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  Home > SCOP hierarchy > Domain combination - 49562,_gap_

Domain combinations for 49562,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   37
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4
Papio_anubis_76   (Olive baboon)   4
Macaca_mulatta_76_1   (Rhesus monkey)   14
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   16
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   6
Mus_musculus_76_38   (House mouse)   17
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   3
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   9
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   8
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   7
Pteropus_vampyrus_76_1   (Large flying fox)   6
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   6
Loxodonta_africana_76_3   (African savanna elephant)   5
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   10
Saccoglossus_kowalevskii_v3.0 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   5
Meleagris_gallopavo_76_2   (Turkey)   6
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   5
Anolis_carolinensis_76_2.0   (Green anole)   6
Xenopus_laevis_   (African clawed frog)   6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9
Latimeria_chalumnae_76_1   (Coelacanth)   7
Lepisosteus_oculatus_76   (Spotted gar)   9
Gadus_morhua_76_1   (Atlantic cod)   8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   21
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   11
Adineta_vaga 13
Octopus_bimaculoides_280 7
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 8
Capitella_sp._I_ 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 4
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 3
Drosophila_persimilis_1.3 2
Drosophila_suzukii 3
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 5
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   7
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 4
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 1
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 6
Amphimedon_queenslandica 6
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 7
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 9
Phycomyces_blakesleeanus_ 3
Rhizopus_oryzae_RA_99-880_ 4
Mucor_circinelloides_ 4
Rhizomucor_miehei_CAU432_ 4
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 11
Piloderma_croceum_F_1598_v1.0 10
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 3
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5
Galerina_marginata_v1.0 5
Hebeloma_cylindrosporum_h7_v2.0 3
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 3
Sebacina_vermifera_MAFF_305830_v1.0 4
Fomitiporia_mediterranea_v1.0 8
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 4
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 2
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 2
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 10
Allomyces_macrogynus_ATCC_38327_ 19
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 5
Entamoeba_dispar_1.2 14
Entamoeba_invadens_1.2 22
Entamoeba_histolytica_1 15
Selaginella_moellendorffii_ 17
Pinus_taeda   (Loblolly pine)   24
Picea_abies   (Norway spruce)   29
Eucalyptus_grandis_v201   (Rose gum)   45
Theobroma_cacao_B97-61/B2_v1   (Cacao)   20
Gossypium_raimondii_v221 45
Citrus_clementina_v165 21
Citrus_sinensis_v154   (Sweet orange)   26
Thellungiella_halophila_v173 27
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   40
Capsella_rubella_v183 29
Arabidopsis_lyrata_   (Lyrate rockcress)   22
Arabidopsis_thaliana_10   (Thale cress)   30
Carica_papaya_   (Papaya)   15
Medicago_truncatula_   (Barrel medic)   44
Phaseolus_vulgaris_v186   (French bean)   28
Glycine_max_v109   (Soybean)   42
Cucumis_sativus_v122   (Cucumber)   24
Fragaria_vesca_   (Wild strawberry)   21
Malus_domestica_v196   (Apple)   43
Prunus_persica_v139   (Peach)   20
Linum_usitatissimum_v200   (Flax)   34
Manihot_esculenta_v147   (Cassava)   29
Populus_trichocarpa_v156   (Black cottonwood)   26
Vitis_vinifera_   (Wine grape)   10
Mimulus_guttatus_v140   (Spotted monkey flower)   19
Solanum_lycopersicum_v.2.3   (Tomato)   27
Solanum_tuberosum_   (Potato)   34
Actinidia_chinensis_Hongyang_ 30
Aquilegia_coerulea_v195 18
Triticum_urartu_22 9
Triticum_aestivum_22   (Bread wheat)   41
Aegilops_tauschii_22 12
Brachypodium_distachyon_   (Stiff brome)   21
Oryza_barthii_22   (African wild rice)   11
Oryza_meridionalis_22 8
Oryza_glumaepatula_22 14
Oryza_glaberrima   (African rice)   14
Oryza_punctata_22 15
Oryza_nivara_22 13
Oryza_brachyantha_22   (Malo sina)   10
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   19
Oryza_sativa_v193   (Rice)   19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   15
Panicum_virgatum_v202   (Switchgrass)   43
Setaria_italica_v164   (Foxtail millet)   18
Zea_mays_subsp._mays_   (Maize)   36
Zea_mays_v181   (Maize)   34
Sorghum_bicolor_   (Sorghum)   17
Musa_balbisiana   (Balbis banana)   22
Musa_acuminata_22   (Wild Malaysian banana)   17
Amborella_trichopoda_22 12
Physcomitrella_patens 20
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 8
Volvox_carteri_v199 9
Chlamydomonas_reinhardtii_4.0 10
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 0
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 9
Thecamonas_trahens_ATCC_50062_ 7
Bigelowiella_natans_CCMP2755_22 9
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 16
Leishmania_mexicana_2.4 5
Leishmania_major_strain_Friedlin_ 5
Leishmania_infantum_JPCM5_2.4 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 5
Trypanosoma_vivax_ 2
Trypanosoma_cruzi_strain_CL_Brener 3
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 7
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 3
Pythium_iwayamai_DAOM_BR242034_22 6
Pythium_arrhenomanes_ATCC_12531_22 8
Pythium_ultimum_v1.7-2 8
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 7
Pythium_vexans_DAOM_BR484_22 9
Phytophthora_ramorum_1.1   (Sudden oak death agent)   13
Phytophthora_sojae_1.1 14
Phytophthora_infestans_T30-4_ 13
Phytophthora_capsici_ 11
Hyaloperonospora_arabidopsidis_22 8
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 3
Paramecium_tetraurelia_ 12
Tetrahymena_thermophila_SB210_1_ 7
Ichthyophthirius_multifiliis_strain_G5_ 5
Cryptosporidium_hominis 0
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 3
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 1
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 12
Naegleria_gruberi_ 27
Trichomonas_vaginalis_ 33
Guillardia_theta_CCMP2712_v1.0_ 18
Emiliania_huxleyi_CCMP1516_ 12

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   15
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   24
Hordeum_vulgare_22   (Domesticated barley)   34
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   16
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   4
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   3
Sus_scrofa_69_10.2   (Pig)   8
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   6
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   6
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   6
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   6
Loxodonta_africana_69_3   (African savanna elephant)   5
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   9
Petromyzon_marinus_69_7.0   (Sea lamprey)   5
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_69_1   (Coelacanth)   5
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4
Takifugu_rubripes_69_4   (Torafugu)   6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   26

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   39
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   8
Lotus_japonicus__(Early_assembly) 15
Malus_x_domestica_(Duplicate)   (Apple)   43
Ricinus_communis__(Early_assembly)   (Castor bean)   17
Nicotiana_benthamiana_0.4.4_(Early_draft) 49
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   27
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   27
Phoenix_dactylifera__(Early_draft)   (Date palm)   9
Protein_Data_Bank_(all_PDB_sequenc) 3
Protozoadb_2010_08_(Protozoadb) 175
STRING_v9.0.5_(STRING) 583
Uniprot_2018_03_genome 21066
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4
NCBI_2017_08_genome 8401
TargetDB__(Targets) 22

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.