SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Home > SCOP hierarchy > Domain combination - 49879,52113,_gap_

Domain combinations for 49879,52113,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49879 - SMAD/FHA domain
52113 - BRCT domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 1

Pan_troglodytes_76_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_76_3.1 (Western gorilla) 2

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 1

Macaca_mulatta_76_1 (Rhesus monkey) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_76_3 (Small-eared galago) 2

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 2

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 2

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 1

Vicugna_pacos_76_1 (Alpaca) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 2

Felis_catus_76_6.2 (Domestic cat) 1

Equus_caballus_76_2 (Horse) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 1

Sorex_araneus_76_1 (European shrew) 1

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 2

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 2

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_76_1.0 (Tammar wallaby) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 2

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 2

Saccoglossus_kowalevskii_v3.0 1

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 2

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_laevis_ (African clawed frog) 8

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 1

Gadus_morhua_76_1 (Atlantic cod) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 1

Takifugu_rubripes_76_4 (Torafugu) 4

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 2

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 1

Poecilia_formosa_76 (Amazon molly) 1

Oreochromis_niloticus_76_1.0 (Nile tilapia) 2

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 2

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 0

Octopus_bimaculoides_280 1

Crassostrea_gigas_22 (Pacific oyster) 0

Lottia_gigantea_ (Owl limpet) 1

Capitella_sp._I_ 1

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Lucilia_cuprina (Australian sheep blowfly) 2

Drosophila_grimshawi_1.3 1

Drosophila_pseudoobscura_2.13 1

Drosophila_persimilis_1.3 1

Drosophila_yakuba_1.3 1

Drosophila_simulans_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_melanogaster_76_5 (Fruit fly) 3

Drosophila_erecta_1.3 1

Drosophila_ananassae_1.3 1

Drosophila_virilis_1.2 1

Drosophila_mojavensis_1.3 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Anopheles_gambiae_49_3j (African malaria mosquito) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Daphnia_pulex_ (Common water flea) 1

Strigamia_maritima_22 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Mnemiopsis_leidyi (Sea walnut) 1

Nematostella_vectensis_1.0 (Starlet sea anemone) 1

Amphimedon_queenslandica 1

Trichoplax_adhaerens_ 1

Proterospongia_sp._ATCC_50818_ 1

Sphaeroforma_arctica_JP610_ 1

Capsaspora_owczarzaki_ATCC_30864_ 1

Rhizomucor_miehei_CAU432_ 1

Podospora_anserina_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Neurospora_discreta_FGSC_8579_ 1

Verticillium_albo-atrum_VaMs.102_ 1

Fusarium_graminearum_ 1

Nectria_haematococca_mpVI_ 1

Fusarium_oxysporum_f._sp._lycopersici_4286_ 1

Trichoderma_citrinoviride_v1.0 1

Trichoderma_reesei_1.2 1

Trichoderma_virens_Gv29-8_ 1

Trichoderma_harzianum_CBS_226.95_v1.0 1

Zasmidium_cellare_ATCC_36951_v1.0 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Yarrowia_lipolytica_CLIB122 1

Ashbya_gossypii_ATCC_10895_ 1

Kluyveromyces_lactis 1

Spizellomyces_punctatus_DAOM_BR117_ 0

Selaginella_moellendorffii_ 2

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 4

Citrus_clementina_v165 2

Citrus_sinensis_v154 (Sweet orange) 1

Thellungiella_halophila_v173 1

Capsella_rubella_v183 1

Arabidopsis_lyrata_ (Lyrate rockcress) 1

Phaseolus_vulgaris_v186 (French bean) 1

Glycine_max_v109 (Soybean) 2

Prunus_persica_v139 (Peach) 1

Manihot_esculenta_v147 (Cassava) 1

Populus_trichocarpa_v156 (Black cottonwood) 1

Vitis_vinifera_ (Wine grape) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 3

Aquilegia_coerulea_v195 1

Triticum_urartu_22 1

Triticum_aestivum_22 (Bread wheat) 3

Brachypodium_distachyon_ (Stiff brome) 1

Oryza_barthii_22 (African wild rice) 1

Oryza_meridionalis_22 1

Oryza_glumaepatula_22 1

Oryza_punctata_22 1

Oryza_nivara_22 1

Oryza_brachyantha_22 (Malo sina) 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 2

Oryza_sativa_v193 (Rice) 2

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 1

Panicum_virgatum_v202 (Switchgrass) 1

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_v181 (Maize) 1

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 1

Musa_acuminata_22 (Wild Malaysian banana) 1

Amborella_trichopoda_22 1

Thecamonas_trahens_ATCC_50062_ 0

Ectocarpus_siliculosus 1

Pythium_arrhenomanes_ATCC_12531_22 0

Pythium_ultimum_v1.7-2 1

Pythium_aphanidermatum_DAOM_BR444_22 1

Pythium_irregulare_DAOM_BR486_22 1

Pythium_vexans_DAOM_BR484_22 0

Phytophthora_ramorum_1.1 (Sudden oak death agent) 1

Phytophthora_sojae_1.1 1

Phytophthora_infestans_T30-4_ 0

Phytophthora_capsici_ 1

Hyaloperonospora_arabidopsidis_22 1

Cryptosporidium_hominis 1

Cryptosporidium_parvum_Iowa_II 1

Emiliania_huxleyi_CCMP1516_ 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 3

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 1

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 1

Coccidioides_posadasii_str._Silveira_ 1

Coccidioides_immitis_RMSCC_3703_ 1

Batrachochytrium_dendrobatidis_JAM81_ 1

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 1

Hordeum_vulgare_22 (Domesticated barley) 1

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 1

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 2

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 1

Vicugna_pacos_69_1 (Alpaca) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Pteropus_vampyrus_69_1 (Large flying fox) 1

Sorex_araneus_69_1 (European shrew) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_69_1.0 (Tammar wallaby) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 1

Takifugu_rubripes_69_4 (Torafugu) 1

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 1

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 1

Oreochromis_niloticus_69_1.0 (Nile tilapia) 1

Danio_rerio_69_9 (Zebrafish) 1

Drosophila_melanogaster_69_5 (Fruit fly) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 1

Homo_sapiens__(NCBI_version) (Human) 1

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Ricinus_communis__(Early_assembly) (Castor bean) 1

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

Protozoadb_2010_08_(Protozoadb) 3

STRING_v9.0.5_(STRING) 56

Uniprot_2018_03_genome 3462

NCBI_2017_08_genome 593

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

SEARCH

BROWSE

TOOLS

ABOUT

HELP

Domain combinations for 49879,52113,_gap_ superfamilies in groups of genomes