SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 48726,_gap_,49265,_gap_,56112,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48726 - Immunoglobulin
49265 - Fibronectin type III
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Sorex_araneus_76_1   (European shrew)   1
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Astyanax_mexicanus_76   (Mexican tetra)   0

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Sorex_araneus_69_1   (European shrew)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Anolis_carolinensis_69_2.0   (Green anole)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 38
NCBI_2017_08_genome 7

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]