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  Home > SCOP hierarchy > Domain combination - 49313,49313,49313,_gap_,49313,49313,_gap_

Domain combinations for 49313,49313,49313,_gap_,49313,49313,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   3
Procavia_capensis_76_1   (Cape rock hyrax)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   1
Takifugu_rubripes_76_4   (Torafugu)   3
Poecilia_formosa_76   (Amazon molly)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 1
Linepithema_humile_v1.1   (Argentine ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_persimilis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 0
Onchocerca_volvulus_22 0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Desulfomonile_tiedjei_DSM_6799 0
Tistrella_mobilis_KA081020-065 0
Methylobacterium_extorquens_AM1 0
Saccharophagus_degradans_2-40 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Bacillus_megaterium_WSH-002 0

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   3
Procavia_capensis_69_1   (Cape rock hyrax)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Danio_rerio_69_9   (Zebrafish)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
NCBI_plasmid_sequences_(Plasmids) 0
NCBI_2017_08_genome 113
Uniprot_2018_03_genome 1159
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 3

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.