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  Home > SCOP hierarchy > Domain combination - 48464,_gap_

Domain combinations for 48464,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48464 - ENTH/VHS domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   33
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   11
Pongo_abelii_76_2   (Sumatran orangutan)   12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   11
Papio_anubis_76   (Olive baboon)   10
Macaca_mulatta_76_1   (Rhesus monkey)   19
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   25
Otolemur_garnettii_76_3   (Small-eared galago)   8
Microcebus_murinus_76_1   (Gray mouse lemur)   9
Rattus_norvegicus_76_5.0   (Norway rat)   12
Mus_musculus_76_38   (House mouse)   27
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8
Cavia_porcellus_76_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_76_2   (Rabbit)   8
Ochotona_princeps_76   (American pika)   6
Tupaia_belangeri_76   (Northern tree shrew)   8
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   12
Ovis_aries_76_3.1   (Sheep)   12
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   9
Ailuropoda_melanoleuca_76_1   (Giant panda)   8
Canis_familiaris_76_3.1   (Dog)   11
Felis_catus_76_6.2   (Domestic cat)   10
Equus_caballus_76_2   (Horse)   11
Myotis_lucifugus_76_2.0   (Little brown bat)   9
Pteropus_vampyrus_76_1   (Large flying fox)   9
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   8
Loxodonta_africana_76_3   (African savanna elephant)   11
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   8
Macropus_eugenii_76_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11
Ornithorhynchus_anatinus_76_5   (Platypus)   12
Saccoglossus_kowalevskii_v3.0 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   9
Gallus_gallus_76_4   (Chicken)   6
Anas_platyrhynchos_76_1.0   (Mallard)   6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   11
Xenopus_laevis_   (African clawed frog)   17
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   16
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   11
Gadus_morhua_76_1   (Atlantic cod)   13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   18
Takifugu_rubripes_76_4   (Torafugu)   29
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   17
Oryzias_latipes_76_1   (Japanese medaka)   14
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   13
Poecilia_formosa_76   (Amazon molly)   13
Oreochromis_niloticus_76_1.0   (Nile tilapia)   18
Astyanax_mexicanus_76   (Mexican tetra)   13
Danio_rerio_76_9   (Zebrafish)   23
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Adineta_vaga 19
Octopus_bimaculoides_280 12
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   4
Helobdella_robusta_ 9
Capitella_sp._I_ 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6
Lucilia_cuprina   (Australian sheep blowfly)   7
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 5
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 5
Drosophila_suzukii 4
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 6
Drosophila_melanogaster_76_5   (Fruit fly)   21
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   7
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 6
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 1
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 7
Meloidogyne_incognita_   (Southern root-knot nematode)   8
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 6
Caenorhabditis_brenneri_ 7
Caenorhabditis_remanei_ 6
Caenorhabditis_elegans_76_235   (Roundworm)   8
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 6
Taenia_solium_   (Pork tapeworm)   5
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   5
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 4
Amphimedon_queenslandica 7
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 8
Monosiga_brevicollis_ 5
Sphaeroforma_arctica_JP610_ 8
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 3
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 5
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 7
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 8
Sporisorium_reilianum_22 2
Ustilago_maydis_ 3
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 4
Piloderma_croceum_F_1598_v1.0 3
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 4
Hydnomerulius_pinastri_v2.0 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 4
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 4
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 4
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 5
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 4
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 4
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 4
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   4
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 4
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 3
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 4
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 4
Fusarium_graminearum_ 4
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 4
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4
Trichoderma_harzianum_CBS_226.95_v1.0 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   4
Botrytis_cinerea_B05.10_ 6
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 4
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 4
Pyrenophora_teres_f._teres_22 4
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 4
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 4
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 4
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 5
Candida_tropicalis_MYA-3404_ 5
Candida_parapsilosis_ 5
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4
Pichia_stipitis_CBS_6054_ 6
Candida_guilliermondii_ATCC_6260_ 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 6
Debaromyces_hansenii 5
Wickerhamomyces_anomalus 5
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 4
Candida_lusitaniae_ATCC_42720_ 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5
Vanderwaltozyma_polyspora_DSM_70294_ 8
Candida_glabrata_CBS138 6
Kluyveromyces_thermotolerans_CBS_6340 7
Lachancea_kluyveri_ 6
Kluyveromyces_waltii 6
Ashbya_gossypii_ATCC_10895_ 6
Zygosaccharomyces_rouxii_ 6
Saccharomyces_mikatae_MIT 5
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   7
Saccharomyces_bayanus_MIT 8
Kluyveromyces_lactis 7
Schizosaccharomyces_cryophilus_OY26_22 4
Schizosaccharomyces_octosporus_yFS286_ 5
Schizosaccharomyces_japonicus_yFS275_ 4
Schizosaccharomyces_pombe   (Fission yeast)   4
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 5
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 4
Entamoeba_dispar_1.2 17
Entamoeba_invadens_1.2 26
Entamoeba_histolytica_1 19
Selaginella_moellendorffii_ 8
Pinus_taeda   (Loblolly pine)   12
Picea_abies   (Norway spruce)   6
Eucalyptus_grandis_v201   (Rose gum)   13
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12
Gossypium_raimondii_v221 67
Citrus_clementina_v165 17
Citrus_sinensis_v154   (Sweet orange)   27
Thellungiella_halophila_v173 13
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   16
Capsella_rubella_v183 14
Arabidopsis_lyrata_   (Lyrate rockcress)   14
Arabidopsis_thaliana_10   (Thale cress)   18
Carica_papaya_   (Papaya)   12
Medicago_truncatula_   (Barrel medic)   16
Phaseolus_vulgaris_v186   (French bean)   16
Glycine_max_v109   (Soybean)   33
Cucumis_sativus_v122   (Cucumber)   15
Fragaria_vesca_   (Wild strawberry)   8
Malus_domestica_v196   (Apple)   18
Prunus_persica_v139   (Peach)   14
Linum_usitatissimum_v200   (Flax)   20
Manihot_esculenta_v147   (Cassava)   19
Populus_trichocarpa_v156   (Black cottonwood)   17
Vitis_vinifera_   (Wine grape)   10
Mimulus_guttatus_v140   (Spotted monkey flower)   12
Solanum_lycopersicum_v.2.3   (Tomato)   12
Solanum_tuberosum_   (Potato)   11
Actinidia_chinensis_Hongyang_ 16
Aquilegia_coerulea_v195 17
Triticum_urartu_22 9
Triticum_aestivum_22   (Bread wheat)   31
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   11
Oryza_barthii_22   (African wild rice)   18
Oryza_meridionalis_22 15
Oryza_glumaepatula_22 12
Oryza_glaberrima   (African rice)   10
Oryza_punctata_22 17
Oryza_nivara_22 15
Oryza_brachyantha_22   (Malo sina)   8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   18
Oryza_sativa_v193   (Rice)   18
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13
Panicum_virgatum_v202   (Switchgrass)   22
Setaria_italica_v164   (Foxtail millet)   9
Zea_mays_subsp._mays_   (Maize)   18
Zea_mays_v181   (Maize)   19
Sorghum_bicolor_   (Sorghum)   10
Musa_balbisiana   (Balbis banana)   8
Musa_acuminata_22   (Wild Malaysian banana)   18
Amborella_trichopoda_22 9
Physcomitrella_patens 5
Coccomyxa_subellipsoidea_sp._C-169_v2 4
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 3
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 5
Bigelowiella_natans_CCMP2755_22 5
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 3
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 6
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 3
Ectocarpus_siliculosus 6
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 4
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 3
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 4
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 4
Phytophthora_capsici_ 6
Hyaloperonospora_arabidopsidis_22 3
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 6
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 2
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 2
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 7
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 4

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   18
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   8
Cryptococcus_neoformans_var._grubii_H99_ 4
Cryptococcus_neoformans_B-3501A_ 4
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 5
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 4
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 4
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 7
Saccharomyces_cerevisiae_PW5 7
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB324 3
Saccharomyces_cerevisiae_CBS7960 5
Saccharomyces_cerevisiae_YJM269 5
Saccharomyces_cerevisiae_T7 7
Saccharomyces_cerevisiae_FostersB 5
Saccharomyces_cerevisiae_FostersO 7
Saccharomyces_cerevisiae_VL3 5
Saccharomyces_cerevisiae_Vin13 6
Saccharomyces_cerevisiae_LalvinQA23 5
Saccharomyces_cerevisiae_AWRI796 8
Saccharomyces_cerevisiae_Sigma1278b 7
Saccharomyces_cerevisiae_W303 7
Saccharomyces_cerevisiae_JAY291 7
Saccharomyces_cerevisiae_AWRI1631 5
Saccharomyces_cerevisiae_YPS163 4
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 4
Saccharomyces_cerevisiae_CLIB215 5
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 7
Saccharomyces_cerevisiae_YJM789 7
Saccharomyces_cerevisiae_RM11-1a 7
Saccharomyces_cerevisiae_RM11-1a_ 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7
Schizosaccharomyces_pombe_972h-_ 4
Batrachochytrium_dendrobatidis_JEL423_ 5
Batrachochytrium_dendrobatidis_JAM81_ 5
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11
Hordeum_vulgare_22   (Domesticated barley)   18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   12
Trypanosoma_brucei_Lister_427_v4.1 3
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   6
Pongo_abelii_69_2   (Sumatran orangutan)   10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8
Macaca_mulatta_69_1   (Rhesus monkey)   9
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_69_3   (Small-eared galago)   8
Microcebus_murinus_69_1   (Gray mouse lemur)   9
Rattus_norvegicus_69_3.4   (Norway rat)   11
Mus_musculus_69_38   (House mouse)   11
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7
Cavia_porcellus_69_3   (Domestic guinea pig)   9
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   6
Tupaia_belangeri_69   (Northern tree shrew)   8
Sus_scrofa_69_10.2   (Pig)   8
Bos_taurus_69_3.1   (Cattle)   9
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9
Ailuropoda_melanoleuca_69_1   (Giant panda)   8
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   9
Myotis_lucifugus_69_2.0   (Little brown bat)   9
Pteropus_vampyrus_69_1   (Large flying fox)   9
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   8
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   8
Macropus_eugenii_69_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   10
Ornithorhynchus_anatinus_69_5   (Platypus)   12
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   9
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   10
Latimeria_chalumnae_69_1   (Coelacanth)   8
Gadus_morhua_69_1   (Atlantic cod)   13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   14
Takifugu_rubripes_69_4   (Torafugu)   11
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13
Oryzias_latipes_69_1   (Japanese medaka)   11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   13
Danio_rerio_69_9   (Zebrafish)   13
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   4
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   6
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7
Arabidopsis_thaliana_10   (Thale cress)   13

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   38
Homo_sapiens__(NCBI_version)   (Human)   14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   11
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 12
Malus_x_domestica_(Duplicate)   (Apple)   18
Ricinus_communis__(Early_assembly)   (Castor bean)   12
Nicotiana_benthamiana_0.4.4_(Early_draft) 22
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   12
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12
Phoenix_dactylifera__(Early_draft)   (Date palm)   12
Protozoadb_2010_08_(Protozoadb) 146
STRING_v9.0.5_(STRING) 720
Uniprot_2018_03_genome 27096
Protein_Data_Bank_(all_PDB_sequenc) 6
NCBI_2017_08_genome 9697
TargetDB__(Targets) 17

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.