SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 48452,_gap_,50729,_gap_,50729,90209,_gap_,50729,_gap_,50729 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48452 - TPR-like
50729 - PH domain-like
50729 - PH domain-like
90209 - Ran binding protein zinc finger-like
50729 - PH domain-like
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_virilis_1.2 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1

Longest transcript per gene
Genome     Number
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 1176
NCBI_2017_08_genome 18

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]