SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48403,_gap_,50156,_gap_,47769 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48403 - Ankyrin repeat
50156 - PDZ domain-like
47769 - SAM/Pointed domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Mnemiopsis_leidyi   (Sea walnut)   1

Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 2
Uniprot_2018_03_genome 70

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