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Domain combinations for 48452,_gap_,90229,57667,90229,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48452 - TPR-like
90229 - CCCH zinc finger
57667 - beta-beta-alpha zinc fingers
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 1330
NCBI_2017_08_genome 164
TargetDB__(Targets) 1

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