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Domain combinations for 49562,_gap_,57889,_gap_,49562,_gap_,49562,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
57889 - Cysteine-rich domain
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Danio_rerio_76_9   (Zebrafish)   1
Caenorhabditis_elegans_76_235   (Roundworm)   4

Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4

Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Mus_musculus_69_38   (House mouse)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 3132
NCBI_2017_08_genome 183

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