SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48674 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48674 - Fe-only hydrogenase smaller subunit

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_remanei_ 0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Monosiga_brevicollis_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 0
Wallemia_sebi_v1.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Laccaria_bicolor_S238N-H82_ 0
Tulasnella_calospora_AL13/4D_v1.0 0
Dichomitus_squalens 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Candida_dubliniensis_CD36_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Candida_glabrata_CBS138 0
Ashbya_gossypii_ATCC_10895_ 0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 0
Catenaria_anguillulae_PL171_v1.0 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_tuberosum_   (Potato)   1
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   1
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Chlorella_variabilis_sp._NC64A_ 1
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_sojae_1.1 0
Paramecium_tetraurelia_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Propionibacterium_propionicum_F0230a 0
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Desulfotomaculum_acetoxidans_DSM_771 0
Clostridium_lentocellum_DSM_5427 0
[Ruminococcus]_torques 0
Syntrophothermus_lipocalidus_DSM_12680 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Clostridium_beijerinckii_NCIMB_8052 0
Thermodesulfobium_narugense_DSM_14796 0
Lactobacillus_sakei_subsp._sakei_23K 0
Lactobacillus_buchneri_NRRL_B-30929 0
Bacillus_sp._1NLA3E 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_weihenstephanensis_KBAB4 0
Chitinophaga_pinensis_DSM_2588 0
Fibrella_aestuarina 0
Tannerella_forsythia_ATCC_43037 0
Bacteroides_sp._CF50 0
Bacteroides_fragilis_YCH46 0
Sphingobacterium_sp._21 0
Cellulophaga_lytica_DSM_7489 0
Capnocytophaga_ochracea_DSM_7271 0
Treponema_azotonutricium_ZAS-9 0
Thermodesulfatator_indicus_DSM_15286 0
Fervidobacterium_pennivorans_DSM_9078 0
Desulfurobacterium_thermolithotrophum_DSM_11699 0
Thermodesulfovibrio_yellowstonii_DSM_11347 0
Leptotrichia_buccalis_C-1013-b 0
Nautilia_profundicola_AmH 0
Campylobacter_hominis_ATCC_BAA-381 0
Helicobacter_cinaedi_PAGU611 0
Desulfomonile_tiedjei_DSM_6799 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfovibrio_aespoeensis_Aspo-2 2
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_alaskensis_G20 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Burkholderia_gladioli_BSR3 0
Bordetella_avium_197N 0
Bordetella_pertussis_Tohama_I 0
Bordetella_parapertussis_12822 0
Bordetella_bronchiseptica_RB50 0
Vibrio_furnissii_NCTC_11218 0
Ferrimonas_balearica_DSM_9799 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_oneidensis_MR-1 1
Shewanella_sp._MR-4 1
Edwardsiella_ictaluri_93-146 0
Klebsiella_pneumoniae_NTUH-K2044 0
Acinetobacter_calcoaceticus_PHEA-2 0
Methanosarcina_acetivorans_C2A 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Batrachochytrium_dendrobatidis_JEL423_ 0
Prochlorococcus_marinus_str._MIT_9312 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Nocardia_brasiliensis_ATCC_700358 0
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 0
Clostridium_saccharobutylicum_DSM_13864 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_suis_T15 0
Thermobacillus_composti_KWC4 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Echinicola_vietnamensis_DSM_17526 0
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Treponema_pedis_str._T_A4 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Bordetella_pertussis_CS 0
Bordetella_parapertussis_18323 0
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Octadecabacter_antarcticus_307 0
Micavibrio_aeruginosavorus_EPB 0
Shewanella_sp._ANA-3 1
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_CG43 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Escherichia_coli_str._'clone_D_i2' 0
Escherichia_coli_str._'clone_D_i14' 0
Escherichia_coli_ABU_83972 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_CFT073 0
Natronobacterium_gregoryi_SP2 0

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Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Others
Genome     Number
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
NCBI_plasmid_sequences_(Plasmids) 0
Protein_Data_Bank_(all_PDB_sequenc) 4
STRING_v9.0.5_(STRING) 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 28
Uniprot_2018_03_genome 116
NCBI_2017_08_genome 124
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0
PDB_chains_(SCOP_1.75)_(PDB) 2
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0

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