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  Home > SCOP hierarchy > Domain combination - 48726,_gap_,56436

Domain combinations for 48726,_gap_,56436 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48726 - Immunoglobulin
56436 - C-type lectin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Ochotona_princeps_76   (American pika)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Anolis_carolinensis_76_2.0   (Green anole)   0

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Ochotona_princeps_69   (American pika)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Felis_catus_69   (Domestic cat)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Anolis_carolinensis_69_2.0   (Green anole)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
NCBI_2017_08_genome 1
Uniprot_2018_03_genome 36

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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