SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 49313,49313,49313,49313,49313,49313,49313,49313,49313,_gap_,57196,49899,49899,57196,57196,_gap_,57196,111418,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
111418 - Hormone receptor domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Papio_anubis_76   (Olive baboon)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Canis_familiaris_76_3.1   (Dog)   0
Equus_caballus_76_2   (Horse)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 147
NCBI_2017_08_genome 0

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