabilis_sp._NC64A_ 32
Chlorella_vulgaris_ 8
Volvox_carteri_f._nagariensis_ 18
Volvox_carteri_v199 23
Chlamydomonas_reinhardtii_4.0 21
Ostreococcus_sp._RCC809_ 7
Ostreococcus_lucimarinus_CCE9901_ 10
Ostreococcus_tauri_ 9
Bathycoccus_prasinos_ 9
Micromonas_sp._RCC299_ 5
Micromonas_pusilla_CCMP1545_v3.0 14
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 7
Thecamonas_trahens_ATCC_50062_ 33
Bigelowiella_natans_CCMP2755_22 50
Giardia_lamblia_2.3 71
Cyanophora_paradoxa_ 26
Leishmania_mexicana_2.4 9
Leishmania_major_strain_Friedlin_ 7
Leishmania_infantum_JPCM5_2.4 6
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 6
Trypanosoma_vivax_ 8
Trypanosoma_cruzi_strain_CL_Brener 7
Trypanosoma_congolense_2.4 12
Trypanosoma_brucei_gambiense_v4.1 9
Trypanosoma_brucei_TREU927_v4.1 10
Ectocarpus_siliculosus 112
Aureococcus_anophagefferens_ 17
Albugo_laibachii_22 16
Pythium_iwayamai_DAOM_BR242034_22 31
Pythium_arrhenomanes_ATCC_12531_22 31
Pythium_ultimum_v1.7-2 29
Pythium_aphanidermatum_DAOM_BR444_22 22
Pythium_irregulare_DAOM_BR486_22 26
Pythium_vexans_DAOM_BR484_22 26
Phytophthora_ramorum_1.1   (Sudden oak death agent)   29
Phytophthora_sojae_1.1 32
Phytophthora_infestans_T30-4_ 32
Phytophthora_capsici_ 18
Hyaloperonospora_arabidopsidis_22 15
Phaeodactylum_tricornutumCCAP_1055/1 13
Fragilariopsis_cylindrus 14
Thalassiosira_pseudonana_CCMP1335 18
Perkinsus_marinus_ATCC_50983_ 18
Paramecium_tetraurelia_ 28
Tetrahymena_thermophila_SB210_1_ 12
Ichthyophthirius_multifiliis_strain_G5_ 8
Cryptosporidium_hominis 5
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 6
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 3
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 3
Plasmodium_knowlesi_strain_H_ 3
Plasmodium_yoelii_ssp._yoelii_1_ 3
Plasmodium_chabaudi_ 3
Plasmodium_berghei_ANKA_ 3
Symbiodinium_minutum_clade_B1_v1.2 106
Naegleria_gruberi_ 9
Trichomonas_vaginalis_ 84
Guillardia_theta_CCMP2712_v1.0_ 36
Emiliania_huxleyi_CCMP1516_ 76
Leptolyngbya_sp._PCC_7376 1
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Rivularia_sp._PCC_7116 0
Anabaena_variabilis_ATCC_29413 0
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 0
Nakamurella_multipartita_DSM_44233 0
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 0
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_avermitilis_MA-4680 1
Streptomyces_scabiei_87.22 1
Saccharomonospora_viridis_DSM_43017 1
Microlunatus_phosphovorus_NM-1 0
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_efficiens_YS-314 1
Corynebacterium_glutamicum_R 1
Sanguibacter_keddieii_DSM_10542 2
Beutenbergia_cavernae_DSM_12333 0
Herpetosiphon_aurantiacus_DSM_785 0
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Oceanithermus_profundus_DSM_14977 2
Veillonella_parvula_DSM_2008 1
Natranaerobius_thermophilus_JW/NM-WN-LF 0
butyrate-producing_bacterium_SM4/1 2
Desulfotomaculum_ruminis_DSM_2154 0
Filifactor_alocis_ATCC_35896 1
Coprococcus_sp._ART55/1 1
Clostridium_acetobutylicum_ATCC_824 1
Acetohalobium_arabaticum_DSM_5501 0
Halanaerobium_hydrogeniformans 1
Halanaerobium_praevalens_DSM_2228 0
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Lysinibacillus_sphaericus_C3-41 2
Gemmatimonas_aurantiaca_T-27 1
Chlorobium_chlorochromatii_CaD3 0
Chlorobium_phaeobacteroides_DSM_266 0
Haliscomenobacter_hydrossis_DSM_1100 0
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Candidatus_Amoebophilus_asiaticus_5a2 1
Candidatus_Cardinium_hertigii 2
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 0
Prevotella_melaninogenica_ATCC_25845 1
Bacteroides_salanitronis_DSM_18170 0
Solitalea_canadensis_DSM_3403 1
Owenweeksia_hongkongensis_DSM_17368 1
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Waddlia_chondrophila_WSU_86-1044 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Parachlamydia_acanthamoebae_UV-7 0
Simkania_negevensis_Z 1
Phycisphaera_mikurensis_NBRC_102666 1
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 1
Coraliomargarita_akajimensis_DSM_45221 0
Akkermansia_muciniphila_ATCC_BAA-835 1
Fretibacterium_fastidiosum 0
Turneriella_parva_DSM_21527 5
Leptospira_interrogans_serovar_Lai_str._IPAV 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Brachyspira_murdochii_DSM_12563 5
Brachyspira_intermedia_PWS/A 5
Brachyspira_pilosicoli_95/1000 3
Brachyspira_hyodysenteriae_WA1 3
Borrelia_recurrentis_A1 0
Borrelia_duttonii_Ly 0
Borrelia_hermsii_DAH 0
Spirochaeta_smaragdinae_DSM_11293 0
Sphaerochaeta_globus_str._Buddy 0
Treponema_azotonutricium_ZAS-9 0
Treponema_brennaborense_DSM_12168 0
Treponema_paraluiscuniculi_Cuniculi_A 0
Treponema_succinifaciens_DSM_2489 1
Treponema_pallidum_subsp._pallidum_SS14 0
Treponema_denticola_ATCC_35405 2
Spirochaeta_africana_DSM_8902 0
Deferribacter_desulfuricans_SSM1 3
Marinitoga_piezophila_KA3 1
Elusimicrobium_minutum_Pei191 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Koribacter_versatilis_Ellin345 0
Terriglobus_roseus_DSM_18391 0
Candidatus_Nitrospira_defluvii 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Candidatus_Methylomirabilis_oxyfera 4
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 0
Arcobacter_butzleri_RM4018 0
Campylobacter_hominis_ATCC_BAA-381 2
Campylobacter_concisus_13826 1
uncultured_Sulfuricurvum_sp._RIFRC-1 1
Helicobacter_hepaticus_ATCC_51449 5
Helicobacter_mustelae_12198 1
Helicobacter_cinaedi_PAGU611 1
Desulfomonile_tiedjei_DSM_6799 3
Syntrophobacter_fumaroxidans_MPOB 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 0
Desulfococcus_oleovorans_Hxd3 1
Desulfomicrobium_baculatum_DSM_4028 2
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 0
Geobacter_sp._M21 0
Geobacter_metallireducens_GS-15 0
Babela_massiliensis 2
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Dechloromonas_aromatica_RCB 1
Thauera_sp._MZ1T 0
Dechlorosoma_suillum_PS 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Burkholderia_rhizoxinica_HKI_454 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_cenocepacia_HI2424 0
Burkholderia_vietnamiensis_G4 13
Verminephrobacter_eiseniae_EF01-2 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Bordetella_petrii_DSM_12804 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 1
Bordetella_bronchiseptica_RB50 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Methylotenera_versatilis_301 1
Methylovorus_glucosetrophus_SIP3-4 1
Caulobacter_sp._K31 1
Sphingomonas_wittichii_RW1 0
Pseudovibrio_sp._FO-BEG1 0
Jannaschia_sp._CCS1 0
Ruegeria_pomeroyi_DSS-3 0
Rhodospirillum_photometricum_DSM_122 2
Micavibrio_aeruginosavorus_ARL-13 0
Candidatus_Midichloria_mitochondrii_IricVA 1
Neorickettsia_sennetsu_str._Miyayama 0
Neorickettsia_risticii_str._Illinois 0
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 19
Wolbachia_sp._wRi 9
Ehrlichia_chaffeensis_str._Arkansas 0
Ehrlichia_canis_str._Jake 0
Ehrlichia_ruminantium_str._Gardel 0
Anaplasma_phagocytophilum_HZ 0
Anaplasma_marginale_str._Florida 0
Anaplasma_centrale_str._Israel 0
Orientia_tsutsugamushi_str._Boryong 14
Rickettsia_bellii_OSU_85-389 9
Rickettsia_prowazekii_str._BuV67-CWPP 1
Rickettsia_heilongjiangensis_054 0
Rickettsia_felis_URRWXCal2 5
Rickettsia_japonica_YH 0
Rickettsia_africae_ESF-5 0
Rickettsia_rhipicephali_str._3-7-female6-CWPP 1
Rickettsia_australis_str._Cutlack 0
Agrobacterium_sp._H13-3 1
Agrobacterium_vitis_S4 1
Hyphomicrobium_denitrificans_ATCC_51888 0
Bradyrhizobium_japonicum_USDA_110 0
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 0
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_oneidensis_MR-1 0
Shewanella_sp._MR-4 0
Shewanella_amazonensis_SB2B 0
Shewanella_frigidimarina_NCIMB_400 0
Pseudoalteromonas_sp._SM9913 0
Hahella_chejuensis_KCTC_2396 1
Alcanivorax_borkumensis_SK2 0
Methylomicrobium_alcaliphilum 0
Rhodanobacter_denitrificans 0
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_spadix_BD-a59 0
Pseudoxanthomonas_suwonensis_11-1 0
Stenotrophomonas_maltophilia_K279a 1
Xylella_fastidiosa_M23 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Halothiobacillus_neapolitanus_c2 0
Thioalkalivibrio_sp._K90mix 1
Halorhodospira_halophila_SL1 0
Allochromatium_vinosum_DSM_180 1
Coxiella_burnetii_Dugway_5J108-111 4
Legionella_longbeachae_NSW150 7
Legionella_pneumophila_str._Corby 2
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Shigella_sonnei_Ss046 0
Shigella_dysenteriae_Sd197 0
Klebsiella_variicola_At-22 0
Klebsiella_pneumoniae_NTUH-K2044 0
Escherichia_fergusonii_ATCC_35469 1
Azotobacter_vinelandii_DJ 0
Pseudomonas_protegens_Pf-5 0
Francisella_cf._novicida_3523 0
Francisella_novicida_U112 0
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 0
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   72
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   29
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   25
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   15
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   19
Cryptococcus_neoformans_var._grubii_H99_ 5
Cryptococcus_neoformans_B-3501A_ 5
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 7
Paracoccidioides_brasiliensis_Pb03_ 5
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 4
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 8
Histoplasma_capsulatum_H143 8
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 6
Aspergillus_fumigatus_A1163_ 8
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 3
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 5
Saccharomyces_cerevisiae_FostersO 6
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 4
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 3
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   91
Hordeum_vulgare_22   (Domesticated barley)   57
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   39
Trypanosoma_brucei_Lister_427_v4.1 9
Neospora_caninum_Nc-Liverpool_6.2 6
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._PCC_7425 0
Cyanothece_sp._ATCC_51142 0
Stanieria_cyanosphaera_PCC_7437 0
Anabaena_cylindrica_PCC_7122 0
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 0
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 2
Mycobacterium_sp._JDM601 2
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_SCgG2 1
Corynebacterium_glutamicum_SCgG1 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Actinomyces_graevenitzii_C83_ 2
Chthonomonas_calidirosea_T49 1
Faecalibacterium_prausnitzii_L2-6 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Thermacetogenium_phaeum_DSM_12270 0
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Bacillus_megaterium_QM_B1551 1
Psychroflexus_torquis_ATCC_700755 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Singulisphaera_acidiphila_DSM_18658 2
Leptospira_interrogans_serovar_Lai_str._56601 3
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Brachyspira_pilosicoli_WesB 3
Brachyspira_pilosicoli_B2904 3
Brachyspira_pilosicoli_P43/6/78 3
Treponema_pedis_str._T_A4 1
Treponema_pallidum_str._Fribourg-Blanc 0
Treponema_pallidum_subsp._pertenue_str._Gauthier 0
Treponema_pallidum_subsp._pertenue_str._CDC2 0
Treponema_pallidum_subsp._pertenue_str._SamoaD 0
Treponema_pallidum_subsp._pallidum_str._Mexico_A 0
Treponema_pallidum_subsp._pallidum_str._Chicago 0
Treponema_pallidum_subsp._pallidum_DAL-1 0
Treponema_pallidum_subsp._pallidum_str._Nichols 0
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 0
Fusobacterium_nucleatum_subsp._animalis_4_8 0
Bdellovibrio_bacteriovorus_str._Tiberius 1
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfovibrio_desulfuricans_ND132 0
Myxococcus_stipitatus_DSM_14675 3
Pandoraea_pnomenusa_3kgm 0
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 1
Burkholderia_lata 1
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Burkholderia_cenocepacia_J2315 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Variovorax_paradoxus_EPS 0
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Octadecabacter_arcticus_238 0
Micavibrio_aeruginosavorus_EPB 0
Wolbachia_endosymbiont_of_Drosophila_melanogaster 7
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 0
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 4
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 12
Ehrlichia_muris_AS145 0
Ehrlichia_ruminantium_str._Welgevonden 0
Ehrlichia_ruminantium_str._Welgevonden 0
Anaplasma_phagocytophilum_str._Dog2 0
Anaplasma_phagocytophilum_str._HZ2 0
Anaplasma_phagocytophilum_str._JM 0
Anaplasma_marginale_str._St._Maries 0
Orientia_tsutsugamushi_str._Ikeda 22
Rickettsia_bellii_RML369-C 7
Rickettsia_prowazekii_str._Breinl 1
Rickettsia_prowazekii_str._Dachau 1
Rickettsia_prowazekii_str._Katsinyian 1
Rickettsia_prowazekii_str._Chernikova 1
Rickettsia_prowazekii_Rp22 1
Rickettsia_prowazekii_str._Madrid_E 1
Sinorhizobium_meliloti_Rm41 0
Rhodopseudomonas_palustris_TIE-1 0
Bradyrhizobium_japonicum_USDA_6 0
Vibrio_fischeri_ES114 0
Vibrio_sp._EJY3 0
Vibrio_nigripulchritudo_VibrioScope 1
Shewanella_baltica_OS117 0
Shewanella_baltica_OS155 0
Alteromonas_macleodii_ATCC_27126 0
Thalassolituus_oleivorans_MIL-1 0
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_M12 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Thioalkalivibrio_nitratireducens_DSM_14787 1
Thioflavicoccus_mobilis_8321 1
Coxiella_burnetii_CbuK_Q154 3
Coxiella_burnetii_CbuG_Q212 3
Coxiella_burnetii_RSA_331 4
Coxiella_burnetii_RSA_493 4
Legionella_pneumophila_str._Paris 3
Legionella_pneumophila_str._Lens 3
Legionella_pneumophila_subsp._pneumophila_LPE509 3
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 3
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 3
Legionella_pneumophila_subsp._pneumophila 3
Legionella_pneumophila_subsp._pneumophila 3
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 3
Legionella_pneumophila_2300/99_Alcoy 2
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 0
Shigella_sonnei_53G 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._301 0
Shigella_dysenteriae_1617 0
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Klebsiella_pneumoniae_JM45 0
Klebsiella_pneumoniae_CG43 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_342 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1
Escherichia_coli_E24377A 3
Escherichia_coli_APEC_O78 1
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_UMN026 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 0
Escherichia_coli_O157:H7_str._EDL933 0
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Azotobacter_vinelandii_CA6 0
Azotobacter_vinelandii_CA 0
Pseudomonas_protegens_CHA0 1
Methanosarcina_mazei_Tuc01 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   69
Pan_troglodytes_69_2.1.4   (Chimpanzee)   49
Gorilla_gorilla_69_3.1   (Western gorilla)   45
Pongo_abelii_69_2   (Sumatran orangutan)   41
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   37
Macaca_mulatta_69_1   (Rhesus monkey)   40
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   48
Otolemur_garnettii_69_3   (Small-eared galago)   44
Microcebus_murinus_69_1   (Gray mouse lemur)   36
Rattus_norvegicus_69_3.4   (Norway rat)   41
Mus_musculus_69_38   (House mouse)   46
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   36
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   41
Cavia_porcellus_69_3   (Domestic guinea pig)   45
Oryctolagus_cuniculus_69_2   (Rabbit)   33
Ochotona_princeps_69   (American pika)   34
Tupaia_belangeri_69   (Northern tree shrew)   34
Sus_scrofa_69_10.2   (Pig)   47
Bos_taurus_69_3.1   (Cattle)   47
Vicugna_pacos_69_1   (Alpaca)   26
Tursiops_truncatus_69_1   (Bottlenose dolphin)   35
Mustela_putorius_furo_69_1.0   (Domestic ferret)   43
Ailuropoda_melanoleuca_69_1   (Giant panda)   38
Canis_familiaris_69_3.1   (Dog)   46
Felis_catus_69   (Domestic cat)   35
Equus_caballus_69_2   (Horse)   46
Myotis_lucifugus_69_2.0   (Little brown bat)   38
Pteropus_vampyrus_69_1   (Large flying fox)   34
Sorex_araneus_69_1   (European shrew)   31
Erinaceus_europaeus_69   (Western European hedgehog)   30
Procavia_capensis_69_1   (Cape rock hyrax)   40
Loxodonta_africana_69_3   (African savanna elephant)   42
Echinops_telfairi_69   (Small Madagascar hedgehog)   28
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   31
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   31
Macropus_eugenii_69_1.0   (Tammar wallaby)   38
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   42
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   35
Ornithorhynchus_anatinus_69_5   (Platypus)   36
Petromyzon_marinus_69_7.0   (Sea lamprey)   22
Meleagris_gallopavo_69_2   (Turkey)   31
Gallus_gallus_69_2   (Chicken)   34
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   40
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   38
Anolis_carolinensis_69_2.0   (Green anole)   37
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   49
Latimeria_chalumnae_69_1   (Coelacanth)   49
Gadus_morhua_69_1   (Atlantic cod)   48
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   46
Takifugu_rubripes_69_4   (Torafugu)   39
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   38
Oryzias_latipes_69_1   (Japanese medaka)   40
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   43
Oreochromis_niloticus_69_1.0   (Nile tilapia)   40
Danio_rerio_69_9   (Zebrafish)   53
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   16
Ciona_intestinalis_69   (Vase tunicate)   20
Drosophila_melanogaster_69_5   (Fruit fly)   11
Caenorhabditis_elegans_69_215   (Roundworm)   12
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   30

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   219
Homo_sapiens__(NCBI_version)   (Human)   97
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   46
Heliconius_numata__(Incomplete) 3
Loa_loa_v3.3_(Request)   (Eye worm)   19
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   12
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 24
Malus_x_domestica_(Duplicate)   (Apple)   59
Ricinus_communis__(Early_assembly)   (Castor bean)   32
Nicotiana_benthamiana_0.4.4_(Early_draft) 61
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   31
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   30
Phoenix_dactylifera__(Early_draft)   (Date palm)   17
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1
NCBI_plasmid_sequences_(Plasmids) 10
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8
PDB_chains_(SCOP_1.75)_(PDB) 0
TargetDB__(Targets) 93
NCBI_viral_sequences_(Viral) 191
Protein_Data_Bank_(all_PDB_sequenc) 91
Protozoadb_2010_08_(Protozoadb) 417
STRING_v9.0.5_(STRING) 2585
Uniprot_2018_03_genome 97806
NCBI_2017_08_genome 41815
UniProt__viral_sequences_(Viral) 141

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.