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  Home > SCOP hierarchy > Domain combination - 49313,49313,49313,49313,49313,49313,49313,_gap_,49899,49899,57196,57196,_gap_

Domain combinations for 49313,49313,49313,49313,49313,49313,49313,_gap_,49899,49899,57196,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Saccoglossus_kowalevskii_v3.0 0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 0
Drosophila_yakuba_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1

Longest transcript per gene
Genome     Number
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 2211
NCBI_2017_08_genome 61

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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