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  Home > SCOP hierarchy > Domain combination - 49313,49313,49313,49313,49313,49313,_gap_

Domain combinations for 49313,49313,49313,49313,49313,49313,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   114
Pan_troglodytes_76_2.1.4   (Chimpanzee)   46
Gorilla_gorilla_76_3.1   (Western gorilla)   45
Pongo_abelii_76_2   (Sumatran orangutan)   22
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   28
Papio_anubis_76   (Olive baboon)   26
Macaca_mulatta_76_1   (Rhesus monkey)   43
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   39
Otolemur_garnettii_76_3   (Small-eared galago)   25
Microcebus_murinus_76_1   (Gray mouse lemur)   10
Rattus_norvegicus_76_5.0   (Norway rat)   45
Mus_musculus_76_38   (House mouse)   48
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   33
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   19
Cavia_porcellus_76_3   (Domestic guinea pig)   23
Oryctolagus_cuniculus_76_2   (Rabbit)   22
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   34
Bos_taurus_76_3.1   (Cattle)   35
Ovis_aries_76_3.1   (Sheep)   30
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_76_1   (Giant panda)   30
Canis_familiaris_76_3.1   (Dog)   18
Felis_catus_76_6.2   (Domestic cat)   26
Equus_caballus_76_2   (Horse)   38
Myotis_lucifugus_76_2.0   (Little brown bat)   33
Pteropus_vampyrus_76_1   (Large flying fox)   16
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   5
Procavia_capensis_76_1   (Cape rock hyrax)   13
Loxodonta_africana_76_3   (African savanna elephant)   29
Echinops_telfairi_76   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   28
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_76_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   20
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   22
Ornithorhynchus_anatinus_76_5   (Platypus)   19
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   12
Gallus_gallus_76_4   (Chicken)   12
Anas_platyrhynchos_76_1.0   (Mallard)   9
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   26
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16
Anolis_carolinensis_76_2.0   (Green anole)   70
Xenopus_laevis_   (African clawed frog)   13
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   28
Latimeria_chalumnae_76_1   (Coelacanth)   10
Lepisosteus_oculatus_76   (Spotted gar)   18
Gadus_morhua_76_1   (Atlantic cod)   13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   39
Takifugu_rubripes_76_4   (Torafugu)   142
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   34
Oryzias_latipes_76_1   (Japanese medaka)   24
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15
Poecilia_formosa_76   (Amazon molly)   19
Oreochromis_niloticus_76_1.0   (Nile tilapia)   31
Astyanax_mexicanus_76   (Mexican tetra)   36
Danio_rerio_76_9   (Zebrafish)   118
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 1
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 3
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 1
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 0
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_infestans_T30-4_ 0
Synechocystis_sp._PCC_6803 0
Rivularia_sp._PCC_7116 0
Nostoc_sp._PCC_7524 0
Streptococcus_macedonicus_ACA-DC_198 0
Macrococcus_caseolyticus_JCSC5402 0
Staphylococcus_lugdunensis_HKU09-01 0
Staphylococcus_epidermidis_RP62A 0
Chloroherpeton_thalassium_ATCC_35110 0
Haliscomenobacter_hydrossis_DSM_1100 0
Marivirga_tractuosa_DSM_4126 0
Paludibacter_propionicigenes_WB4 0
Gramella_forsetii_KT0803 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Arcobacter_nitrofigilis_DSM_7299 0
Desulfatibacillum_alkenivorans_AK-01 0
Geobacter_sulfurreducens_KN400 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Leptothrix_cholodnii_SP-6 0
Ralstonia_solanacearum_CFBP2957 0
Variovorax_paradoxus_S110 0
Collimonas_fungivorans_Ter331 0
Magnetococcus_marinus_MC-1 0
Magnetospirillum_magneticum_AMB-1 0
Methylobacterium_extorquens_AM1 0
Saccharophagus_degradans_2-40 0
Cellvibrio_japonicus_Ueda107 0
Aliivibrio_salmonicida_LFI1238 0
Vibrio_fischeri_MJ11 0
Vibrio_furnissii_NCTC_11218 0
Shewanella_baltica_OS185 0
Shewanella_frigidimarina_NCIMB_400 0
Colwellia_psychrerythraea_34H 0
Marinomonas_sp._MWYL1 0
Rhodanobacter_denitrificans 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Methanocella_arvoryzae_MRE50 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   31
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Dactylococcopsis_salina_PCC_8305 0
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._PCC_7822 0
Anabaena_cylindrica_PCC_7122 0
Bacillus_megaterium_WSH-002 0
Staphylococcus_lugdunensis_N920143 0
Geobacter_sulfurreducens_PCA 0
Ralstonia_pickettii_12J 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Variovorax_paradoxus_B4 0
Bradyrhizobium_oligotrophicum_S58 0
Vibrio_fischeri_ES114 0
Vibrio_cholerae_M66-2 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS195 0
Shewanella_putrefaciens_200 0
Stenotrophomonas_maltophilia_JV3 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Methanolobus_psychrophilus_R15 0
Natronomonas_moolapensis_8.8.11 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   55
Pan_troglodytes_69_2.1.4   (Chimpanzee)   31
Gorilla_gorilla_69_3.1   (Western gorilla)   18
Pongo_abelii_69_2   (Sumatran orangutan)   21
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   23
Macaca_mulatta_69_1   (Rhesus monkey)   20
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   12
Otolemur_garnettii_69_3   (Small-eared galago)   25
Microcebus_murinus_69_1   (Gray mouse lemur)   10
Rattus_norvegicus_69_3.4   (Norway rat)   36
Mus_musculus_69_38   (House mouse)   27
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   32
Cavia_porcellus_69_3   (Domestic guinea pig)   21
Oryctolagus_cuniculus_69_2   (Rabbit)   22
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   33
Bos_taurus_69_3.1   (Cattle)   30
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_69_1   (Giant panda)   25
Canis_familiaris_69_3.1   (Dog)   14
Felis_catus_69   (Domestic cat)   9
Equus_caballus_69_2   (Horse)   23
Myotis_lucifugus_69_2.0   (Little brown bat)   32
Pteropus_vampyrus_69_1   (Large flying fox)   16
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   5
Procavia_capensis_69_1   (Cape rock hyrax)   13
Loxodonta_africana_69_3   (African savanna elephant)   17
Echinops_telfairi_69   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_69_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   18
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   22
Ornithorhynchus_anatinus_69_5   (Platypus)   19
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   9
Gallus_gallus_69_2   (Chicken)   13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   15
Anolis_carolinensis_69_2.0   (Green anole)   72
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   24
Latimeria_chalumnae_69_1   (Coelacanth)   9
Gadus_morhua_69_1   (Atlantic cod)   13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   15
Takifugu_rubripes_69_4   (Torafugu)   31
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   25
Oryzias_latipes_69_1   (Japanese medaka)   16
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   20
Danio_rerio_69_9   (Zebrafish)   103
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   117
Homo_sapiens__(NCBI_version)   (Human)   102
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   25
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
NCBI_plasmid_sequences_(Plasmids) 0
PDB_chains_(SCOP_1.75)_(PDB) 0
STRING_v9.0.5_(STRING) 593
Uniprot_2018_03_genome 56836
NCBI_2017_08_genome 9251
TargetDB__(Targets) 0
Protein_Data_Bank_(all_PDB_sequenc) 13

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.